More than 300 homologs were found in PanDaTox collection
for query gene Sked_16860 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_16860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  100 
 
 
258 aa  501  1e-141  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.85724  normal  0.036031 
 
 
-
 
NC_008699  Noca_3488  response regulator receiver  73.66 
 
 
229 aa  305  5.0000000000000004e-82  Nocardioides sp. JS614  Bacteria  normal  0.920048  n/a   
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  57.59 
 
 
226 aa  225  7e-58  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  56.05 
 
 
225 aa  223  3e-57  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  55.41 
 
 
218 aa  217  2e-55  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  57.08 
 
 
222 aa  213  1.9999999999999998e-54  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  54.87 
 
 
221 aa  212  4.9999999999999996e-54  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  53.54 
 
 
230 aa  211  7.999999999999999e-54  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  56.36 
 
 
241 aa  210  1e-53  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  53.81 
 
 
239 aa  211  1e-53  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  55.86 
 
 
220 aa  210  2e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  51.91 
 
 
242 aa  209  3e-53  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  57.85 
 
 
225 aa  208  7e-53  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  55.56 
 
 
226 aa  208  9e-53  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  53.51 
 
 
236 aa  207  1e-52  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_010816  BLD_0671  putative response regulator  48.15 
 
 
248 aa  206  2e-52  Bifidobacterium longum DJO10A  Bacteria  normal  0.248332  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  55.8 
 
 
227 aa  206  3e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  52.91 
 
 
221 aa  206  3e-52  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  54.42 
 
 
226 aa  205  5e-52  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  54.34 
 
 
219 aa  205  6e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  48.4 
 
 
250 aa  204  1e-51  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  55.2 
 
 
229 aa  204  1e-51  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  53.51 
 
 
223 aa  203  2e-51  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  54.05 
 
 
220 aa  202  3e-51  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  51.5 
 
 
224 aa  202  5e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  54.26 
 
 
234 aa  202  5e-51  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  51.1 
 
 
225 aa  202  6e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  55.31 
 
 
225 aa  201  8e-51  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  49.78 
 
 
233 aa  201  9.999999999999999e-51  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  52.86 
 
 
223 aa  200  9.999999999999999e-51  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  52.59 
 
 
227 aa  199  1.9999999999999998e-50  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_013235  Namu_4067  two component transcriptional regulator, LuxR family  58.26 
 
 
218 aa  199  3e-50  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.352272 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  53.85 
 
 
219 aa  199  3e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_009664  Krad_1350  two component transcriptional regulator, LuxR family  52.56 
 
 
249 aa  199  3.9999999999999996e-50  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.691965  normal 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  54.3 
 
 
225 aa  199  5e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  52.7 
 
 
218 aa  199  5e-50  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  52.79 
 
 
230 aa  199  5e-50  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  53.65 
 
 
230 aa  199  5e-50  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  52.97 
 
 
234 aa  199  5e-50  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  52 
 
 
221 aa  198  6e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  50.87 
 
 
229 aa  198  7e-50  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  53.98 
 
 
226 aa  198  7.999999999999999e-50  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  49.78 
 
 
231 aa  198  9e-50  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  53.6 
 
 
219 aa  197  1.0000000000000001e-49  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013131  Caci_6529  two component transcriptional regulator, LuxR family  54.87 
 
 
224 aa  197  1.0000000000000001e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.270807  normal  0.114568 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  52.47 
 
 
225 aa  196  2.0000000000000003e-49  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  48.13 
 
 
239 aa  196  2.0000000000000003e-49  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  54.5 
 
 
215 aa  196  3e-49  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013721  HMPREF0424_0644  response regulator receiver domain protein  41.02 
 
 
261 aa  196  3e-49  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.520039 
 
 
-
 
NC_013595  Sros_4115  response regulator receiver protein  55 
 
 
216 aa  196  4.0000000000000005e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  0.071707  normal  0.0608108 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  53.98 
 
