More than 300 homologs were found in PanDaTox collection
for query gene Sfri_2305 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  100 
 
 		 220 aa  452  1.0000000000000001e-126  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  84.93 
 
 		 220 aa  394  1e-109  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  84.55 
 
 		 220 aa  394  1e-109  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  84.09 
 
 		 220 aa  393  1e-108  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  84.09 
 
 		 220 aa  393  1e-108  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  83.64 
 
 		 220 aa  392  1e-108  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  83.64 
 
 		 220 aa  391  1e-108  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  82.73 
 
 		 220 aa  387  1e-107  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  83.18 
 
 		 220 aa  389  1e-107  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  80.45 
 
 		 238 aa  377  1e-104  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  79.91 
 
 		 219 aa  374  1e-103  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  82.27 
 
 		 220 aa  369  1e-101  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  78.08 
 
 		 219 aa  364  1e-100  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  76.71 
 
 		 219 aa  357  8e-98  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  77.17 
 
 		 219 aa  357  9e-98  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  58.29 
 
 		 221 aa  247  9e-65  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  58.57 
 
 		 209 aa  225  3e-58  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  54.76 
 
 		 220 aa  224  1e-57  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  52.63 
 
 		 222 aa  221  4.9999999999999996e-57  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  55.02 
 
 		 215 aa  221  7e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  55.29 
 
 		 215 aa  221  7e-57  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  51.67 
 
 		 221 aa  219  1.9999999999999999e-56  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  56.73 
 
 		 219 aa  219  3e-56  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  54.55 
 
 		 215 aa  219  3e-56  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  50.94 
 
 		 224 aa  217  1e-55  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  54.63 
 
 		 209 aa  214  5.9999999999999996e-55  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  56.31 
 
 		 211 aa  214  9.999999999999999e-55  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  53.11 
 
 		 215 aa  212  2.9999999999999995e-54  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  52.48 
 
 		 221 aa  212  3.9999999999999995e-54  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  52.63 
 
 		 216 aa  211  1e-53  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  52.15 
 
 		 216 aa  209  2e-53  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  52.15 
 
 		 216 aa  209  2e-53  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  51.49 
 
 		 221 aa  209  2e-53  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  54.85 
 
 		 224 aa  210  2e-53  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0588074 
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  54.37 
 
 		 225 aa  210  2e-53  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_009092  Shew_2614  two component LuxR family transcriptional regulator  50 
 
 		 222 aa  209  2e-53  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  54.37 
 
 		 224 aa  209  4e-53  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal  1 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  52.15 
 
 		 216 aa  207  9e-53  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  50.94 
 
 		 217 aa  207  1e-52  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  51.17 
 
 		 216 aa  207  1e-52  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  50.94 
 
 		 217 aa  207  1e-52  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  54.95 
 
 		 223 aa  205  4e-52  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  54.15 
 
 		 209 aa  203  2e-51  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  48.8 
 
 		 224 aa  201  5e-51  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009831  Ssed_3140  two component LuxR family transcriptional regulator  49.08 
 
 		 220 aa  200  1.9999999999999998e-50  Shewanella sediminis HAW-EB3  Bacteria  normal  0.803361  normal  0.270175 
 
 
-
 
NC_007964  Nham_0273  two component LuxR family transcriptional regulator  52.11 
 
 		 231 aa  196  3e-49  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  50.48 
 
 		 214 aa  192  3e-48  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  49.76 
 
 		 215 aa  191  6e-48  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  46.92 
 
 		 210 aa  191  7e-48  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  49.07 
 
 		 213 aa  189  2.9999999999999997e-47  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  46.45 
 
 		 210 aa  189  4e-47  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  48.6 
 
 		 213 aa  188  5.999999999999999e-47  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  49.05 
 
 		 216 aa  186  3e-46  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_011989  Avi_0584  two component response regulator  50 
 
 		 215 aa  184  1.0000000000000001e-45  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  44.29 
 
 		 212 aa  183  1.0000000000000001e-45  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  44.34 
 
