More than 300 homologs were found in PanDaTox collection
for query gene Shel_01960 on replicon NC_013165
Organism: Slackia heliotrinireducens DSM 20476



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013165  Shel_01960  cell envelope-related function transcriptional attenuator common domain protein  100 
 
 
490 aa  990    Slackia heliotrinireducens DSM 20476  Bacteria  hitchhiker  0.00481524  normal 
 
 
-
 
NC_013204  Elen_3000  cell envelope-related transcriptional attenuator  48.48 
 
 
495 aa  427  1e-118  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  43.06 
 
 
512 aa  389  1e-107  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_013165  Shel_01950  cell envelope-related function transcriptional attenuator common domain protein  50 
 
 
516 aa  342  8e-93  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.000132864  normal 
 
 
-
 
NC_013170  Ccur_08290  cell envelope-related function transcriptional attenuator common domain protein  49.86 
 
 
443 aa  328  2.0000000000000001e-88  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.154905  normal  0.235154 
 
 
-
 
NC_013203  Apar_0187  cell envelope-related transcriptional attenuator  42.08 
 
 
563 aa  318  1e-85  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.234515 
 
 
-
 
NC_013204  Elen_3081  cell envelope-related transcriptional attenuator  39.24 
 
 
531 aa  218  2.9999999999999998e-55  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013203  Apar_1295  cell envelope-related transcriptional attenuator  34.35 
 
 
407 aa  172  1e-41  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.865299 
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  33.68 
 
 
349 aa  157  5.0000000000000005e-37  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2449  cell envelope-related transcriptional attenuator  33.77 
 
 
406 aa  157  6e-37  Eggerthella lenta DSM 2243  Bacteria  hitchhiker  0.00377769  normal 
 
 
-
 
NC_013204  Elen_1106  cell envelope-related transcriptional attenuator  30.67 
 
 
497 aa  153  7e-36  Eggerthella lenta DSM 2243  Bacteria  normal  0.0413788  hitchhiker  0.0000000000000467776 
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  34.32 
 
 
319 aa  150  5e-35  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_011899  Hore_13390  cell envelope-related transcriptional attenuator  29.09 
 
 
405 aa  149  9e-35  Halothermothrix orenii H 168  Bacteria  normal  0.557039  n/a   
 
 
-
 
NC_009674  Bcer98_0803  cell envelope-related transcriptional attenuator  33.12 
 
 
317 aa  147  5e-34  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_15160  cell envelope-related function transcriptional attenuator common domain protein  30.13 
 
 
528 aa  145  2e-33  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.481311  normal  0.251457 
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  35.47 
 
 
377 aa  139  1e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4992  cell envelope-related transcriptional attenuator  35.47 
 
 
374 aa  139  1e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2257  cell envelope-related transcriptional attenuator  31.74 
 
 
362 aa  138  2e-31  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.518809 
 
 
-
 
NC_010184  BcerKBAB4_0519  cell envelope-related transcriptional attenuator  34.31 
 
 
338 aa  138  3.0000000000000003e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5288  transcription antiterminator, LytR family  36.09 
 
 
375 aa  137  5e-31  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000327862 
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  36.09 
 
 
375 aa  137  6.0000000000000005e-31  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  36.09 
 
 
375 aa  137  6.0000000000000005e-31  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  36.09 
 
 
375 aa  137  6.0000000000000005e-31  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  36.09 
 
 
375 aa  137  6.0000000000000005e-31  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0523  cell envelope-related transcriptional attenuator  33.46 
 
 
337 aa  136  7.000000000000001e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1876  cell envelope-related transcriptional attenuator  36.48 
 
 
455 aa  136  8e-31  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000275813  normal 
 
 
-
 
NC_007604  Synpcc7942_1360  cell envelope-related transcriptional attenuator  38.66 
 
 
436 aa  136  9e-31  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_3735  cell envelope-related transcriptional attenuator  36.52 
 
 
383 aa  135  9.999999999999999e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4745  cell envelope-related transcriptional attenuator  32.72 
 
 
584 aa  136  9.999999999999999e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1996  cell envelope-related transcriptional attenuator  31.54 
 
 
527 aa  135  1.9999999999999998e-30  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.177975 
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  34.62 
 
 
377 aa  135  1.9999999999999998e-30  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  34.76 
 
 
374 aa  135  1.9999999999999998e-30  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2873  cell envelope-related transcriptional attenuator  32.87 
 
 
475 aa  134  3.9999999999999996e-30  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010184  BcerKBAB4_1838  cell envelope-related transcriptional attenuator  32.35 
 
 
333 aa  134  5e-30  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00343174  n/a   
 
 
-
 
NC_011772  BCG9842_B5640  transcription antiterminator, LytR family  34.76 
 
 
372 aa  134  5e-30  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000247251 
 
