More than 300 homologs were found in PanDaTox collection
for query gene Smed_4136 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009620  Smed_4136  extracellular solute-binding protein  100 
 
 
424 aa  860    Sinorhizobium medicae WSM419  Bacteria  normal  0.518326  normal 
 
 
-
 
NC_011661  Dtur_0508  extracellular solute-binding protein family 1  55.07 
 
 
421 aa  476  1e-133  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.0000506303  n/a   
 
 
-
 
NC_012917  PC1_0736  extracellular solute-binding protein family 1  51.95 
 
 
421 aa  456  1e-127  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0972  extracellular solute-binding protein family 1  52.2 
 
 
421 aa  458  1e-127  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0828  extracellular solute-binding protein  53.27 
 
 
424 aa  452  1.0000000000000001e-126  Petrotoga mobilis SJ95  Bacteria  normal  0.142269  n/a   
 
 
-
 
NC_013411  GYMC61_0531  extracellular solute-binding protein family 1  44.14 
 
 
429 aa  354  2e-96  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_3590  extracellular solute-binding protein  36.45 
 
 
438 aa  287  2e-76  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.0000000122441  n/a   
 
 
-
 
NC_013530  Xcel_0917  extracellular solute-binding protein family 1  37.12 
 
 
455 aa  259  6e-68  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.728334  n/a   
 
 
-
 
NC_013947  Snas_2733  extracellular solute-binding protein family 1  31.25 
 
 
434 aa  172  9e-42  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0602915  normal  0.13145 
 
 
-
 
NC_012852  Rleg_6112  extracellular solute-binding protein family 1  33.6 
 
 
424 aa  164  3e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.521338  normal 
 
 
-
 
NC_013946  Mrub_2808  extracellular solute-binding protein family 1  31.19 
 
 
430 aa  164  4.0000000000000004e-39  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.512241 
 
 
-
 
NC_011371  Rleg2_6524  extracellular solute-binding protein family 1  32.72 
 
 
424 aa  160  4e-38  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.514278  normal  0.451088 
 
 
-
 
NC_013131  Caci_2031  extracellular solute-binding protein family 1  29.85 
 
 
442 aa  155  9e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.298737 
 
 
-
 
NC_009972  Haur_3641  extracellular solute-binding protein  31.58 
 
 
444 aa  154  2.9999999999999998e-36  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012028  Hlac_2862  extracellular solute-binding protein family 1  27.2 
 
 
467 aa  131  2.0000000000000002e-29  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_013205  Aaci_1215  extracellular solute-binding protein family 1  27.61 
 
 
446 aa  127  3e-28  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.0000064062  n/a   
 
 
-
 
NC_013595  Sros_6584  ABC transporter sugar binding protein  27.16 
 
 
437 aa  119  9.999999999999999e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008010  Dgeo_2859  extracellular solute-binding protein  28.3 
 
 
417 aa  114  4.0000000000000004e-24  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.511665  n/a   
 
 
-
 
NC_013521  Sked_06560  ABC-type sugar transport system, periplasmic component  29.05 
 
 
453 aa  107  5e-22  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0284  extracellular solute-binding protein family 1  27.54 
 
 
410 aa  104  4e-21  Meiothermus ruber DSM 1279  Bacteria  normal  0.0514987  normal 
 
 
-
 
NC_007908  Rfer_1099  extracellular solute-binding protein  27.63 
 
 
420 aa  100  5e-20  Rhodoferax ferrireducens T118  Bacteria  unclonable  0.000000491601  n/a   
 
 
-
 
NC_013093  Amir_2574  extracellular solute-binding protein family 1  27.35 
 
 
449 aa  98.2  3e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  0.316894  n/a   
 
 
-
 
NC_013131  Caci_5330  extracellular solute-binding protein family 1  29.78 
 
 
438 aa  97.8  3e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.489769  normal  0.341368 
 
 
-
 
NC_013131  Caci_4419  extracellular solute-binding protein family 1  27.55 
 
 
456 aa  97.4  4e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013201  Hmuk_3222  extracellular solute-binding protein family 1  25.99 
 
