206 homologs were found in PanDaTox collection
for query gene Smal_2402 on replicon NC_011071
Organism: Stenotrophomonas maltophilia R551-3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011071  Smal_2402  response regulator receiver and unknown domain protein  100 
 
 
126 aa  239  7.999999999999999e-63  Stenotrophomonas maltophilia R551-3  Bacteria  hitchhiker  0.00000734485  normal  0.97225 
 
 
-
 
NC_010717  PXO_00619  two-component system regulatory protein  53.77 
 
 
107 aa  104  3e-22  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.401301  n/a   
 
 
-
 
NC_010513  Xfasm12_2179  response regulator receiver protein  42.74 
 
 
132 aa  103  6e-22  Xylella fastidiosa M12  Bacteria  normal  0.896157  n/a   
 
 
-
 
NC_010577  XfasM23_2091  response regulator receiver protein  42.74 
 
 
132 aa  103  6e-22  Xylella fastidiosa M23  Bacteria  normal  0.494931  n/a   
 
 
-
 
NC_010338  Caul_0470  response regulator receiver protein  41.59 
 
 
133 aa  75.1  0.0000000000003  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0677  putative two component-response regulator receiver (CheY-like protein)  47.92 
 
 
104 aa  73.9  0.0000000000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.339833 
 
 
-
 
NC_009719  Plav_0358  signal transduction histidine kinase  40.78 
 
 
602 aa  72.8  0.000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1267  response regulator receiver/SARP domain-containing protein  35.34 
 
 
134 aa  63.2  0.000000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  decreased coverage  0.00862788 
 
 
-
 
NC_007794  Saro_1396  response regulator receiver domain-containing protein  36.84 
 
 
117 aa  62.4  0.000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.230809  n/a   
 
 
-
 
NC_009429  Rsph17025_3337  hypothetical protein  39.5 
 
 
130 aa  62.4  0.000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.244169  normal  0.34569 
 
 
-
 
NC_009620  Smed_4279  response regulator receiver protein  37.27 
 
 
120 aa  62.4  0.000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.718019  normal 
 
 
-
 
NC_010505  Mrad2831_4846  response regulator receiver protein  36.21 
 
 
126 aa  62.8  0.000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.211413  normal 
 
 
-
 
NC_010505  Mrad2831_2937  response regulator receiver protein  37.61 
 
 
129 aa  61.6  0.000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.972944  normal 
 
 
-
 
NC_012850  Rleg_2608  response regulator receiver protein  38.94 
 
 
114 aa  61.6  0.000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.186263  normal 
 
 
-
 
NC_010511  M446_0019  response regulator receiver protein  35.9 
 
 
129 aa  61.2  0.000000005  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0611118 
 
 
-
 
NC_011988  Avi_5541  response regulator  35.85 
 
 
134 aa  60.8  0.000000005  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6261  putative response regulator receiver (CheY-like protein)  40 
 
 
121 aa  60.8  0.000000006  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.235266  normal  0.732793 
 
 
-
 
NC_011989  Avi_3496  bacteriophytochrome protein  40.19 
 
 
852 aa  60.8  0.000000006  Agrobacterium vitis S4  Bacteria  normal  0.552776  n/a   
 
 
-
 
NC_010581  Bind_0708  response regulator receiver protein  36.52 
 
 
123 aa  60.8  0.000000007  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.795364  normal  0.880104 
 
 
-
 
NC_011894  Mnod_0022  response regulator receiver and SARP domain protein  35.9 
 
 
142 aa  60.5  0.000000007  Methylobacterium nodulans ORS 2060  Bacteria  hitchhiker  0.000346597  n/a   
 
 
-
 
NC_010338  Caul_0079  signal transduction histidine kinase  41.38 
 
 
639 aa  60.5  0.000000008  Caulobacter sp. K31  Bacteria  normal  normal  0.464916 
 
 
-
 
NC_009485  BBta_0251  hypothetical protein  39.45 
 
 
124 aa  60.5  0.000000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1784  response regulator receiver domain-containing protein  47.42 
 
