More than 300 homologs were found in PanDaTox collection
for query gene Sfum_2007 on replicon NC_008554
Organism: Syntrophobacter fumaroxidans MPOB



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008554  Sfum_2007  two component transcriptional regulator  100 
 
 
223 aa  443  1.0000000000000001e-124  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0451  DNA-binding response regulator  64.57 
 
 
224 aa  306  2.0000000000000002e-82  Geobacter sulfurreducens PCA  Bacteria  normal  0.313098  n/a   
 
 
-
 
NC_007498  Pcar_3081  two component signal transduction response regulator  64.25 
 
 
223 aa  300  1e-80  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3383  two component transcriptional regulator  63.68 
 
 
224 aa  300  1e-80  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_4293  two component transcriptional regulator  65.47 
 
 
224 aa  298  5e-80  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000934276  n/a   
 
 
-
 
NC_012918  GM21_0227  two component transcriptional regulator, winged helix family  63.68 
 
 
224 aa  293  1e-78  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_0243  two component transcriptional regulator, winged helix family  63.23 
 
 
224 aa  289  2e-77  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.000226454  n/a   
 
 
-
 
NC_007644  Moth_1478  two component transcriptional regulator  62.44 
 
 
240 aa  283  1.0000000000000001e-75  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000111909  normal 
 
 
-
 
NC_008609  Ppro_2957  two component transcriptional regulator  58.37 
 
 
223 aa  267  1e-70  Pelobacter propionicus DSM 2379  Bacteria  unclonable  0.000000000406961  n/a   
 
 
-
 
NC_013730  Slin_2929  two component transcriptional regulator, winged helix family  57.33 
 
 
230 aa  263  2e-69  Spirosoma linguale DSM 74  Bacteria  normal  0.0551332  normal 
 
 
-
 
NC_010814  Glov_0998  two component transcriptional regulator, winged helix family  58.3 
 
 
223 aa  261  6.999999999999999e-69  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  55.16 
 
 
225 aa  255  3e-67  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1658  two component transcriptional regulator  58.74 
 
 
230 aa  252  3e-66  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.450735  normal 
 
 
-
 
NC_007777  Francci3_2401  two component transcriptional regulator  55.86 
 
 
283 aa  244  9e-64  Frankia sp. CcI3  Bacteria  normal  0.0476592  normal  0.0197415 
 
 
-
 
NC_013037  Dfer_2762  two component transcriptional regulator, winged helix family  53.54 
 
 
225 aa  243  1.9999999999999999e-63  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4284  two component transcriptional regulator, winged helix family  53.36 
 
 
227 aa  238  4e-62  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011773  BCAH820_3235  DNA-binding response regulator  51.12 
 
 
224 aa  238  8e-62  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010184  BcerKBAB4_2944  two component transcriptional regulator  51.57 
 
 
224 aa  237  9e-62  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0958095  n/a   
 
 
-
 
NC_011772  BCG9842_B2033  DNA-binding response regulator  51.12 
 
 
224 aa  237  1e-61  Bacillus cereus G9842  Bacteria  normal  0.725953  normal 
 
 
-
 
NC_010571  Oter_1727  two component transcriptional regulator  52.91 
 
 
228 aa  237  1e-61  Opitutus terrae PB90-1  Bacteria  normal  0.284746  normal 
 
 
-
 
NC_007575  Suden_0317  two component transcriptional regulator  51.36 
 
 
224 aa  237  1e-61  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2619  two component transcriptional regulator, winged helix family  52.02 
 
 
224 aa  236  2e-61  Spirosoma linguale DSM 74  Bacteria  normal  0.189992  normal 
 
 
-
 
NC_013730  Slin_0732  two component transcriptional regulator, winged helix family  57.47 
 
 
231 aa  236  2e-61  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A3221  DNA-binding response regulator  50.67 
 
 
224 aa  236  2e-61  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1986  two component heavy metal response transcriptional regulator  53.39 
 
 
223 aa  235  5.0000000000000005e-61  Geobacter uraniireducens Rf4  Bacteria  normal  0.0566795  n/a   
 
 
-
 
NC_013132  Cpin_1247  two component transcriptional regulator, winged helix family  50.85 
 
 
235 aa  235  5.0000000000000005e-61  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.464606  normal 
 