 
457 aa  94.4  3e-18  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.950328  normal  0.818094 
 
 
-
 
NC_010816  BLD_0923  MalE-type ABC sugar transport system periplasmic component  26.3 
 
 
450 aa  90.9  4e-17  Bifidobacterium longum DJO10A  Bacteria  normal  0.293658  n/a   
 
 
-
 
NC_010816  BLD_0922  MalE-type ABC sugar transport system periplasmic component  27.36 
 
 
447 aa  90.5  5e-17  Bifidobacterium longum DJO10A  Bacteria  normal  0.755265  n/a   
 
 
-
 
NC_011899  Hore_04270  extracellular solute-binding protein family 1  25.84 
 
 
418 aa  90.1  7e-17  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0130  extracellular solute-binding protein  29.59 
 
 
462 aa  88.6  2e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0781  extracellular solute-binding protein  25.69 
 
 
395 aa  87.8  3e-16  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.000000000729506  n/a   
 
 
-
 
NC_012852  Rleg_6156  extracellular solute-binding protein family 1  26.88 
 
 
410 aa  87.4  5e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.889741  hitchhiker  0.000305646 
 
 
-
 
NC_012669  Bcav_1454  extracellular solute-binding protein family 1  25.28 
 
 
445 aa  87  6e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.71759  normal 
 
 
-
 
NC_011368  Rleg2_5331  extracellular solute-binding protein family 1  29.5 
 
 
424 aa  85.9  0.000000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1008  MalE-type ABC sugar transport system periplasmic component  27.3 
 
 
449 aa  86.3  0.000000000000001  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03920  carbohydrate-binding protein  29.82 
 
 
437 aa  85.5  0.000000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2896  extracellular solute-binding protein  26.81 
 
 
452 aa  84  0.000000000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.034507  normal 
 
 
-
 
NC_011371  Rleg2_6572  extracellular solute-binding protein family 1  26.3 
 
 
410 aa  84.3  0.000000000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00103217  normal  0.480926 
 
 
-
 
NC_012848  Rleg_5048  extracellular solute-binding protein family 1  28.1 
 
 
424 aa  83.6  0.000000000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.133709  normal 
 
 
-
 
NC_009767  Rcas_1879  extracellular solute-binding protein  26.57 
 
 
452 aa  83.6  0.000000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.29051 
 
 
-
 
NC_013721  HMPREF0424_1064  extracellular solute-binding protein  22.28 
 
 
480 aa  82.4  0.00000000000002  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.075314 
 
 
-
 
NC_013174  Jden_0101  extracellular solute-binding protein family 1  27.06 
 
 
438 aa  82.4  0.00000000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  0.494877  normal  0.060225 
 
 
-
 
NC_009939  Dgeo_3106  ABC transporter, substrate binding periplasmic component  25.29 
 
 
408 aa  81.6  0.00000000000002  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_2845  extracellular solute-binding protein  24.78 
 
 
424 aa  80.5  0.00000000000005  Serratia proteamaculans 568  Bacteria  normal  0.35811  normal  0.0339661 
 
 
-
 
NC_011981  Avi_7341  sugar ABC transporter sugar-binding protein  28.53 
 
 
426 aa  80.5  0.00000000000006  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_0921  MalE-type ABC sugar transport system periplasmic component  25.7 
 
 
458 aa  80.1  0.00000000000007  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1891  extracellular solute-binding protein family 1  24.94 
 
 
447 aa  80.1  0.00000000000007  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.276259 
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  24.86 
 
 
410 aa  79.3  0.0000000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  24.86 
 
 
410 aa  79.3  0.0000000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  26.65 
 
 
415 aa  79.3  0.0000000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_013525  Tter_0829  extracellular solute-binding protein family 1  25.69 
 
 
504 aa  78.2  0.0000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014165  Tbis_0842  extracellular solute-binding protein family 1  26.67 
 
 
432 aa  76.6  0.0000000000008  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.516605 
 
 
-
 
NC_009620  Smed_4916  extracellular solute-binding protein  25.29 
 
 
410 aa  76.6  0.0000000000008  Sinorhizobium medicae WSM419  Bacteria  normal  0.06645  normal  0.512511 
 
