More than 300 homologs were found in PanDaTox collection
for query gene Shew_3506 on replicon NC_009092
Organism: Shewanella loihica PV-4



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009092  Shew_3506  two component LuxR family transcriptional regulator  100 
 
 		 198 aa  392  1e-108  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_4591  two component LuxR family transcriptional regulator  83.33 
 
 		 198 aa  336  9.999999999999999e-92  Shewanella woodyi ATCC 51908  Bacteria  normal  1  unclonable  0.00000001788 
 
 
-
 
NC_009052  Sbal_0347  two component LuxR family transcriptional regulator  81.31 
 
 		 198 aa  307  5e-83  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_0345  two component LuxR family transcriptional regulator  81.31 
 
 		 198 aa  307  5e-83  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_0352  two component LuxR family transcriptional regulator  80.81 
 
 		 198 aa  305  3e-82  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011663  Sbal223_0355  two component transcriptional regulator, LuxR family  80.81 
 
 		 198 aa  305  4.0000000000000004e-82  Shewanella baltica OS223  Bacteria  normal  0.881439  hitchhiker  0.0000000668977 
 
 
-
 
NC_008321  Shewmr4_3621  two component LuxR family transcriptional regulator  80.81 
 
 		 198 aa  304  5.0000000000000004e-82  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_3818  two component LuxR family transcriptional regulator  80.81 
 
 		 198 aa  304  5.0000000000000004e-82  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_0351  LuxR family DNA-binding response regulator  80.3 
 
 		 198 aa  303  9.000000000000001e-82  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_0322  two component LuxR family transcriptional regulator  80.3 
 
 		 198 aa  303  1.0000000000000001e-81  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007954  Sden_3475  response regulator receiver  75.36 
 
 		 207 aa  294  6e-79  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_0357  two component transcriptional regulator, LuxR family protein  76.73 
 
 		 202 aa  286  1e-76  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_0258  two component transcriptional regulator, LuxR family  61.31 
 
 		 200 aa  238  4e-62  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007912  Sde_3820  two component LuxR family transcriptional regulator  58.33 
 
 		 205 aa  235  4e-61  Saccharophagus degradans 2-40  Bacteria  normal  0.113202  normal  1 
 
 
-
 
NC_011138  MADE_03365  DNA-binding response regulator, LuxR family protein  54.55 
 
 		 205 aa  217  7e-56  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1264  two component LuxR family transcriptional regulator  61.81 
 
 		 200 aa  213  9.999999999999999e-55  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  0.86401 
 
 
-
 
NC_009674  Bcer98_3871  two component LuxR family transcriptional regulator  52.76 
 
 		 200 aa  210  1e-53  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00685623  n/a   
 
 
-
 
NC_011772  BCG9842_B5477  DNA-binding response regulator  51.76 
 
 		 200 aa  204  9e-52  Bacillus cereus G9842  Bacteria  hitchhiker  0.00156963  hitchhiker  0.00000000000102018 
 
 
-
 
NC_008347  Mmar10_2543  two component LuxR family transcriptional regulator  53.77 
 
 		 202 aa  204  9e-52  Maricaulis maris MCS10  Bacteria  normal  0.446643  normal  1 
 
 
-
 
NC_010184  BcerKBAB4_5150  two component LuxR family transcriptional regulator  51.26 
 
 		 200 aa  201  5e-51  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A5475  DNA-binding response regulator  51.26 
 
 		 200 aa  201  9e-51  Bacillus cereus B4264  Bacteria  normal  0.132453  n/a   
 
 
-
 
NC_008025  Dgeo_0183  two component LuxR family transcriptional regulator  56.78 
 
 		 200 aa  200  9.999999999999999e-51  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.541303  normal  0.654013 
 
 
-
 
NC_011658  BCAH187_A5531  DNA-binding response regulator  50.75 
 
 		 200 aa  199  3e-50  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_005945  BAS5200  DNA-binding response regulator  50.75 
 