 
-
 
NC_007512  Plut_1212  two component transcriptional regulator  52.25 
 
 
232 aa  234  6e-61  Chlorobium luteolum DSM 273  Bacteria  normal  0.0899901  normal  0.616229 
 
 
-
 
NC_005945  BAS2999  DNA-binding response regulator  50.22 
 
 
224 aa  234  8e-61  Bacillus anthracis str. Sterne  Bacteria  normal  0.227145  n/a   
 
 
-
 
NC_007530  GBAA_3229  DNA-binding response regulator  50.22 
 
 
224 aa  234  8e-61  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1351  two component transcriptional regulator, winged helix family  51.58 
 
 
225 aa  234  1.0000000000000001e-60  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00188361  unclonable  0.0000000206018 
 
 
-
 
CP001637  EcDH1_3058  two component heavy metal response transcriptional regulator, winged helix family  54.5 
 
 
227 aa  233  2.0000000000000002e-60  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0588  DNA-binding transcriptional activator CusR  54.5 
 
 
227 aa  233  2.0000000000000002e-60  Escherichia coli SMS-3-5  Bacteria  normal  0.372008  normal 
 
 
-
 
NC_011353  ECH74115_0651  DNA-binding transcriptional activator CusR  54.5 
 
 
227 aa  233  2.0000000000000002e-60  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.589216  normal 
 
 
-
 
NC_009800  EcHS_A0618  DNA-binding transcriptional activator CusR  54.5 
 
 
227 aa  233  2.0000000000000002e-60  Escherichia coli HS  Bacteria  hitchhiker  0.000374882  n/a   
 
 
-
 
NC_010468  EcolC_3075  DNA-binding transcriptional activator CusR  54.5 
 
 
227 aa  233  2.0000000000000002e-60  Escherichia coli ATCC 8739  Bacteria  normal  0.204173  normal 
 
 
-
 
CP001509  ECD_00532  DNA-binding response regulator in two-component regulatory system with CusS  54.5 
 
 
227 aa  233  3e-60  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00521  hypothetical protein  54.5 
 
 
227 aa  233  3e-60  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_0994  two component transcriptional regulator, winged helix family  49.77 
 
 
227 aa  232  3e-60  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.337893  n/a   
 
 
-
 
NC_009801  EcE24377A_0589  DNA-binding transcriptional activator CusR  54.5 
 
 
227 aa  233  3e-60  Escherichia coli E24377A  Bacteria  normal  0.180273  n/a   
 
 
-
 
NC_010003  Pmob_0851  two component transcriptional regulator  51.36 
 
 
222 aa  231  9e-60  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_012849  Rpic12D_5099  two component heavy metal response transcriptional regulator, winged helix family  53.15 
 
 
228 aa  230  1e-59  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0773075 
 
 
-
 
NC_007514  Cag_0440  two component transcriptional regulator  47.96 
 
 
225 aa  230  1e-59  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.747409  n/a   
 
 
-
 
NC_013037  Dfer_0274  two component transcriptional regulator, winged helix family  49.33 
 
 
232 aa  230  1e-59  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.701823  normal  0.83989 
 
 
-
 
NC_008391  Bamb_5186  two component heavy metal response transcriptional regulator  53.39 
 
 
223 aa  230  1e-59  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3349  two component heavy metal response transcriptional regulator  53.39 
 
 
223 aa  230  2e-59  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_1291  two component transcriptional regulator, winged helix family  49.77 
 
 
222 aa  230  2e-59  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4793  two component transcriptional regulator, winged helix family  51.11 
 
 
225 aa  229  3e-59  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0537  two component transcriptional regulator, winged helix family  47.53 
 
 
224 aa  228  4e-59  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0716782  n/a   
 
 
-
 
NC_010682  Rpic_1841  two component heavy metal response transcriptional regulator, winged helix family  52.7 
 
 
228 aa  228  4e-59  Ralstonia pickettii 12J  Bacteria  normal  0.99331  hitchhiker  0.00000222676 
 
 
-
 
NC_013730  Slin_2552  two component transcriptional regulator, winged helix family  50.66 
 
 
230 aa  228  5e-59  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.0000276879  normal  0.180215 
 
 
-
 
NC_009921  Franean1_3859  two component transcriptional regulator  52.04 
 
 
235 aa  228  5e-59  Frankia sp. EAN1pec  Bacteria  normal  0.0389848  normal 
 
 
-
 
NC_010515  Bcenmc03_4106  two component heavy metal response transcriptional regulator  53.85 
 