 
124 aa  60.1  0.000000009  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.474362  n/a   
 
 
-
 
NC_011894  Mnod_6449  response regulator receiver protein  42.73 
 
 
121 aa  60.1  0.000000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2323  response regulator receiver protein  31.93 
 
 
121 aa  60.1  0.00000001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.03657 
 
 
-
 
NC_009049  Rsph17029_0431  response regulator receiver protein  46.39 
 
 
124 aa  60.1  0.00000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0769354  normal 
 
 
-
 
NC_011757  Mchl_4798  response regulator receiver protein  41.28 
 
 
120 aa  60.1  0.00000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.107601  normal 
 
 
-
 
NC_010511  M446_6401  response regulator receiver protein  39.05 
 
 
126 aa  59.7  0.00000001  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0109  response regulator receiver  41.67 
 
 
120 aa  59.7  0.00000001  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3759  response regulator receiver protein  40.5 
 
 
127 aa  59.3  0.00000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.514361  n/a   
 
 
-
 
NC_010725  Mpop_0475  response regulator receiver protein  37.07 
 
 
129 aa  59.3  0.00000002  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_6064  response regulator receiver domain-containing protein  40.82 
 
 
126 aa  58.2  0.00000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009507  Swit_5346  response regulator receiver protein  39.39 
 
 
118 aa  58.5  0.00000003  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5233  putative transcriptional regulator, Crp/Fnr family  36.44 
 
 
384 aa  58.5  0.00000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.222219 
 
 
-
 
NC_007493  RSP_1629  response regulator receiver domain-containing protein  38.14 
 
 
129 aa  58.2  0.00000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.324074  n/a   
 
 
-
 
NC_010505  Mrad2831_4234  response regulator receiver protein  42.2 
 
 
121 aa  58.2  0.00000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0312747 
 
 
-
 
NC_011757  Mchl_0440  response regulator receiver protein  37.04 
 
 
130 aa  58.2  0.00000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0544928  normal  0.588008 
 
 
-
 
NC_010172  Mext_0407  response regulator receiver  37.04 
 
 
130 aa  58.2  0.00000004  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.459485 
 
 
-
 
NC_010510  Mrad2831_6244  response regulator receiver modulated GAF sensor protein  38.33 
 
 
849 aa  58.2  0.00000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_3363  response regulator receiver protein  34.82 
 
 
133 aa  57.8  0.00000005  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.387857 
 
 
-
 
NC_010172  Mext_1965  response regulator receiver  40 
 
 
126 aa  57.4  0.00000006  Methylobacterium extorquens PA1  Bacteria  normal  0.132523  normal 
 
 
-
 
NC_011757  Mchl_2241  response regulator receiver protein  40 
 
 
126 aa  57.4  0.00000006  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.926249 
 
 
-
 
NC_007493  RSP_1262  response regulator receiver protein  35.4 
 
 
195 aa  57.4  0.00000007  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2922  response regulator receiver/SARP domain-containing protein  35.4 
 
 
195 aa  57.4  0.00000007  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011887  Mnod_7970  response regulator receiver and SARP domain protein  37.93 
 
 
160 aa  56.6  0.0000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.304155  n/a   
 
 
-
 
NC_008254  Meso_0621  response regulator receiver protein  31.4 
 
 
120 aa  55.8  0.0000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0773  response regulator receiver  45.24 
 
 
149 aa  55.8  0.0000002  Methylobacterium extorquens PA1  Bacteria  normal  0.863112  normal 
 
 
-
 
NC_009507  Swit_5270  signal transduction histidine kinase  39.39 
 
 
559 aa  56.2  0.0000002  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.909185 
 
 
-
 
NC_009049  Rsph17029_1334  response regulator receiver protein  39.18 
 
 
126 aa  55.5  0.0000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.395948 
 
 
-
 
NC_010725  Mpop_1920  response regulator receiver protein  37.17 
 
 
126 aa  55.1  0.0000003  Methylobacterium populi BJ001  Bacteria  normal  normal  0.170402 
 