 		 200 aa  198  3.9999999999999996e-50  Bacillus anthracis str. Sterne  Bacteria  normal  1  n/a   
 
 
-
 
NC_007530  GBAA_5597  DNA-binding response regulator  50.75 
 
 		 200 aa  198  3.9999999999999996e-50  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_5482  DNA-binding response regulator  50.25 
 
 		 200 aa  198  5e-50  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK5050  DNA-binding response regulator  50.75 
 
 		 200 aa  197  6e-50  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_005957  BT9727_5034  DNA-binding response regulator  50.75 
 
 		 200 aa  197  7e-50  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.617082  n/a   
 
 
-
 
NC_011773  BCAH820_5444  DNA-binding response regulator  50.75 
 
 		 200 aa  197  7e-50  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_014165  Tbis_0907  LuxR family two component transcriptional regulator  51 
 
 		 197 aa  197  1.0000000000000001e-49  Thermobispora bispora DSM 43833  Bacteria  normal  0.365102  normal  1 
 
 
-
 
NC_011365  Gdia_1908  two component transcriptional regulator, LuxR family  52 
 
 		 201 aa  185  5e-46  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  0.264232 
 
 
-
 
NC_013131  Caci_0763  two component transcriptional regulator, LuxR family  49.5 
 
 		 208 aa  184  5e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.313515 
 
 
-
 
NC_013595  Sros_1680  response regulator receiver protein  49.75 
 
 		 197 aa  183  1.0000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.516841 
 
 
-
 
NC_008578  Acel_0195  two component LuxR family transcriptional regulator  48.5 
 
 		 205 aa  182  2.0000000000000003e-45  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  0.116105 
 
 
-
 
NC_014211  Ndas_5200  two component transcriptional regulator, LuxR family  49 
 
 		 223 aa  181  6e-45  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0156716  normal  0.415255 
 
 
-
 
NC_013235  Namu_3006  two component transcriptional regulator, LuxR family  45.77 
 
 		 204 aa  180  9.000000000000001e-45  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000248543  hitchhiker  0.000146029 
 
 
-
 
NC_014165  Tbis_1720  LuxR family two component transcriptional regulator  49.5 
 
 		 201 aa  179  2e-44  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013174  Jden_0118  two component transcriptional regulator, LuxR family  45.5 
 
 		 205 aa  178  4.999999999999999e-44  Jonesia denitrificans DSM 20603  Bacteria  normal  0.137239  normal  0.184056 
 
 
-
 
NC_013757  Gobs_1641  two component transcriptional regulator, LuxR family  47.26 
 
 		 201 aa  176  3e-43  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_2068  two component transcriptional regulator, LuxR family  46.27 
 
 		 212 aa  176  3e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.385073  normal  0.894995 
 
 
-
 
NC_007333  Tfu_0288  LuxR response regulator receiver  47.76 
 
 		 201 aa  174  7e-43  Thermobifida fusca YX  Bacteria  normal  0.0935286  n/a   
 
 
-
 
NC_008532  STER_1290  DNA-binding response regulator  43.22 
 
 		 200 aa  173  9.999999999999999e-43  Streptococcus thermophilus LMD-9  Bacteria  normal  0.29796  n/a   
 
 
-
 
NC_012803  Mlut_16250  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  46.27 
 
 		 224 aa  173  9.999999999999999e-43  Micrococcus luteus NCTC 2665  Bacteria  normal  0.216822  n/a   
 
 
-
 
NC_013172  Bfae_06340  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  43.6 
 
 		 211 aa  172  1.9999999999999998e-42  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_4055  response regulator receiver protein  48.5 
 
 		 201 aa  172  1.9999999999999998e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.0367887 
 
 
-
 
NC_013739  Cwoe_4753  two component transcriptional regulator, LuxR family  46.5 
 
 		 201 aa  172  1.9999999999999998e-42  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  0.226774 
 
 
-
 
NC_012669  Bcav_0286  two component transcriptional regulator, LuxR family  45.27 
 