 
-
 
NC_011725  BCB4264_A1975  transcription antiterminator, LytR family  32.22 
 
 
333 aa  133  6.999999999999999e-30  Bacillus cereus B4264  Bacteria  normal  0.258453  n/a   
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  40 
 
 
307 aa  132  1.0000000000000001e-29  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_009674  Bcer98_1499  cell envelope-related transcriptional attenuator  37.1 
 
 
329 aa  132  1.0000000000000001e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.000000186761  n/a   
 
 
-
 
NC_013522  Taci_0893  cell envelope-related transcriptional attenuator  29.48 
 
 
453 aa  131  2.0000000000000002e-29  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.301121  n/a   
 
 
-
 
NC_005945  BAS1830  LytR family transcription antiterminator  32.22 
 
 
333 aa  131  2.0000000000000002e-29  Bacillus anthracis str. Sterne  Bacteria  normal  0.241912  n/a   
 
 
-
 
NC_005957  BT9727_1804  LytR family transcriptional regulator  32.22 
 
 
333 aa  131  2.0000000000000002e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00220424  n/a   
 
 
-
 
NC_006274  BCZK1787  LytR family transcriptional regulator  32.22 
 
 
335 aa  131  2.0000000000000002e-29  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1973  LytR family transcription antiterminator  32.22 
 
 
333 aa  131  2.0000000000000002e-29  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3352  transcription antiterminator, LytR family  31.39 
 
 
335 aa  132  2.0000000000000002e-29  Bacillus cereus G9842  Bacteria  hitchhiker  0.0000199263  hitchhiker  0.0000000000000086496 
 
 
-
 
NC_013739  Cwoe_5265  cell envelope-related transcriptional attenuator  34.78 
 
 
414 aa  131  2.0000000000000002e-29  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.534178 
 
 
-
 
NC_011773  BCAH820_2008  transcription antiterminator, LytR family  32.22 
 
 
333 aa  131  2.0000000000000002e-29  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  6.0610299999999994e-43 
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  32.9 
 
 
453 aa  130  4.0000000000000003e-29  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_003909  BCE_2056  LytR family transcription antiterminator  32.22 
 
 
333 aa  130  5.0000000000000004e-29  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00905786  n/a   
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  29.68 
 
 
478 aa  130  7.000000000000001e-29  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A2078  transcription antiterminator, LytR family  31.85 
 
 
333 aa  129  1.0000000000000001e-28  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000000542577  n/a   
 
 
-
 
NC_010320  Teth514_2233  cell envelope-related transcriptional attenuator  32.01 
 
 
303 aa  129  1.0000000000000001e-28  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0673  LytR family transcription antiterminator  34.5 
 
 
337 aa  129  2.0000000000000002e-28  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3347  transcriptional regulator LytR, attenuator for lytABC and lytR expression  32.46 
 
 
345 aa  128  2.0000000000000002e-28  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000000255205  n/a   
 
 
-
 
NC_010424  Daud_2095  cell envelope-related transcriptional attenuator  31.35 
 
 
411 aa  129  2.0000000000000002e-28  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2378  cell envelope-related function transcriptional attenuator  29.26 
 
 
437 aa  128  2.0000000000000002e-28  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0983623  n/a   
 
 
-
 
NC_008346  Swol_0125  putative transcriptional regulator  33.68 
 
 
380 aa  129  2.0000000000000002e-28  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00440963  n/a   
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  35.74 
 
 
307 aa  128  3e-28  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_009767  Rcas_0369  cell envelope-related transcriptional attenuator  36.25 
 
 
356 aa  127  4.0000000000000003e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.117824  normal  0.3088 
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  34.35 
 
 
390 aa  127  4.0000000000000003e-28  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0732  transcription antiterminator, LytR family  36.24 
 
 
338 aa  127  5e-28  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0572  LytR family transcription antiterminator  35.78 
 
 
337 aa  127  6e-28  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0605  LytR family transcription antiterminator  35.78 
 
 
333 aa  127  6e-28  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0661  transcription antiterminator, LytR family  35.78 
 
 
338 aa  127  6e-28  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.34714e-25 
 
 
-
 
NC_006274  BCZK0516  LytR family transcriptional regulator  37.57 
 
 
337 aa  126  7e-28  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1893  transcriptional regulator, putative  35.89 
 
 
316 aa  126  1e-27  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3385  membrane-bound transcriptional regulator LytR  32.47 
 
 
313 aa  126  1e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_0131  cell envelope-related transcriptional attenuator  33.1 
 
 
353 aa  125  1e-27  Roseiflexus sp. RS-1  Bacteria  normal  0.763008  normal 
 
 
-
 
NC_005957  BT9727_0516  LytR family transcriptional regulator  35.32 
 
 
337 aa  125  2e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1399  cell envelope-related transcriptional attenuator  35.09 
 
 
414 aa  125  2e-27  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0643  transcription antiterminator, LytR family  37.57 
 
