More than 300 homologs were found in PanDaTox collection
for query gene Shew_0430 on replicon NC_009092
Organism: Shewanella loihica PV-4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009092  Shew_0430  histone family protein DNA-binding protein  100 
 
 
90 aa  177  5.999999999999999e-44  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal 
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  95.56 
 
 
90 aa  171  2.9999999999999996e-42  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  93.33 
 
 
90 aa  168  2e-41  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  93.33 
 
 
90 aa  168  2e-41  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  88.89 
 
 
90 aa  160  5.0000000000000005e-39  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  87.78 
 
 
90 aa  159  1e-38  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0547  histone family protein DNA-binding protein  83.33 
 
 
90 aa  155  3e-37  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0548  histone family protein DNA-binding protein  82.22 
 
 
90 aa  153  7e-37  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0507  histone family protein DNA-binding protein  82.22 
 
 
90 aa  152  2e-36  Shewanella baltica OS155  Bacteria  normal  0.0267079  n/a   
 
 
-
 
NC_004347  SO_0548  HU family DNA-binding protein  81.11 
 
 
90 aa  152  2e-36  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_3158  histone-like DNA-binding protein  81.11 
 
 
90 aa  152  2e-36  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3817  histone family protein DNA-binding protein  82.22 
 
 
90 aa  152  2e-36  Shewanella baltica OS185  Bacteria  normal  0.531766  n/a   
 
 
-
 
NC_011663  Sbal223_3761  histone family protein DNA-binding protein  82.22 
 
 
90 aa  152  2e-36  Shewanella baltica OS223  Bacteria  normal  normal  0.768478 
 
 
-
 
NC_009997  Sbal195_3943  histone family protein DNA-binding protein  82.22 
 
 
90 aa  152  2e-36  Shewanella baltica OS195  Bacteria  normal  0.37618  normal 
 
 
-
 
NC_008322  Shewmr7_3482  histone family protein DNA-binding protein  82.22 
 
 
90 aa  152  2e-36  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3325  histone family protein DNA-binding protein  82.22 
 
 
90 aa  152  2e-36  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  64.44 
 
 
90 aa  121  3e-27  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  64.44 
 
 
90 aa  120  4e-27  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  64.44 
 
 
91 aa  121  4e-27  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  63.33 
 
 
90 aa  120  6e-27  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  63.33 
 
 
90 aa  120  7e-27  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  63.33 
 
 
90 aa  118  3e-26  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  63.33 
 
 
90 aa  118  3e-26  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  63.33 
 
 
90 aa  118  3e-26  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  63.33 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  63.33 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  63.33 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  63.33 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  63.33 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  63.33 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  63.33 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  63.33 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_003910  CPS_2063  HU family DNA-binding protein  60 
 
 
91 aa  115  9.999999999999999e-26  Colwellia psychrerythraea 34H  Bacteria  normal  0.832344  n/a   
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  62.22 
 
 
90 aa  116  9.999999999999999e-26  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  63.33 
 
 
91 aa  115  1.9999999999999998e-25  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_009727  CBUD_0508  DNA-binding protein HU  58.89 
 
 
94 aa  115  3e-25  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.000000377509  n/a   
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  58.89 
 
 
90 aa  115  3e-25  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1641  DNA-binding protein HU  58.89 
 
 
94 aa  115  3e-25  Coxiella burnetii RSA 331  Bacteria  unclonable  7.02248e-19  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  58.89 
 
 
90 aa  115  3e-25  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_003910  CPS_1873  HU family DNA-binding protein  61.11 
 
 
91 aa  114  3.9999999999999997e-25  Colwellia psychrerythraea 34H  Bacteria  normal  0.972501  n/a   
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  58.89 
 
 
92 aa  114  3.9999999999999997e-25  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  58.89 
 
 
90 aa  114  3.9999999999999997e-25  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2014  histone family protein DNA-binding protein  64.44 
 
 
90 aa  113  6.9999999999999995e-25  Thauera sp. MZ1T  Bacteria  decreased coverage  0.000105311  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  112  1.0000000000000001e-24  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  57.78 
 
 
90 aa  112  1.0000000000000001e-24  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  57.78 
 
 
90 aa  112  1.0000000000000001e-24  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  57.78 
 
 
90 aa  113  1.0000000000000001e-24  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  112  1.0000000000000001e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  112  1.0000000000000001e-24  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  57.3 
 
 
90 aa  112  2.0000000000000002e-24  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_009783  VIBHAR_01420  nucleoid DNA-binding protein  56.67 
 
 
90 aa  112  2.0000000000000002e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  57.78 
 
 
90 aa  112  2.0000000000000002e-24  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  58.89 
 
 
90 aa  112  2.0000000000000002e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  111  3e-24  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  57.78 
 