 
-
 
NC_010483  TRQ2_1614  extracellular solute-binding protein  25.93 
 
 
391 aa  76.3  0.0000000000009  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.000159886  n/a   
 
 
-
 
NC_011988  Avi_5398  ABC transporter substrate binding protein (sugar)  25.37 
 
 
403 aa  75.9  0.000000000001  Agrobacterium vitis S4  Bacteria  normal  0.14652  n/a   
 
 
-
 
NC_013946  Mrub_0045  extracellular solute-binding protein family 1  26.62 
 
 
414 aa  75.1  0.000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  0.713374  normal 
 
 
-
 
NC_013172  Bfae_04070  ABC-type sugar transport system, periplasmic component  31.44 
 
 
444 aa  75.1  0.000000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_4038  extracellular solute-binding protein family 1  23.98 
 
 
405 aa  73.6  0.000000000006  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1438  extracellular solute-binding protein  23.3 
 
 
400 aa  73.2  0.000000000008  Petrotoga mobilis SJ95  Bacteria  unclonable  0.000000172655  n/a   
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  24.84 
 
 
407 aa  73.2  0.000000000008  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  28.57 
 
 
420 aa  72.8  0.00000000001  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_008148  Rxyl_0069  twin-arginine translocation pathway signal  25.9 
 
 
432 aa  72.8  0.00000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_11620  ABC-type sugar transport system, periplasmic component  25.37 
 
 
426 aa  72.8  0.00000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_7208  extracellular solute-binding protein family 1  26.16 
 
 
410 aa  72  0.00000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_1552  extracellular solute-binding protein  25.31 
 
 
391 aa  72.4  0.00000000002  Thermotoga petrophila RKU-1  Bacteria  decreased coverage  0.000000398035  n/a   
 
 
-
 
NC_009953  Sare_1506  extracellular solute-binding protein  29.05 
 
 
428 aa  71.2  0.00000000003  Salinispora arenicola CNS-205  Bacteria  normal  0.629333  decreased coverage  0.000020483 
 
 
-
 
NC_013526  Tter_2025  extracellular solute-binding protein family 1  23.81 
 
 
434 aa  70.9  0.00000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000000165485  n/a   
 
 
-
 
NC_009664  Krad_3964  extracellular solute-binding protein family 1  28.62 
 
 
435 aa  70.9  0.00000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.340566  normal  0.592754 
 
 
-
 
NC_010001  Cphy_3409  extracellular solute-binding protein  24.38 
 
 
451 aa  71.2  0.00000000004  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000000553575  n/a   
 
 
-
 
NC_009380  Strop_1557  extracellular solute-binding protein  29.52 
 
 
428 aa  70.5  0.00000000005  Salinispora tropica CNB-440  Bacteria  normal  normal  0.920193 
 
 
-
 
NC_009486  Tpet_0966  extracellular solute-binding protein  24.38 
 
 
392 aa  70.1  0.00000000007  Thermotoga petrophila RKU-1  Bacteria  unclonable  0.0000000011003  n/a   
 
 
-
 
NC_010483  TRQ2_0984  extracellular solute-binding protein  24.38 
 
 
392 aa  70.1  0.00000000007  Thermotoga sp. RQ2  Bacteria  decreased coverage  0.000118485  n/a   
 
 
-
 
NC_013174  Jden_0381  extracellular solute-binding protein family 1  25.69 
 
 
445 aa  69.7  0.00000000009  Jonesia denitrificans DSM 20603  Bacteria  normal  0.491759  normal 
 
 
-
 
NC_009012  Cthe_1020  extracellular solute-binding protein  26.73 
 
 
459 aa  69.3  0.0000000001  Clostridium thermocellum ATCC 27405  Bacteria  unclonable  0.0000000124434  n/a   
 
 
-
 
NC_012669  Bcav_3775  extracellular solute-binding protein family 1  25.43 
 
 
459 aa  68.2  0.0000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.137854  normal 
 
 
-
 
NC_007952  Bxe_B0420  ABC sugar transporter, periplasmic ligand binding protein  25.29 
 
