More than 300 homologs were found in PanDaTox collection
for query gene Smed_1742 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  100 
 
 
242 aa  493  9.999999999999999e-139  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  60.09 
 
 
241 aa  295  4e-79  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  58.85 
 
 
240 aa  277  1e-73  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  60.73 
 
 
240 aa  271  8.000000000000001e-72  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_007406  Nwi_2061  Crp family transcriptional regulator  40.42 
 
 
241 aa  184  1.0000000000000001e-45  Nitrobacter winogradskyi Nb-255  Bacteria  hitchhiker  0.00300081  normal 
 
 
-
 
NC_007964  Nham_1258  Crp/FNR family transcriptional regulator  40.68 
 
 
241 aa  181  9.000000000000001e-45  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  41.28 
 
 
230 aa  172  3.9999999999999995e-42  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  39.13 
 
 
248 aa  169  3e-41  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  39.39 
 
 
248 aa  169  4e-41  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  39.39 
 
 
248 aa  169  4e-41  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  39.83 
 
 
248 aa  166  2.9999999999999998e-40  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_008044  TM1040_2547  Crp/FNR family transcriptional regulator  38.2 
 
 
246 aa  160  1e-38  Ruegeria sp. TM1040  Bacteria  normal  0.389339  normal  0.365128 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  37.02 
 
 
249 aa  158  8e-38  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  39.81 
 
 
231 aa  157  1e-37  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  41.2 
 
 
242 aa  155  6e-37  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1850  CRP/FNR family transcriptional regulator  40.8 
 
 
211 aa  147  1.0000000000000001e-34  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  37.85 
 
 
262 aa  143  2e-33  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  38.86 
 
 
250 aa  142  6e-33  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  40.36 
 
 
310 aa  137  2e-31  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  38.36 
 
 
253 aa  134  9.999999999999999e-31  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  37.86 
 
 
237 aa  134  9.999999999999999e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  36.75 
 
 
246 aa  134  9.999999999999999e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  35.24 
 
 
254 aa  132  6.999999999999999e-30  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  34.08 
 
 
239 aa  131  9e-30  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  34.33 
 
 
250 aa  130  2.0000000000000002e-29  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  34.33 
 
 
250 aa  130  3e-29  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  41.08 
 
 
222 aa  129  5.0000000000000004e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  33.63 
 
 
239 aa  127  1.0000000000000001e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  33.63 
 
 
239 aa  127  1.0000000000000001e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  34.08 
 
 
239 aa  127  1.0000000000000001e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  33.78 
 
 
249 aa  124  2e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  37.16 
 
 
238 aa  124  2e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  37.16 
 
 
238 aa  124  2e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  37.89 
 
 
230 aa  122  5e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  40.66 
 
 
231 aa  122  6e-27  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  33.76 
 
 
248 aa  120  9.999999999999999e-27  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  38.42 
 
 
242 aa  119  3e-26  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  32.89 
 
 
245 aa  118  7e-26  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  39.2 
 
 
229 aa  116  3e-25  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  33.78 
 
 
251 aa  116  3e-25  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  39.2 
 
 
229 aa  116  3e-25  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1951  CRP/FNR family transcriptional regulator  32.88 
 
 
263 aa  114  1.0000000000000001e-24  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  40.11 
 
 
231 aa  114  1.0000000000000001e-24  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  39.25 
 
 
236 aa  114  1.0000000000000001e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_007493  RSP_2572  crpK, Fnr-type transcriptional regulator  30.99 
 
 
263 aa  114  2.0000000000000002e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2279  Crp/FNR family transcriptional regulator  36.61 
 
 
258 aa  114  2.0000000000000002e-24  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1230  CRP/FNR family transcriptional regulator  30.99 
 
 
263 aa  114  2.0000000000000002e-24  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  37.36 
 
 
229 aa  112  7.000000000000001e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  38.89 
 
 
204 aa  108  5e-23  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  40.74 
 
 
229 aa  108  7.000000000000001e-23  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  39.75 
 
 
230 aa  108  7.000000000000001e-23  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  30.24 
 
 
254 aa  108  8.000000000000001e-23  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  37.36 
 
 
229 aa  107  2e-22  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  38.51 
 
 
229 aa  107  2e-22  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  36.65 
 
 
226 aa  106  3e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  36.9 
 
 
211 aa  106  3e-22  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  32.98 
 
 
274 aa  106  3e-22  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1047  cyclic nucleotide-binding: regulatory protein, Crp  31.97 
 
 
247 aa  105  5e-22  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  40.33 
 
 
235 aa  105  7e-22  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  37.93 
 
 
230 aa  105  8e-22  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  37.93 
 
 
229 aa  104  1e-21  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  36.16 
 
 
215 aa  104  1e-21  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  35.58 
 
 
228 aa  104  1e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  30.77 
 
 
244 aa  104  2e-21  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  28.7 
 
 
250 aa  103  2e-21  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  36.56 
 
 
227 aa  103  3e-21  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  29.13 
 
 
249 aa  102  5e-21  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  29.44 
 
 
250 aa  102  5e-21  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  34.03 
 
 
243 aa  102  6e-21  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1530  Crp/FNR family transcriptional regulator  31.06 
 
 
239 aa  102  6e-21  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  28.28 
 
 
249 aa  102  6e-21  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_009467  Acry_3214  CRP/FNR family transcriptional regulator  38.46 
 
 
230 aa  102  6e-21  Acidiphilium cryptum JF-5  Bacteria  normal  0.939046  n/a   
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  29.03 
 
 
250 aa  101  9e-21  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  29.03 
 
 
250 aa  101  9e-21  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  29.44 
 
 
248 aa  100  1e-20  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  38.07 
 
 
227 aa  101  1e-20  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  28.63 
 
 
250 aa  100  2e-20  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  28.63 
 
 
250 aa  100  2e-20  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  28.63 
 
 
250 aa  100  2e-20  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  28.82 
 
 
248 aa  100  2e-20  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  28.63 
 
 
250 aa  100  2e-20  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  28.63 
 
 
250 aa  100  2e-20  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  36.81 
 
 
220 aa  100  2e-20  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  30.52 
 
 
256 aa  100  3e-20  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_008781  Pnap_3775  CRP/FNR family transcriptional regulator  31 
 
 
265 aa  100  3e-20  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  28.38 
 
 
250 aa  100  3e-20  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  29.03 
 
 
250 aa  100  3e-20  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  29.17 
 
 
250 aa  99.8  4e-20  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_011662  Tmz1t_1288  transcriptional regulator, Crp/Fnr family  32.24 
 
 
246 aa  99.8  4e-20  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  30.7 
 
 
248 aa  99.4  4e-20  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  30.7 
 
 
248 aa  99.4  5e-20  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  28.63 
 
 
250 aa  99.4  5e-20  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  28.28 
 
 
249 aa  99.4  5e-20  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  30.4 
 
 
254 aa  99  7e-20  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  28.3 
 
 
250 aa  99  7e-20  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  33.52 
 
 
224 aa  99  7e-20  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  40.36 
 
 
227 aa  98.6  8e-20  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  32.11 
 
 
251 aa  97.8  1e-19  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  31.16 
 
 
248 aa  97.8  1e-19  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  32.11 
 
 
251 aa  97.8  1e-19  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
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