 
-
 
NC_010510  Mrad2831_6265  response regulator receiver protein  44.83 
 
 
136 aa  54.7  0.0000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0717  response regulator receiver protein  42.61 
 
 
122 aa  54.3  0.0000005  Caulobacter sp. K31  Bacteria  normal  0.0892969  normal 
 
 
-
 
NC_011769  DvMF_1374  putative PAS/PAC sensor protein  44.58 
 
 
408 aa  54.7  0.0000005  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009669  Oant_4458  putative GAF sensor protein  30 
 
 
844 aa  54.3  0.0000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1215  response regulator receiver protein  34.55 
 
 
124 aa  54.3  0.0000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0588681  normal  0.159144 
 
 
-
 
NC_008254  Meso_2032  response regulator receiver protein  33.9 
 
 
125 aa  53.9  0.0000007  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4411  putative response regulator receiver (CheY-like protein)  33.33 
 
 
131 aa  53.9  0.0000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.514484 
 
 
-
 
NC_009720  Xaut_2532  response regulator receiver protein  33.91 
 
 
138 aa  53.9  0.0000007  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2520  response regulator receiver domain-containing protein  35.19 
 
 
125 aa  53.9  0.0000008  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.113297  normal  0.478353 
 
 
-
 
NC_010501  PputW619_2574  response regulator receiver modulated GAF sensor protein  39.05 
 
 
844 aa  53.9  0.0000008  Pseudomonas putida W619  Bacteria  normal  normal  0.969915 
 
 
-
 
NC_010505  Mrad2831_3234  response regulator receiver protein  33 
 
 
207 aa  53.5  0.0000009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0140449  normal 
 
 
-
 
NC_009620  Smed_4933  response regulator receiver protein  35.78 
 
 
121 aa  53.5  0.0000009  Sinorhizobium medicae WSM419  Bacteria  normal  0.124626  normal  0.430513 
 
 
-
 
NC_009621  Smed_5777  response regulator receiver protein  35.78 
 
 
136 aa  53.5  0.0000009  Sinorhizobium medicae WSM419  Bacteria  normal  0.0732019  hitchhiker  0.00995229 
 
 
-
 
NC_011757  Mchl_3092  response regulator receiver protein  39.32 
 
 
124 aa  53.1  0.000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0555687  normal  0.395265 
 
 
-
 
NC_007643  Rru_A0694  response regulator  34.86 
 
 
147 aa  53.5  0.000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0268  sigma54 specific transcriptional regulator, Fis family  31.78 
 
 
651 aa  52.8  0.000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6935  response regulator  31.19 
 
 
141 aa  52.8  0.000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.134474  normal 
 
 
-
 
NC_010725  Mpop_1296  response regulator receiver protein  36.61 
 
 
136 aa  53.5  0.000001  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2866  response regulator receiver  39.32 
 
 
124 aa  52.8  0.000002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_3299  response regulator receiver protein  33.33 
 
 
123 aa  52.4  0.000002  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00414312 
 
 
-
 
NC_009511  Swit_3435  response regulator receiver protein  37.5 
 
 
121 aa  52.8  0.000002  Sphingomonas wittichii RW1  Bacteria  normal  0.465011  normal  0.396609 
 
 
-
 
NC_011368  Rleg2_5238  response regulator receiver protein  38.94 
 
 
127 aa  52.8  0.000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.516097  normal  0.262734 
 
 
-
 
NC_007492  Pfl01_1981  response regulator receiver domain-containing protein  38.79 
 
 
177 aa  52  0.000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.366163 
 
 
-
 
NC_007794  Saro_0738  response regulator receiver domain-containing protein  46.25 
 
 
156 aa  52  0.000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2069  response regulator receiver domain-containing protein  33.65 
 
 
123 aa  52  0.000003  Jannaschia sp. CCS1  Bacteria  normal  0.240465  normal  0.487014 
 