 
410 aa  68.6  0.0000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0385  extracellular solute-binding protein family 1  26.01 
 
 
410 aa  68.6  0.0000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0390662 
 
 
-
 
NC_009664  Krad_3566  extracellular solute-binding protein family 1  26.64 
 
 
434 aa  68.6  0.0000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0143758 
 
 
-
 
NC_011886  Achl_1750  extracellular solute-binding protein family 1  34.69 
 
 
448 aa  68.9  0.0000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000348272 
 
 
-
 
NC_013172  Bfae_19280  ABC-type sugar transport system, periplasmic component  25.17 
 
 
416 aa  67.8  0.0000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  0.147667  n/a   
 
 
-
 
NC_013131  Caci_4984  extracellular solute-binding protein family 1  24.06 
 
 
432 aa  68.2  0.0000000003  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.000108283  decreased coverage  0.000897425 
 
 
-
 
NC_013526  Tter_2644  extracellular solute-binding protein family 1  25.48 
 
 
431 aa  67.4  0.0000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_7173  sugar transport system (sugar-binding protein)  25.68 
 
 
433 aa  67.4  0.0000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.119283 
 
 
-
 
NC_013235  Namu_1773  extracellular solute-binding protein family 1  28.03 
 
 
465 aa  67  0.0000000005  Nakamurella multipartita DSM 44233  Bacteria  normal  0.504545  normal  0.290135 
 
 
-
 
NC_012669  Bcav_0556  extracellular solute-binding protein family 1  23.93 
 
 
430 aa  67  0.0000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.71623 
 
 
-
 
NC_011661  Dtur_0854  extracellular solute-binding protein family 1  23.87 
 
 
398 aa  66.6  0.0000000007  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.124504  n/a   
 
 
-
 
NC_010623  Bphy_4057  extracellular solute-binding protein  26.12 
 
 
410 aa  65.9  0.000000001  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2818  extracellular solute-binding protein  24.68 
 
 
488 aa  65.1  0.000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.179577  normal 
 
 
-
 
NC_013172  Bfae_04000  ABC-type sugar transport system, periplasmic component  26.52 
 
 
445 aa  65.5  0.000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2546  extracellular solute-binding protein  23.85 
 
 
488 aa  64.7  0.000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.39868  normal  0.139719 
 
 
-
 
NC_014165  Tbis_1886  extracellular solute-binding protein family 1  25.72 
 
 
435 aa  64.7  0.000000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.23125 
 
 
-
 
NC_009616  Tmel_0596  extracellular solute-binding protein  24.23 
 
 
390 aa  64.3  0.000000004  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.00439649  n/a   
 
 
-
 
NC_010001  Cphy_0291  extracellular solute-binding protein  26.09 
 
 
449 aa  64.3  0.000000004  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2348  extracellular solute-binding protein  24.66 
 
 
363 aa  63.9  0.000000005  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.585172 
 
 
-
 
NC_011368  Rleg2_5349  extracellular solute-binding protein family 1  25.19 
 
 
406 aa  63.9  0.000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.535832 
 
 
-
 
NC_011886  Achl_3566  extracellular solute-binding protein family 1  26.33 
 
 
426 aa  63.5  0.000000006  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013521  Sked_11600  ABC-type sugar transport system, periplasmic component  22.93 
 
 
444 aa  63.9  0.000000006  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.558288  normal  0.039331 
 
 
-
 
NC_009953  Sare_0393  extracellular solute-binding protein  27.54 
 
 
434 aa  63.9  0.000000006  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0128577 
 
 
-
 
NC_013131  Caci_7906  extracellular solute-binding protein family 1  31.05 
 
 
420 aa  63.5  0.000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.819994  normal 
 
 
-
 
NC_007963  Csal_0633  extracellular solute-binding protein  24.87 
 
 
436 aa  63.2  0.000000008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.131479  n/a   
 
 
-
 
NC_014210  Ndas_3999  extracellular solute-binding protein family 1  22.36 
 
 
452 aa  63.2  0.000000008  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.220113  normal  0.250177 
 
 
-
 
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