More than 300 homologs were found in PanDaTox collection
for query gene Sked_03920 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_03920  carbohydrate-binding protein  100 
 
 
437 aa  874    Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0310  extracellular solute-binding protein family 1  65.95 
 
 
440 aa  572  1.0000000000000001e-162  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0877495  normal  0.113221 
 
 
-
 
NC_013172  Bfae_04000  ABC-type sugar transport system, periplasmic component  58.5 
 
 
445 aa  475  1e-133  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5099  extracellular solute-binding protein family 1  39.96 
 
 
444 aa  311  1e-83  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.291523  normal  0.0224239 
 
 
-
 
NC_013172  Bfae_17020  ABC-type sugar transport system, periplasmic component  39.17 
 
 
431 aa  303  3.0000000000000004e-81  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00301962  n/a   
 
 
-
 
NC_013174  Jden_0381  extracellular solute-binding protein family 1  38.5 
 
 
445 aa  280  3e-74  Jonesia denitrificans DSM 20603  Bacteria  normal  0.491759  normal 
 
 
-
 
NC_013521  Sked_06560  ABC-type sugar transport system, periplasmic component  34.22 
 
 
453 aa  245  9.999999999999999e-64  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3304  extracellular solute-binding protein family 1  37.41 
 
 
441 aa  245  9.999999999999999e-64  Beutenbergia cavernae DSM 12333  Bacteria  normal  hitchhiker  0.00753481 
 
 
-
 
NC_013947  Snas_0048  extracellular solute-binding protein family 1  35.15 
 
 
434 aa  245  9.999999999999999e-64  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1927  extracellular solute-binding protein family 1  33.73 
 
 
439 aa  225  1e-57  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2574  extracellular solute-binding protein family 1  34.17 
 
 
449 aa  212  1e-53  Actinosynnema mirum DSM 43827  Bacteria  normal  0.316894  n/a   
 
 
-
 
NC_012669  Bcav_1454  extracellular solute-binding protein family 1  31.54 
 
 
445 aa  205  1e-51  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.71759  normal 
 
 
-
 
NC_012669  Bcav_4059  extracellular solute-binding protein family 1  34.52 
 
 
440 aa  199  1.0000000000000001e-49  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_4188  extracellular solute-binding protein family 1  37.23 
 
 
454 aa  193  5e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.643354  normal  0.841697 
 
 
-
 
NC_013174  Jden_0101  extracellular solute-binding protein family 1  32.54 
 
 
438 aa  180  4e-44  Jonesia denitrificans DSM 20603  Bacteria  normal  0.494877  normal  0.060225 
 
 
-
 
NC_013131  Caci_4419  extracellular solute-binding protein family 1  31.09 
 
 
456 aa  177  3e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_04070  ABC-type sugar transport system, periplasmic component  30.41 
 
 
444 aa  177  4e-43  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1762  MalE-type ABC sugar transport system periplasmic component  32.32 
 
 
438 aa  174  3.9999999999999995e-42  Bifidobacterium longum DJO10A  Bacteria  decreased coverage  0.0000740157  n/a   
 
 
-
 
NC_010816  BLD_0923  MalE-type ABC sugar transport system periplasmic component  29.96 
 
 
450 aa  173  5.999999999999999e-42  Bifidobacterium longum DJO10A  Bacteria  normal  0.293658  n/a   
 
 
-
 
NC_010816  BLD_0921  MalE-type ABC sugar transport system periplasmic component  29.61 
 
 
458 aa  167  2.9999999999999998e-40  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1008  MalE-type ABC sugar transport system periplasmic component  28.92 
 
 
449 aa  167  2.9999999999999998e-40  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1064  extracellular solute-binding protein  28.85 
 
 
480 aa  148  2.0000000000000003e-34  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.075314 
 
 
-
 
NC_010816  BLD_0922  MalE-type ABC sugar transport system periplasmic component  29.27 
 
 
447 aa  146  6e-34  Bifidobacterium longum DJO10A  Bacteria  normal  0.755265  n/a   
 