 		 203 aa  172  2.9999999999999996e-42  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.784033  normal  0.130384 
 
 
-
 
NC_013205  Aaci_0655  two component transcriptional regulator, LuxR family  45.73 
 
 		 200 aa  171  7.999999999999999e-42  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_02200  two component transcriptional regulator, LuxR family  45.23 
 
 		 208 aa  171  9e-42  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013169  Ksed_00990  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  43.72 
 
 		 201 aa  169  3e-41  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.666199  normal  1 
 
 
-
 
NC_013235  Namu_2610  two component transcriptional regulator, LuxR family  57.64 
 
 		 144 aa  167  1e-40  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00000438854  normal  0.0112001 
 
 
-
 
NC_013510  Tcur_2957  two component transcriptional regulator, LuxR family  46 
 
 		 201 aa  166  2e-40  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00144362  n/a   
 
 
-
 
NC_013595  Sros_8146  response regulator receiver protein  45.77 
 
 		 202 aa  166  2.9999999999999998e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.524184 
 
 
-
 
NC_013595  Sros_0091  response regulator receiver protein  45.05 
 
 		 204 aa  164  1.0000000000000001e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  0.520551  normal  1 
 
 
-
 
NC_013510  Tcur_2770  two component transcriptional regulator, LuxR family  42 
 
 		 201 aa  162  4.0000000000000004e-39  Thermomonospora curvata DSM 43183  Bacteria  normal  0.282039  n/a   
 
 
-
 
NC_012669  Bcav_1588  two component transcriptional regulator, LuxR family  44 
 
 		 201 aa  160  9e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.117504  normal  1 
 
 
-
 
NC_009921  Franean1_0528  two component LuxR family transcriptional regulator  43 
 
 		 201 aa  159  2e-38  Frankia sp. EAN1pec  Bacteria  normal  0.653057  normal  1 
 
 
-
 
NC_013093  Amir_1937  two component transcriptional regulator, LuxR family  45 
 
 		 201 aa  159  3e-38  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013521  Sked_03860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.5 
 
 		 204 aa  159  4e-38  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0649288  normal  0.281143 
 
 
-
 
NC_013131  Caci_1897  two component transcriptional regulator, LuxR family  42.21 
 
 		 200 aa  156  2e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.299419  normal  1 
 
 
-
 
NC_009487  SaurJH9_1383  two component LuxR family transcriptional regulator  40.61 
 
 		 200 aa  155  4e-37  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000320378  n/a   
 
 
-
 
NC_009632  SaurJH1_1410  response regulator receiver  40.61 
 
 		 200 aa  155  4e-37  Staphylococcus aureus subsp. aureus JH1  Bacteria  hitchhiker  0.000440417  n/a   
 
 
-
 
NC_013947  Snas_4572  two component transcriptional regulator, LuxR family  44.5 
 
 		 200 aa  153  2e-36  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.318618  normal  0.115695 
 
 
-
 
NC_013131  Caci_0691  two component transcriptional regulator, LuxR family  45.79 
 
 		 190 aa  150  1e-35  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_4598  response regulator receiver protein  42.5 
 
 		 201 aa  150  1e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.053163 
 
 
-
 
NC_013521  Sked_06600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  40.5 
 
 		 200 aa  150  1e-35  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.680692  normal  1 
 
 
-
 
NC_014210  Ndas_1808  two component transcriptional regulator, LuxR family  43.22 
 
 		 201 aa  149  2e-35  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.207018 
 
 
-
 
NC_013131  Caci_3654  two component transcriptional regulator, LuxR family  40 
 
 		 201 aa  149  2e-35  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.0345388 
 
 
-
 
NC_013739  Cwoe_5628  two component transcriptional regulator, LuxR family  42 
 
 		 200 aa  148  4e-35  Conexibacter woesei DSM 14684  Bacteria  normal  0.946433  normal  0.876589 
 
 
-
 
NC_013159  Svir_11510  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  42.5 
 
