More than 300 homologs were found in PanDaTox collection
for query gene Smed_3954 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  100 
 
 		 229 aa  471  1e-132  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  46.73 
 
 		 239 aa  202  4e-51  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008686  Pden_2354  two component LuxR family transcriptional regulator  41.04 
 
 		 236 aa  188  5.999999999999999e-47  Paracoccus denitrificans PD1222  Bacteria  normal  0.399998  normal  1 
 
 
-
 
NC_007493  RSP_2882  two component LuxR family transcriptional regulator  44.19 
 
 		 226 aa  184  7e-46  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.533901  n/a   
 
 
-
 
NC_009428  Rsph17025_1932  two component LuxR family transcriptional regulator  42.86 
 
 		 236 aa  184  8e-46  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009049  Rsph17029_1528  two component LuxR family transcriptional regulator  44.19 
 
 		 226 aa  184  9e-46  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.0620794 
 
 
-
 
NC_007493  RSP_2591  two component LuxR family transcriptional regulator  42.45 
 
 		 235 aa  181  6e-45  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.211381  n/a   
 
 
-
 
NC_009049  Rsph17029_1249  two component LuxR family transcriptional regulator  42.45 
 
 		 235 aa  181  9.000000000000001e-45  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_2674  two component transcriptional regulator  41.59 
 
 		 228 aa  172  3.9999999999999995e-42  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00219271  normal  1 
 
 
-
 
NC_009428  Rsph17025_1138  two component LuxR family transcriptional regulator  44.34 
 
 		 226 aa  168  6e-41  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.914207  normal  1 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  37.74 
 
 		 209 aa  160  2e-38  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  40.67 
 
 		 216 aa  155  7e-37  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  37.91 
 
 		 211 aa  154  1e-36  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  39.42 
 
 		 216 aa  153  2e-36  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  37.02 
 
 		 211 aa  153  2e-36  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  39.42 
 
 		 216 aa  153  2e-36  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  39.13 
 
 		 215 aa  153  2e-36  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  39.42 
 
 		 216 aa  153  2.9999999999999998e-36  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  39.3 
 
 		 221 aa  152  4e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  39.42 
 
 		 216 aa  152  4e-36  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  39.61 
 
 		 215 aa  151  8.999999999999999e-36  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  36.79 
 
 		 209 aa  150  1e-35  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  38.81 
 
 		 221 aa  151  1e-35  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  37.68 
 
 		 215 aa  147  1.0000000000000001e-34  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  40.1 
 
 		 217 aa  147  1.0000000000000001e-34  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  40.1 
 
 		 217 aa  147  1.0000000000000001e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  37.68 
 
 		 215 aa  146  2.0000000000000003e-34  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  37.56 
 
 		 238 aa  144  9e-34  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  37.5 
 
 		 219 aa  142  3e-33  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  36.36 
 
 		 251 aa  142  6e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  34.76 
 
 		 241 aa  142  6e-33  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  37.38 
 
 		 252 aa  142  6e-33  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  37.62 
 
 		 220 aa  141  8e-33  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  35.89 
 
 		 212 aa  140  9.999999999999999e-33  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  37.19 
 
 		 251 aa  140  9.999999999999999e-33  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  35.19 
 
 		 221 aa  141  9.999999999999999e-33  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  36.23 
 
 		 223 aa  140  1.9999999999999998e-32  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  38.24 
 
 		 218 aa  139  3e-32  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  35.71 
 
 		 220 aa  139  3.9999999999999997e-32  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  35.24 
 
 		 220 aa  138  6e-32  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  35.86 
 
 		 219 aa  138  6e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  37.38 
 
 		 210 aa  138  7e-32  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  37.75 
 
 		 210 aa  138  7e-32  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  35.75 
 
 		 224 aa  138  7.999999999999999e-32  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0588074 
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  35.27 
 
 		 225 aa  137  8.999999999999999e-32  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  35.96 
 
 		 220 aa  137  1e-31  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  34.43 
 
 		 219 aa  137  1e-31  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  35.75 
 
 		 224 aa  136  2e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal  1 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  34.33 
 
 		 224 aa  136  2e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  35.96 
 
 		 220 aa  137  2e-31  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  35.44 
 
 		 224 aa  137  2e-31  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  35.12 
 
 		 209 aa  135  4e-31  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  34.29 
 
 		 220 aa  135  4e-31  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  36.19 
 
 		 221 aa  135  4e-31  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  34.29 
 
 		 220 aa  135  4e-31  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  33.81 
 
 		 220 aa  135  4e-31  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  33.81 
 
 		 220 aa  135  5e-31  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  35.38 
 
 		 219 aa  134  9.999999999999999e-31  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  33.33 
 