 
90 aa  111  4.0000000000000004e-24  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  57.78 
 
 
90 aa  111  4.0000000000000004e-24  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  111  4.0000000000000004e-24  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  111  4.0000000000000004e-24  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  111  4.0000000000000004e-24  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  111  4.0000000000000004e-24  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  111  4.0000000000000004e-24  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  111  4.0000000000000004e-24  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_012892  B21_00396  hypothetical protein  57.78 
 
 
90 aa  111  4.0000000000000004e-24  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1626  histone family protein DNA-binding protein  58.89 
 
 
90 aa  111  4.0000000000000004e-24  Psychrobacter sp. PRwf-1  Bacteria  unclonable  0.00000000000133039  hitchhiker  0.00000000638901 
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  110  5e-24  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  110  5e-24  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  110  5e-24  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  110  5e-24  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  110  5e-24  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  57.78 
 
 
91 aa  110  6e-24  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_007517  Gmet_1608  histone-like DNA-binding protein  61.8 
 
 
96 aa  110  7.000000000000001e-24  Geobacter metallireducens GS-15  Bacteria  unclonable  5.49082e-20  normal 
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  110  8.000000000000001e-24  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  57.78 
 
 
98 aa  110  8.000000000000001e-24  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_009483  Gura_4407  histone family protein DNA-binding protein  60.67 
 
 
94 aa  110  9e-24  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000192025  n/a   
 
 
-
 
NC_002939  GSU3132  DNA-binding protein HU  59.55 
 
 
94 aa  109  1.0000000000000001e-23  Geobacter sulfurreducens PCA  Bacteria  normal  0.246817  n/a   
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  57.3 
 
 
90 aa  109  1.0000000000000001e-23  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_008709  Ping_3218  DNA-binding protein HU alpha subunit  56.67 
 
 
91 aa  109  1.0000000000000001e-23  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.585838 
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  57.78 
 
 
90 aa  109  1.0000000000000001e-23  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_007517  Gmet_0355  histone-like DNA-binding protein  59.55 
 
 
94 aa  109  1.0000000000000001e-23  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00204011  normal  0.390975 
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  57.3 
 
 
90 aa  109  1.0000000000000001e-23  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  55.56 
 
 
90 aa  109  1.0000000000000001e-23  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_009674  Bcer98_1763  histone family protein DNA-binding protein  55.06 
 
 
90 aa  109  1.0000000000000001e-23  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.203917  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  57.3 
 
 
90 aa  109  1.0000000000000001e-23  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  59.55 
 
 
91 aa  108  2.0000000000000002e-23  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2184  histone family protein DNA-binding protein  55.06 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.170143  n/a   
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  53.33 
 
 
90 aa  108  2.0000000000000002e-23  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  55.56 
 
 
101 aa  108  2.0000000000000002e-23  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_009457  VC0395_A1509  DNA-binding protein HU-beta  55.56 
 
 
90 aa  108  2.0000000000000002e-23  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000490467  n/a   
 
 
-
 
NC_011772  BCG9842_B2983  DNA-binding protein HU  53.93 
 
 
90 aa  108  3e-23  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A2342  DNA-binding protein HU  53.93 
 
 
90 aa  108  3e-23  Bacillus cereus B4264  Bacteria  normal  0.868034  n/a   
 
 
-
 
NC_003909  BCE_2407  DNA-binding protein HU  53.93 
 
 
90 aa  107  4.0000000000000004e-23  Bacillus cereus ATCC 10987  Bacteria  normal  0.020348  n/a   
 
 
-
 
NC_005945  BAS2213  DNA-binding protein HU  53.93 
 
 
90 aa  107  4.0000000000000004e-23  Bacillus anthracis str. Sterne  Bacteria  normal  0.519209  n/a   
 
 
-
 
NC_005957  BT9727_2152  DNA-binding protein HU  53.93 
 
 
90 aa  107  4.0000000000000004e-23  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0274093  n/a   
 
 
-
 
NC_006274  BCZK2136  DNA-binding protein HU  53.93 
 
 
90 aa  107  4.0000000000000004e-23  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1826  hypothetical protein  59.55 
 
 
92 aa  107  4.0000000000000004e-23  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1822  hypothetical protein  59.55 
 
 
92 aa  107  4.0000000000000004e-23  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007530  GBAA_2377  DNA-binding protein HU  53.93 
 
 
90 aa  107  4.0000000000000004e-23  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A2477  DNA-binding protein HU  53.93 
 
 
90 aa  107  4.0000000000000004e-23  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2395  DNA-binding protein HU  53.93 
 
 
90 aa  107  4.0000000000000004e-23  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  55.56 
 
 
90 aa  107  5e-23  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
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