 
223 aa  228  5e-59  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.971428 
 
 
-
 
NC_010468  EcolC_3426  DNA-binding transcriptional activator CusR  53.15 
 
 
226 aa  228  7e-59  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2487  two component transcriptional regulator  50 
 
 
224 aa  228  7e-59  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.431556  normal 
 
 
-
 
NC_010070  Bmul_6295  two component heavy metal response transcriptional regulator  52.04 
 
 
223 aa  228  8e-59  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.803537  normal  0.219108 
 
 
-
 
NC_011662  Tmz1t_3985  two component heavy metal response transcriptional regulator, winged helix family  53.6 
 
 
226 aa  227  9e-59  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0453  two component transcriptional regulator, winged helix family  55.56 
 
 
225 aa  227  1e-58  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.904663  normal 
 
 
-
 
NC_010676  Bphyt_5224  two component heavy metal response transcriptional regulator, winged helix family  53.39 
 
 
225 aa  227  1e-58  Burkholderia phytofirmans PsJN  Bacteria  normal  0.57611  normal 
 
 
-
 
NC_007492  Pfl01_3855  two component heavy metal response transcriptional regulator  50.45 
 
 
226 aa  227  1e-58  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.845216 
 
 
-
 
NC_009523  RoseRS_2290  two component transcriptional regulator  50.45 
 
 
224 aa  226  1e-58  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0919  two component transcriptional regulator, winged helix family  51.12 
 
 
223 aa  226  2e-58  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.682864 
 
 
-
 
NC_009656  PSPA7_2348  putative two-component response regulator  52.25 
 
 
228 aa  226  2e-58  Pseudomonas aeruginosa PA7  Bacteria  normal  0.804247  n/a   
 
 
-
 
NC_008061  Bcen_4757  two component heavy metal response transcriptional regulator  53.39 
 
 
223 aa  226  2e-58  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0878196  n/a   
 
 
-
 
NC_008543  Bcen2424_3410  two component heavy metal response transcriptional regulator  53.39 
 
 
223 aa  226  2e-58  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3423  response regulator receiver protein  52.91 
 
 
224 aa  226  3e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.699539  normal  0.107362 
 
 
-
 
NC_008463  PA14_27810  putative two-component response regulator  51.8 
 
 
226 aa  225  3e-58  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008573  Shewana3_4296  DNA-binding transcriptional activator CusR  52.7 
 
 
226 aa  226  3e-58  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.0000252174  normal 
 
 
-
 
NC_010002  Daci_0451  two component heavy metal response transcriptional regulator  52.49 
 
 
230 aa  225  4e-58  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0258  DNA-binding transcriptional activator CusR  52.7 
 
 
226 aa  225  4e-58  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0202  two component heavy metal response transcriptional regulator  54.95 
 
 
226 aa  225  5.0000000000000005e-58  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009467  Acry_3106  two component heavy metal response transcriptional regulator  52.04 
 
 
225 aa  224  6e-58  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1780  two component heavy metal response transcriptional regulator, winged helix family  51.57 
 
 
228 aa  224  7e-58  Ralstonia pickettii 12J  Bacteria  normal  0.817023  normal  0.826624 
 
 
-
 
NC_007347  Reut_A1815  two component heavy metal response transcriptional regulator  52.04 
 
 
224 aa  224  8e-58  Ralstonia eutropha JMP134  Bacteria  normal  0.275759  n/a   
 
 
-
 
NC_014158  Tpau_3286  two component transcriptional regulator, winged helix family  51.34 
 
 
228 aa  224  8e-58  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.167791  n/a   
 
 
-
 
NC_007298  Daro_2259  two component heavy metal response transcriptional regulator  51.12 
 
 
225 aa  223  1e-57  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_5178  two component heavy metal response transcriptional regulator  51.13 
 
 
225 aa  223  1e-57  Pseudomonas putida W619  Bacteria  normal  0.341313  normal 
 
 
-
 
NC_007492  Pfl01_3624  two component heavy metal response transcriptional regulator  53.81 
 
 
224 aa  223  1e-57  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1345  response regulator receiver  48.67 
 