 
-
 
NC_013131  Caci_2031  extracellular solute-binding protein family 1  26.18 
 
 
442 aa  115  1.0000000000000001e-24  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.298737 
 
 
-
 
NC_013595  Sros_6584  ABC transporter sugar binding protein  27.53 
 
 
437 aa  115  2.0000000000000002e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2896  extracellular solute-binding protein  28.14 
 
 
452 aa  115  2.0000000000000002e-24  Roseiflexus sp. RS-1  Bacteria  normal  0.034507  normal 
 
 
-
 
NC_009767  Rcas_1879  extracellular solute-binding protein  29.68 
 
 
452 aa  114  4.0000000000000004e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.29051 
 
 
-
 
NC_013201  Hmuk_3222  extracellular solute-binding protein family 1  27.51 
 
 
457 aa  112  1.0000000000000001e-23  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.950328  normal  0.818094 
 
 
-
 
NC_013526  Tter_2644  extracellular solute-binding protein family 1  25.95 
 
 
431 aa  108  2e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3641  extracellular solute-binding protein  26.23 
 
 
444 aa  108  2e-22  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012852  Rleg_6112  extracellular solute-binding protein family 1  25.63 
 
 
424 aa  108  2e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.521338  normal 
 
 
-
 
NC_013526  Tter_2025  extracellular solute-binding protein family 1  26.85 
 
 
434 aa  107  4e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000000165485  n/a   
 
 
-
 
NC_011371  Rleg2_6524  extracellular solute-binding protein family 1  25.38 
 
 
424 aa  106  7e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.514278  normal  0.451088 
 
 
-
 
NC_013205  Aaci_1215  extracellular solute-binding protein family 1  27.55 
 
 
446 aa  104  3e-21  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.0000064062  n/a   
 
 
-
 
NC_012028  Hlac_2862  extracellular solute-binding protein family 1  25 
 
 
467 aa  103  8e-21  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_013947  Snas_2733  extracellular solute-binding protein family 1  25.19 
 
 
434 aa  100  3e-20  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0602915  normal  0.13145 
 
 
-
 
NC_013595  Sros_3308  ABC-type sugar transport system periplasmic component-like protein  27.3 
 
 
450 aa  99  1e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.190223 
 
 
-
 
NC_007333  Tfu_0934  putative solute binding lipoprotein  27.84 
 
 
432 aa  96.3  9e-19  Thermobifida fusca YX  Bacteria  normal  0.46058  n/a   
 
 
-
 
NC_013093  Amir_1785  extracellular solute-binding protein family 1  26.33 
 
 
424 aa  95.1  2e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  0.155279  n/a   
 
 
-
 
NC_013595  Sros_7173  sugar transport system (sugar-binding protein)  22.8 
 
 
433 aa  91.3  3e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.119283 
 
 
-
 
NC_012669  Bcav_0556  extracellular solute-binding protein family 1  26.38 
 
 
430 aa  89.7  9e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.71623 
 
 
-
 
NC_013739  Cwoe_3983  extracellular solute-binding protein family 1  25.86 
 
 
456 aa  88.6  2e-16  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2731  extracellular solute-binding protein family 1  24.94 
 
 
454 aa  85.1  0.000000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009620  Smed_4136  extracellular solute-binding protein  29.82 
 
 
424 aa  85.5  0.000000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.518326  normal 
 
 
-
 
NC_010003  Pmob_0828  extracellular solute-binding protein  25 
 
 
424 aa  85.1  0.000000000000002  Petrotoga mobilis SJ95  Bacteria  normal  0.142269  n/a   
 
 
-
 
NC_014210  Ndas_0659  extracellular solute-binding protein family 1  30.86 
 
 
425 aa  85.1  0.000000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.579585  normal  0.728331 
 
 
-
 
NC_013172  Bfae_19280  ABC-type sugar transport system, periplasmic component  25.06 
 
 
416 aa  84.3  0.000000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  0.147667  n/a   
 
 
-
 
NC_014165  Tbis_0842  extracellular solute-binding protein family 1  23.41 
 
 
432 aa  84.7  0.000000000000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.516605 
 