 
338 aa  125  2e-27  Bacillus cereus B4264  Bacteria  normal  0.849345  n/a   
 
 
-
 
NC_008530  LGAS_1715  transcriptional regulator  32.03 
 
 
374 aa  125  2e-27  Lactobacillus gasseri ATCC 33323  Bacteria  normal  hitchhiker  0.00565214 
 
 
-
 
NC_009632  SaurJH1_2377  transcription attenuator LytR  30.8 
 
 
318 aa  124  3e-27  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  41.36 
 
 
320 aa  124  3e-27  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4695  transcription antiterminator, LytR family  37.57 
 
 
338 aa  124  3e-27  Bacillus cereus G9842  Bacteria  normal  0.541641  hitchhiker  0.0000000308245 
 
 
-
 
NC_009487  SaurJH9_2334  cell envelope-related transcriptional attenuator  30.8 
 
 
318 aa  124  3e-27  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.591324  n/a   
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  37.73 
 
 
336 aa  124  5e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_008578  Acel_0411  cell envelope-related transcriptional attenuator  27.41 
 
 
520 aa  123  6e-27  Acidothermus cellulolyticus 11B  Bacteria  normal  0.118906  normal 
 
 
-
 
NC_003909  BCE_3605  LytR family transcription antiterminator  31.23 
 
 
345 aa  123  9e-27  Bacillus cereus ATCC 10987  Bacteria  normal  0.0149783  n/a   
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  27.53 
 
 
468 aa  123  9e-27  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  29.02 
 
 
504 aa  123  9e-27  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_011658  BCAH187_A0946  transcription antiterminator, LytR family  32.59 
 
 
400 aa  122  9.999999999999999e-27  Bacillus cereus AH187  Bacteria  hitchhiker  0.00000012569  n/a   
 
 
-
 
NC_006274  BCZK3295  transcriptional regulator LytR, attenuator for lytABC and lytR expression  32.03 
 
 
345 aa  122  9.999999999999999e-27  Bacillus cereus E33L  Bacteria  normal  0.189328  n/a   
 
 
-
 
NC_009767  Rcas_0015  cell envelope-related transcriptional attenuator  35.9 
 
 
503 aa  122  9.999999999999999e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0348648  hitchhiker  0.0000779954 
 
 
-
 
NC_008699  Noca_0784  cell envelope-related transcriptional attenuator  30.75 
 
 
400 aa  122  9.999999999999999e-27  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A3613  transcription antiterminator, LytR family  31.23 
 
 
345 aa  122  9.999999999999999e-27  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000276906  n/a   
 
 
-
 
NC_009523  RoseRS_1714  cell envelope-related transcriptional attenuator  31.92 
 
 
528 aa  122  9.999999999999999e-27  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.603952 
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  32.47 
 
 
509 aa  121  1.9999999999999998e-26  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2090  transcription regulator LytR-like protein  28.63 
 
 
437 aa  121  1.9999999999999998e-26  Clostridium perfringens SM101  Bacteria  normal  0.853394  n/a   
 
 
-
 
NC_011729  PCC7424_2953  cell envelope-related transcriptional attenuator  32.94 
 
 
502 aa  122  1.9999999999999998e-26  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.873931 
 
 
-
 
NC_011773  BCAH820_3598  transcription antiterminator, LytR family  31.52 
 
 
345 aa  121  3e-26  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000000000156827 
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  29.32 
 
 
506 aa  121  3e-26  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_011772  BCG9842_B4498  transcription antiterminator, LytR family  32.96 
 
 
399 aa  121  3e-26  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0000000000182536 
 
 
-
 
NC_005945  BAS3381  LytR family transcription antiterminator  31.52 
 
 
345 aa  120  3.9999999999999996e-26  Bacillus anthracis str. Sterne  Bacteria  normal  0.288134  n/a   
 
 
-
 
NC_007530  GBAA_3647  LytR family transcription antiterminator  31.52 
 
 
345 aa  120  3.9999999999999996e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0513784  n/a   
 
 
-
 
NC_011725  BCB4264_A0838  transcription antiterminator, LytR family  32.59 
 
 
399 aa  120  3.9999999999999996e-26  Bacillus cereus B4264  Bacteria  hitchhiker  0.00382216  n/a   
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  26.57 
 
 
497 aa  120  3.9999999999999996e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_3223  cell envelope-like transcriptional attenuator  40.98 
 
 
471 aa  120  3.9999999999999996e-26  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  33.48 
 
 
419 aa  120  3.9999999999999996e-26  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_003909  BCE_0875  LytR family transcription antiterminator  31.95 
 
 
400 aa  120  4.9999999999999996e-26  Bacillus cereus ATCC 10987  Bacteria  normal  0.0676567  n/a   
 
 
-
 
NC_014248  Aazo_1762  cell envelope-like transcriptional attenuator  30.48 
 
 
501 aa  120  4.9999999999999996e-26  'Nostoc azollae' 0708  Bacteria  normal  0.103676  n/a   
 
 
-
 
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