 
227 aa  224  1e-57  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.71904 
 
 
-
 
NC_007517  Gmet_1026  two component transcriptional regulator  47.98 
 
 
224 aa  224  1e-57  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000442073 
 
 
-
 
NC_010682  Rpic_1718  two component heavy metal response transcriptional regulator, winged helix family  52.02 
 
 
228 aa  224  1e-57  Ralstonia pickettii 12J  Bacteria  normal  0.348336  normal 
 
 
-
 
NC_012849  Rpic12D_5335  two component heavy metal response transcriptional regulator, winged helix family  52.02 
 
 
228 aa  224  1e-57  Ralstonia pickettii 12D  Bacteria  normal  0.733276  normal  0.970872 
 
 
-
 
NC_002947  PP_0047  DNA-binding heavy metal response regulator, putative  52.7 
 
 
224 aa  223  2e-57  Pseudomonas putida KT2440  Bacteria  normal  0.116112  hitchhiker  0.00000494979 
 
 
-
 
NC_009512  Pput_0061  two component heavy metal response transcriptional regulator  52.7 
 
 
224 aa  223  2e-57  Pseudomonas putida F1  Bacteria  normal  0.382659  hitchhiker  0.0034413 
 
 
-
 
NC_007005  Psyr_1127  heavy metal response regulator  49.55 
 
 
225 aa  223  2e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.294376  normal  0.216529 
 
 
-
 
NC_010501  PputW619_0064  two component heavy metal response transcriptional regulator  52.7 
 
 
224 aa  223  2e-57  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.000118539 
 
 
-
 
NC_007952  Bxe_B1389  two component heavy metal response transcriptional regulator  52.04 
 
 
225 aa  223  2e-57  Burkholderia xenovorans LB400  Bacteria  normal  0.717226  normal  0.091392 
 
 
-
 
NC_010322  PputGB1_0061  two component heavy metal response transcriptional regulator  52.7 
 
 
224 aa  223  2e-57  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0868462 
 
 
-
 
NC_010730  SYO3AOP1_0130  two component transcriptional regulator, winged helix family  50 
 
 
224 aa  223  2e-57  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00147609  n/a   
 
 
-
 
NC_010501  PputW619_0017  two component heavy metal response transcriptional regulator  50.68 
 
 
225 aa  222  3e-57  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3739  two component transcriptional regulator, winged helix family  47.35 
 
 
266 aa  222  3e-57  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.453489  normal  0.0202921 
 
 
-
 
NC_008782  Ajs_1236  two component heavy metal response transcriptional regulator  52.05 
 
 
219 aa  222  3e-57  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0019  two component heavy metal response transcriptional regulator  50.68 
 
 
225 aa  222  3e-57  Pseudomonas putida GB-1  Bacteria  normal  0.593373  normal 
 
 
-
 
NC_009512  Pput_0017  two component heavy metal response transcriptional regulator  50.68 
 
 
225 aa  222  3e-57  Pseudomonas putida F1  Bacteria  normal  normal  0.0468746 
 
 
-
 
NC_010322  PputGB1_1699  two component heavy metal response transcriptional regulator  50.9 
 
 
226 aa  222  3e-57  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.00419772 
 
 
-
 
NC_007973  Rmet_1751  two component heavy metal response transcriptional regulator  50.45 
 
 
224 aa  222  4e-57  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0784096 
 
 
-
 
NC_011313  VSAL_II0197  transcriptional activator protein, response regulator  49.55 
 
 
227 aa  222  4e-57  Aliivibrio salmonicida LFI1238  Bacteria  hitchhiker  0.0086442  n/a   
 
 
-
 
NC_013205  Aaci_2264  two component transcriptional regulator, winged helix family  50.45 
 
 
231 aa  221  4.9999999999999996e-57  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.00910741  n/a   
 
 
-
 
NC_002947  PP_5383  two component heavy metal response transcriptional regulator  50.68 
 
 
225 aa  221  4.9999999999999996e-57  Pseudomonas putida KT2440  Bacteria  normal  normal  0.651671 
 
 
-
 
NC_013521  Sked_32700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  49.55 
 
 
271 aa  221  4.9999999999999996e-57  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.442824  normal  0.485424 
 
 
-
 
NC_008148  Rxyl_0187  two component transcriptional regulator  53.67 
 
 
227 aa  221  4.9999999999999996e-57  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
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