 
-
 
NC_014151  Cfla_2399  extracellular solute-binding protein family 1  23.95 
 
 
433 aa  82  0.00000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00275508 
 
 
-
 
NC_009953  Sare_0393  extracellular solute-binding protein  26.88 
 
 
434 aa  81.6  0.00000000000003  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0128577 
 
 
-
 
NC_012917  PC1_0736  extracellular solute-binding protein family 1  27.09 
 
 
421 aa  80.5  0.00000000000005  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1099  extracellular solute-binding protein  22.87 
 
 
420 aa  80.5  0.00000000000006  Rhodoferax ferrireducens T118  Bacteria  unclonable  0.000000491601  n/a   
 
 
-
 
NC_013131  Caci_5330  extracellular solute-binding protein family 1  23.23 
 
 
438 aa  80.1  0.00000000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.489769  normal  0.341368 
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  28.68 
 
 
424 aa  80.1  0.00000000000007  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_013947  Snas_6282  extracellular solute-binding protein family 1  23.65 
 
 
433 aa  80.1  0.00000000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_04270  extracellular solute-binding protein family 1  25.38 
 
 
418 aa  80.1  0.00000000000008  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2808  extracellular solute-binding protein family 1  23.5 
 
 
430 aa  78.6  0.0000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.512241 
 
 
-
 
NC_013946  Mrub_0284  extracellular solute-binding protein family 1  23.35 
 
 
410 aa  78.2  0.0000000000003  Meiothermus ruber DSM 1279  Bacteria  normal  0.0514987  normal 
 
 
-
 
NC_013421  Pecwa_0972  extracellular solute-binding protein family 1  26.33 
 
 
421 aa  77.8  0.0000000000004  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1060  MalE-type ABC sugar transport system periplasmic component  27.03 
 
 
408 aa  77  0.0000000000006  Bifidobacterium longum DJO10A  Bacteria  normal  0.065415  n/a   
 
 
-
 
NC_013131  Caci_6732  extracellular solute-binding protein family 1  26.64 
 
 
425 aa  76.3  0.000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.255639  normal 
 
 
-
 
NC_013174  Jden_1882  extracellular solute-binding protein family 1  25.83 
 
 
446 aa  75.5  0.000000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.822809 
 
 
-
 
NC_011661  Dtur_0508  extracellular solute-binding protein family 1  24.4 
 
 
421 aa  75.9  0.000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.0000506303  n/a   
 
 
-
 
NC_013521  Sked_27690  ABC-type sugar transport system, periplasmic component  26.74 
 
 
431 aa  75.1  0.000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.340884 
 
 
-
 
NC_009972  Haur_0890  extracellular solute-binding protein  26.54 
 
 
450 aa  75.1  0.000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.315589  n/a   
 
 
-
 
NC_013521  Sked_11600  ABC-type sugar transport system, periplasmic component  24.07 
 
 
444 aa  74.3  0.000000000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.558288  normal  0.039331 
 
 
-
 
NC_013947  Snas_0203  extracellular solute-binding protein family 1  27.09 
 
 
441 aa  73.9  0.000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.346278  normal  0.123927 
 
 
-
 
NC_013947  Snas_2758  extracellular solute-binding protein family 1  25.89 
 
 
423 aa  73.6  0.000000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.736779  normal 
 
 
-
 
NC_013521  Sked_03090  ABC-type sugar transport system, periplasmic component  28.38 
 
 
419 aa  72.8  0.00000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.033461  normal 
 
 
-
 
NC_013595  Sros_6192  ABC-type sugar transport system periplasmic component-like protein  28.1 
 
 
431 aa  72.4  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0222852  normal 
 
 
-
 
NC_008699  Noca_4632  extracellular solute-binding protein  27.35 
 
 
419 aa  71.6  0.00000000002  Nocardioides sp. JS614  Bacteria  normal  0.448727  n/a   
 
 
-
 
NC_011886  Achl_0399  extracellular solute-binding protein family 1  26.84 
 
 
430 aa  71.6  0.00000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013947  Snas_3121  extracellular solute-binding protein family 1  26.06 
 