 		 220 aa  134  9.999999999999999e-31  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  34.29 
 
 		 220 aa  133  1.9999999999999998e-30  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  35.71 
 
 		 216 aa  132  3e-30  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  33.65 
 
 		 219 aa  132  3e-30  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  35.07 
 
 		 219 aa  133  3e-30  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  31.31 
 
 		 218 aa  132  3.9999999999999996e-30  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  32.37 
 
 		 213 aa  132  3.9999999999999996e-30  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  32.69 
 
 		 222 aa  130  2.0000000000000002e-29  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  32.84 
 
 		 215 aa  128  7.000000000000001e-29  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_011757  Mchl_4590  two component transcriptional regulator, LuxR family  33.84 
 
 		 244 aa  128  8.000000000000001e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.590508  normal  0.147521 
 
 
-
 
NC_010172  Mext_4220  response regulator receiver  33.84 
 
 		 244 aa  128  8.000000000000001e-29  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.89842 
 
 
-
 
NC_007964  Nham_0273  two component LuxR family transcriptional regulator  35.98 
 
 		 231 aa  128  8.000000000000001e-29  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  36.62 
 
 		 217 aa  126  3e-28  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal  1 
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  37.07 
 
 		 216 aa  126  3e-28  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  33.64 
 
 		 222 aa  125  4.0000000000000003e-28  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  30.81 
 
 		 223 aa  125  5e-28  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  35.75 
 
 		 214 aa  124  2e-27  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_2614  two component LuxR family transcriptional regulator  37.74 
 
 		 222 aa  124  2e-27  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  35.75 
 
 		 214 aa  124  2e-27  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010002  Daci_2921  two component LuxR family transcriptional regulator  34.27 
 
 		 229 aa  121  8e-27  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.190475 
 
 
-
 
NC_011989  Avi_0584  two component response regulator  31.86 
 
 		 215 aa  121  9.999999999999999e-27  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_009831  Ssed_3140  two component LuxR family transcriptional regulator  37.98 
 
 		 220 aa  120  9.999999999999999e-27  Shewanella sediminis HAW-EB3  Bacteria  normal  0.803361  normal  0.270175 
 
 
-
 
NC_011071  Smal_2061  two component transcriptional regulator, LuxR family  34.74 
 
 		 224 aa  120  1.9999999999999998e-26  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.737796  normal  1 
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  33.66 
 
 		 210 aa  120  1.9999999999999998e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  34.31 
 
 		 221 aa  119  3.9999999999999996e-26  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  30.99 
 
 		 218 aa  119  3.9999999999999996e-26  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  30.88 
 
 		 211 aa  119  4.9999999999999996e-26  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  34.31 
 
 		 221 aa  119  4.9999999999999996e-26  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.892266 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  30.77 
 
 		 223 aa  118  6e-26  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_011138  MADE_00712  putative regulator in two-component regulatory system ; LuxR family protein  29.86 
 
 		 214 aa  118  7e-26  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.169527  n/a   
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  30.33 
 
 		 223 aa  118  7.999999999999999e-26  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  30.77 
 
 		 223 aa  118  9e-26  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  34.31 
 
 		 221 aa  118  9e-26  Pseudomonas putida F1  Bacteria  normal  0.548338  normal  1 
 
 
-
 
NC_003910  CPS_3420  LuxR family DNA-binding response regulator  33.18 
 
 		 216 aa  117  9.999999999999999e-26  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  29.86 
 
 		 215 aa  117  9.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_1943  two component LuxR family transcriptional regulator  34.8 
 
 		 221 aa  117  9.999999999999999e-26  Pseudomonas mendocina ymp  Bacteria  normal  0.550145  normal  1 
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  29.81 
 
 		 227 aa  117  1.9999999999999998e-25  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_007347  Reut_A2742  LuxR response regulator receiver  33.17 
 
 		 219 aa  116  3e-25  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  35.78 
 
 		 221 aa  116  3e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  34.31 
 
 		 221 aa  116  3.9999999999999997e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_0522  two component LuxR family transcriptional regulator  32.06 
 
 		 219 aa  115  5e-25  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  33.33 
 
 		 248 aa  115  5e-25  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
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