 		 218 aa  183  2.0000000000000003e-45  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_3420  LuxR family DNA-binding response regulator  46.54 
 
 		 216 aa  182  4.0000000000000006e-45  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  45.5 
 
 		 216 aa  181  8.000000000000001e-45  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  47.89 
 
 		 215 aa  179  2e-44  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  49.52 
 
 		 218 aa  179  2e-44  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  42.99 
 
 		 227 aa  177  1e-43  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_00712  putative regulator in two-component regulatory system ; LuxR family protein  45.02 
 
 		 214 aa  176  2e-43  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.169527  n/a   
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  43.87 
 
 		 223 aa  176  2e-43  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  43.64 
 
 		 251 aa  176  2e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_012850  Rleg_0219  two component transcriptional regulator, LuxR family  47.6 
 
 		 215 aa  176  3e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.463895 
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  42.73 
 
 		 251 aa  174  9e-43  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  45.71 
 
 		 214 aa  174  9.999999999999999e-43  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  45.71 
 
 		 214 aa  174  9.999999999999999e-43  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  42.45 
 
 		 223 aa  173  1.9999999999999998e-42  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  42.45 
 
 		 223 aa  173  1.9999999999999998e-42  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  42.45 
 
 		 223 aa  172  2.9999999999999996e-42  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  41.26 
 
 		 213 aa  172  3.9999999999999995e-42  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  42.45 
 
 		 223 aa  171  5e-42  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_011071  Smal_2061  two component transcriptional regulator, LuxR family  43.13 
 
 		 224 aa  171  5.999999999999999e-42  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.737796  normal  1 
 
 
-
 
NC_010002  Daci_2921  two component LuxR family transcriptional regulator  45.75 
 
 		 229 aa  167  9e-41  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.190475 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  41.82 
 
 		 222 aa  167  2e-40  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  46.19 
 
 		 217 aa  166  2.9999999999999998e-40  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal  1 
 
 
-
 
NC_008228  Patl_0522  two component LuxR family transcriptional regulator  44.34 
 
 		 219 aa  166  2.9999999999999998e-40  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  41.98 
 
 		 211 aa  165  5e-40  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  40.65 
 
 		 219 aa  161  6e-39  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  39.44 
 
 		 241 aa  160  1e-38  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  42.08 
 
 		 252 aa  152  5e-36  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_011757  Mchl_4590  two component transcriptional regulator, LuxR family  39.07 
 
 		 244 aa  150  1e-35  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.590508  normal  0.147521 
 
 
-
 
NC_010172  Mext_4220  response regulator receiver  39.07 
 
 		 244 aa  150  1e-35  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.89842 
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  36.32 
 
 		 218 aa  150  1e-35  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  39.35 
 
 		 221 aa  149  3e-35  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  35.98 
 
 		 219 aa  145  5e-34  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  40.99 
 
 		 224 aa  144  1e-33  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_007493  RSP_2882  two component LuxR family transcriptional regulator  41.55 
 
 		 226 aa  142  6e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.533901  n/a   
 
 
-
 
NC_009049  Rsph17029_1528  two component LuxR family transcriptional regulator  41.55 
 
 		 226 aa  141  8e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.0620794 
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  40.47 
 
 		 218 aa  141  8e-33  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_009952  Dshi_2674  two component transcriptional regulator  42.79 
 
 		 228 aa  141  9e-33  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00219271  normal  1 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  38.97 
 
 		 219 aa  139  3e-32  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  35.71 
 
 		 229 aa  139  3.9999999999999997e-32  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  41.94 
 
 		 209 aa  139  3.9999999999999997e-32  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  41.9 
 
 		 221 aa  138  7.999999999999999e-32  Pseudomonas putida F1  Bacteria  normal  0.548338  normal  1 
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  41.9 
 
 		 221 aa  137  1e-31  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  39.23 
 
 		 221 aa  136  2e-31  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  39.23 
 
 		 221 aa  136  3.0000000000000003e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  41.9 
 
 		 221 aa  136  3.0000000000000003e-31  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.892266 
 
 
-
 
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