 
-
 
NC_011368  Rleg2_5235  response regulator receiver protein  37.76 
 
 
131 aa  51.6  0.000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0801642 
 
 
-
 
NC_007964  Nham_0646  response regulator receiver domain-containing protein  35.65 
 
 
139 aa  51.6  0.000004  Nitrobacter hamburgensis X14  Bacteria  normal  0.452757  n/a   
 
 
-
 
NC_013132  Cpin_4307  sigma54 specific transcriptional regulator, Fis family  31.09 
 
 
635 aa  51.6  0.000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.056389 
 
 
-
 
NC_009428  Rsph17025_2263  response regulator receiver/SARP domain-containing protein  37.36 
 
 
104 aa  51.6  0.000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.911956  normal  0.118654 
 
 
-
 
NC_007355  Mbar_A2510  transcriptional regulator  29.41 
 
 
157 aa  51.2  0.000005  Methanosarcina barkeri str. Fusaro  Archaea  decreased coverage  0.000843612  normal  0.354799 
 
 
-
 
NC_011894  Mnod_5707  response regulator receiver protein  36.19 
 
 
127 aa  50.8  0.000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0115  two component, sigma54 specific, transcriptional regulator, Fis family  30.28 
 
 
481 aa  50.8  0.000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007959  Nham_4155  response regulator receiver domain-containing protein  32.73 
 
 
123 aa  50.8  0.000007  Nitrobacter hamburgensis X14  Bacteria  normal  0.918011  n/a   
 
 
-
 
NC_011369  Rleg2_1200  response regulator receiver protein  35.78 
 
 
126 aa  50.4  0.000007  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0095  two component transcriptional regulator  32.46 
 
 
224 aa  50.8  0.000007  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3509  signal transduction histidine kinase  45.57 
 
 
125 aa  50.4  0.000008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.316868  normal  0.542318 
 
 
-
 
NC_009485  BBta_2330  putative bacteriophytochrome  36.04 
 
 
842 aa  50.4  0.000009  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.766617  normal 
 
 
-
 
NC_013730  Slin_3671  Sigma 54 interacting domain protein  31.78 
 
 
657 aa  49.7  0.00001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5004  response regulator receiver protein  41.67 
 
 
118 aa  49.7  0.00001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.325761  n/a   
 
 
-
 
NC_010505  Mrad2831_2089  response regulator receiver protein  39.45 
 
 
152 aa  49.7  0.00001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.775144 
 
 
-
 
NC_013037  Dfer_5460  sigma54 specific transcriptional regulator, Fis family  29.91 
 
 
650 aa  50.1  0.00001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.665291  normal  0.225769 
 
 
-
 
NC_011004  Rpal_2363  response regulator receiver protein  35.24 
 
 
122 aa  49.3  0.00002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.549917  n/a   
 
 
-
 
NC_012850  Rleg_1289  response regulator receiver protein  35.14 
 
 
119 aa  49.3  0.00002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.704465  normal 
 
 
-
 
NC_008781  Pnap_2688  integral membrane sensor hybrid histidine kinase  37.82 
 
 
589 aa  48.9  0.00002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.290671 
 
 
-
 
NC_010338  Caul_1241  signal transduction histidine kinase  42.5 
 
 
631 aa  49.3  0.00002  Caulobacter sp. K31  Bacteria  normal  normal  0.0246477 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
196 aa  49.3  0.00002  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011984  Avi_9083  bacteriophytochrome protein  37.07 
 
 
856 aa  48.9  0.00003  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03021  regulatory protein  38.68 
 
 
126 aa  48.5  0.00003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3180  response regulator receiver protein  32.71 
 
 
124 aa  48.5  0.00003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0167969  n/a   
 
 
-
 
NC_012850  Rleg_3289  putative PAS/PAC sensor protein  39.02 
 
 
855 aa  48.1  0.00004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.363327  normal  0.145052 
 
 
-
 
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