 
230 aa  196  4.0000000000000005e-49  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  52.97 
 
 
220 aa  195  5.000000000000001e-49  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  53.18 
 
 
216 aa  195  6e-49  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  50.88 
 
 
230 aa  195  6e-49  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  50.68 
 
 
224 aa  195  7e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  55.11 
 
 
224 aa  195  7e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  50.88 
 
 
221 aa  194  9e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  52.36 
 
 
239 aa  194  1e-48  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  52.05 
 
 
219 aa  193  2e-48  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_013595  Sros_6211  response regulator receiver protein  48.66 
 
 
239 aa  193  2e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.377169 
 
 
-
 
NC_013595  Sros_0199  response regulator receiver protein  51.15 
 
 
213 aa  192  3e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1746  response regulator receiver protein  55 
 
 
217 aa  193  3e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  0.59096  normal  0.157721 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  52.05 
 
 
218 aa  192  4e-48  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_014158  Tpau_0647  two component transcriptional regulator, LuxR family  49.77 
 
 
212 aa  192  6e-48  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.518884  n/a   
 
 
-
 
NC_013169  Ksed_04500  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.22 
 
 
244 aa  191  7e-48  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  51.13 
 
 
226 aa  191  8e-48  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  50.45 
 
 
222 aa  191  9e-48  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  49.57 
 
 
234 aa  191  1e-47  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  51.12 
 
 
225 aa  190  2e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  50.67 
 
 
228 aa  190  2e-47  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  50.45 
 
 
220 aa  190  2e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  53.12 
 
 
226 aa  190  2e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013947  Snas_3639  two component transcriptional regulator, LuxR family  48.17 
 
 
215 aa  189  4e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.274763  normal 
 
 
-
 
NC_013235  Namu_0544  two component transcriptional regulator, LuxR family  49.54 
 
 
215 aa  189  5e-47  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_4872  two component transcriptional regulator, LuxR family  49.12 
 
 
232 aa  189  5e-47  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.247388  normal 
 
 
-
 
NC_013093  Amir_4511  two component transcriptional regulator, LuxR family  51.13 
 
 
226 aa  188  9e-47  Actinosynnema mirum DSM 43827  Bacteria  normal  0.11054  n/a   
 
 
-
 
NC_013595  Sros_0609  response regulator receiver protein  48.84 
 
 
218 aa  188  1e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  51.09 
 
 
234 aa  187  1e-46  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.73 
 
 
222 aa  187  2e-46  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  50 
 
 
228 aa  187  2e-46  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  49.09 
 
 
224 aa  186  3e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  48.07 
 
 
231 aa  186  3e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  50.23 
 
 
211 aa  186  3e-46  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  52.25 
 
 
221 aa  186  4e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  48.64 
 
 
220 aa  185  5e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  48.47 
 
 
224 aa  185  5e-46  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.4 
 
 
222 aa  185  7e-46  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  50.44 
 
 
228 aa  185  7e-46  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  50.22 
 
 
225 aa  184  9e-46  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  51.13 
 
 
228 aa  184  1.0000000000000001e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  50.66 
 
 
222 aa  184  1.0000000000000001e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013530  Xcel_0239  two component transcriptional regulator, LuxR family  48.43 
 
 
230 aa  184  2.0000000000000003e-45  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  50 
 
 
215 aa  184  2.0000000000000003e-45  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  50 
 
 
247 aa  183  2.0000000000000003e-45  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_014151  Cfla_0857  two component transcriptional regulator, LuxR family  48.65 
 
 
219 aa  182  3e-45  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0762303  normal 
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  48.21 
 
 
220 aa  182  4.0000000000000006e-45  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  48.92 
 
 
227 aa  182  6e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  45.7 
 
 
225 aa  182  6e-45  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000789071 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  49.32 
 
 
225 aa  181  7e-45  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  48.67 
 
 
225 aa  181  1e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal 
 
 
-
 
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