13 homologs were found in PanDaTox collection
for query gene Shel_01150 on replicon NC_013165
Organism: Slackia heliotrinireducens DSM 20476



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013165  Shel_01150  PAS domain-containing protein  100 
 
 
524 aa  1082  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.00148391  normal 
 
 
-
 
NC_013165  Shel_12060  two component response regulator  31.39 
 
 
256 aa  73.9  6e-12  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.106419  normal 
 
 
-
 
NC_011830  Dhaf_1568  response regulator receiver and SARP domain protein  31.41 
 
 
288 aa  68.6  3e-10  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0553389  n/a   
 
 
-
 
NC_010505  Mrad2831_2578  PAS/PAC sensor signal transduction histidine kinase  25 
 
 
527 aa  50.1  0.0001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.376758  normal 
 
 
-
 
NC_007355  Mbar_A3447  hypothetical protein  23.32 
 
 
1210 aa  48.1  0.0004  Methanosarcina barkeri str. Fusaro  Archaea  hitchhiker  0.00320271  normal  0.0786508 
 
 
-
 
NC_011830  Dhaf_0495  response regulator receiver and SARP domain protein  26.03 
 
 
365 aa  47  0.0008  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  1.08458e-12  n/a   
 
 
-
 
NC_013947  Snas_0796  transcriptional regulator, SARP family  26.9 
 
 
1033 aa  45.8  0.002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.64254  normal 
 
 
-
 
NC_013947  Snas_0797  transcriptional regulator, SARP family  28.07 
 
 
1001 aa  45.1  0.003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2896  response regulator receiver and SARP domain-containing protein  26.95 
 
 
268 aa  43.9  0.006  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.264133 
 
 
-
 
NC_012918  GM21_0257  PAS/PAC sensor hybrid histidine kinase  25.83 
 
 
1108 aa  43.9  0.007  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.13837e-06 
 
 
-
 
NC_008346  Swol_0292  hypothetical protein  27.08 
 
 
954 aa  43.5  0.008  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.0090168  n/a   
 
 
-
 
NC_008609  Ppro_2089  PAS/PAC sensor hybrid histidine kinase  30.41 
 
 
802 aa  43.5  0.009  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0236176  n/a   
 
 
-
 
NC_008577  Shewana3_3419  multi-sensor hybrid histidine kinase  21.46 
 
 
1767 aa  43.5  0.009  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>