 		 203 aa  148  6e-35  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.575058  normal  1 
 
 
-
 
NC_013595  Sros_6441  response regulator receiver protein  39.5 
 
 		 227 aa  147  1.0000000000000001e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.176234  normal  0.0893652 
 
 
-
 
NC_014210  Ndas_1079  two component transcriptional regulator, LuxR family  39.59 
 
 		 200 aa  144  7.0000000000000006e-34  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.782019  normal  0.0499592 
 
 
-
 
NC_013947  Snas_0503  two component transcriptional regulator, LuxR family  41 
 
 		 202 aa  144  9e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.900292 
 
 
-
 
NC_002976  SERP0889  LuxR family DNA-binding response regulator  34.17 
 
 		 200 aa  143  1e-33  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.0000916195  n/a   
 
 
-
 
NC_013510  Tcur_1624  two component transcriptional regulator, LuxR family  42 
 
 		 201 aa  142  4e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0305603  n/a   
 
 
-
 
NC_014158  Tpau_3534  two component transcriptional regulator, LuxR family  40 
 
 		 206 aa  141  8e-33  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  38.76 
 
 		 218 aa  140  9.999999999999999e-33  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  37.85 
 
 		 226 aa  133  1.9999999999999998e-30  Conexibacter woesei DSM 14684  Bacteria  normal  1  hitchhiker  0.00432991 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  36.62 
 
 		 220 aa  132  3e-30  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_0676  two component transcriptional regulator, LuxR family  37.25 
 
 		 215 aa  131  6.999999999999999e-30  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  36.7 
 
 		 231 aa  131  7.999999999999999e-30  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal  1 
 
 
-
 
NC_009523  RoseRS_4258  two component LuxR family transcriptional regulator  37.56 
 
 		 216 aa  130  9e-30  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_4334  response regulator receiver protein  41.5 
 
 		 200 aa  130  1.0000000000000001e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.574495  normal  0.636855 
 
 
-
 
NC_013530  Xcel_0606  two component transcriptional regulator, LuxR family  36.95 
 
 		 212 aa  129  2.0000000000000002e-29  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  38.46 
 
 		 216 aa  129  2.0000000000000002e-29  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  36.02 
 
 		 218 aa  130  2.0000000000000002e-29  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013757  Gobs_4836  two component transcriptional regulator, LuxR family  42.5 
 
 		 201 aa  129  3e-29  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.16538  n/a   
 
 
-
 
NC_013947  Snas_5262  two component transcriptional regulator, LuxR family  36.92 
 
 		 219 aa  128  5.0000000000000004e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  34.58 
 
 		 234 aa  128  7.000000000000001e-29  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  35.71 
 
 		 218 aa  127  8.000000000000001e-29  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_014151  Cfla_2683  two component transcriptional regulator, LuxR family  35.29 
 
 		 209 aa  127  9.000000000000001e-29  Cellulomonas flavigena DSM 20109  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  36.06 
 
 		 219 aa  127  1.0000000000000001e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  37.98 
 
 		 217 aa  127  1.0000000000000001e-28  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013521  Sked_29940  two component transcriptional regulator, LuxR family  34.48 
 
 		 234 aa  127  1.0000000000000001e-28  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  0.683883 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  34.29 
 
 		 218 aa  126  2.0000000000000002e-28  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011772  BCG9842_B3078  DNA-binding response regulator, LuxR family  34.78 
 
 		 213 aa  126  2.0000000000000002e-28  Bacillus cereus G9842  Bacteria  normal  1  hitchhiker  0.000000185138 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  34.98 
 
 		 216 aa  126  2.0000000000000002e-28  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  34.29 
 
 		 218 aa  126  2.0000000000000002e-28  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  34.51 
 
 		 242 aa  126  2.0000000000000002e-28  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_008697  Noca_4896  response regulator receiver  33.96 
 
 		 215 aa  125  3e-28  Nocardioides sp. JS614  Bacteria  normal  0.446448  normal  0.220667 
 
 
-
 
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