 
445 aa  71.2  0.00000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00116931 
 
 
-
 
NC_013131  Caci_4955  extracellular solute-binding protein family 1  25.16 
 
 
458 aa  71.2  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.117227  normal 
 
 
-
 
NC_009664  Krad_3566  extracellular solute-binding protein family 1  24.87 
 
 
434 aa  71.6  0.00000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0143758 
 
 
-
 
NC_009832  Spro_2845  extracellular solute-binding protein  23.36 
 
 
424 aa  71.2  0.00000000004  Serratia proteamaculans 568  Bacteria  normal  0.35811  normal  0.0339661 
 
 
-
 
NC_013172  Bfae_29010  ABC-type sugar transport system, periplasmic component  27.25 
 
 
434 aa  70.9  0.00000000005  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_0719  extracellular solute-binding protein family 1  25.59 
 
 
413 aa  70.5  0.00000000006  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.0236757  n/a   
 
 
-
 
NC_011899  Hore_00780  extracellular solute-binding protein family 1  22.08 
 
 
411 aa  70.5  0.00000000006  Halothermothrix orenii H 168  Bacteria  normal  0.0480859  n/a   
 
 
-
 
NC_012858  Rleg_6794  extracellular solute-binding protein family 1  24.64 
 
 
430 aa  70.1  0.00000000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_08420  carbohydrate-binding protein  25.93 
 
 
438 aa  70.1  0.00000000008  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.837516  normal  0.172242 
 
 
-
 
NC_012669  Bcav_3775  extracellular solute-binding protein family 1  25.24 
 
 
459 aa  69.7  0.00000000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.137854  normal 
 
 
-
 
NC_002977  MCA1941  sugar ABC transporter, sugar-binding protein, putative  25.85 
 
 
434 aa  69.3  0.0000000001  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2859  extracellular solute-binding protein  21.97 
 
 
417 aa  69.3  0.0000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.511665  n/a   
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  27.27 
 
 
422 aa  69.3  0.0000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_0829  extracellular solute-binding protein family 1  23.31 
 
 
504 aa  69.7  0.0000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_1099  extracellular solute-binding protein  23.26 
 
 
457 aa  69.7  0.0000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3146  extracellular solute-binding protein  27.19 
 
 
424 aa  68.6  0.0000000002  Arthrobacter sp. FB24  Bacteria  normal  0.0629231  n/a   
 
 
-
 
NC_012669  Bcav_0178  extracellular solute-binding protein family 1  29.19 
 
 
449 aa  68.9  0.0000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2293  extracellular solute-binding protein family 1  26.4 
 
 
425 aa  68.9  0.0000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0656119  normal 
 
 
-
 
NC_013171  Apre_0238  extracellular solute-binding protein family 1  22.89 
 
 
423 aa  68.2  0.0000000003  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_11620  ABC-type sugar transport system, periplasmic component  28.34 
 
 
426 aa  68.2  0.0000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1105  extracellular solute-binding protein family 1  24.87 
 
 
443 aa  67.8  0.0000000004  Thermobispora bispora DSM 43833  Bacteria  normal  0.698754  normal  0.0706181 
 
 
-
 
NC_013595  Sros_1494  ABC-type sugar transport system periplasmic component-like protein  28.94 
 
 
438 aa  67.8  0.0000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_1316  extracellular solute-binding protein  25.34 
 
 
423 aa  67.8  0.0000000004  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  25.2 
 
 
427 aa  67.4  0.0000000005  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0531  extracellular solute-binding protein family 1  23.5 
 
 
429 aa  67  0.0000000006  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_1708  extracellular solute-binding protein family 1  25.57 
 
 
458 aa  66.6  0.0000000007  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.190784  normal 
 
 
-
 
NC_009953  Sare_0747  extracellular solute-binding protein  26.77 
 
 
433 aa  67  0.0000000007  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00190936 
 
 
-
 
NC_013530  Xcel_0917  extracellular solute-binding protein family 1  27.35 
 
 
455 aa  66.6  0.0000000008  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.728334  n/a   
 
 
-
 
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