More than 300 homologs were found in PanDaTox collection
for query gene Sden_3055 on replicon NC_007954
Organism: Shewanella denitrificans OS217



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007954  Sden_3055  response regulator receiver  100 
 
 		 219 aa  439  9.999999999999999e-123  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_1152  two component LuxR family transcriptional regulator  68 
 
 		 225 aa  294  7e-79  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_1151  two component LuxR family transcriptional regulator  67.56 
 
 		 225 aa  293  1e-78  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008322  Shewmr7_1222  two component LuxR family transcriptional regulator  67.56 
 
 		 225 aa  291  6e-78  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009665  Shew185_1285  two component LuxR family transcriptional regulator  70.14 
 
 		 216 aa  287  9e-77  Shewanella baltica OS185  Bacteria  decreased coverage  0.000337392  n/a   
 
 
-
 
NC_009052  Sbal_1241  two component LuxR family transcriptional regulator  70.14 
 
 		 216 aa  287  1e-76  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000399601  n/a   
 
 
-
 
NC_011663  Sbal223_3070  two component transcriptional regulator, LuxR family  70.14 
 
 		 216 aa  286  1e-76  Shewanella baltica OS223  Bacteria  decreased coverage  0.000689776  unclonable  0.00000000000283062 
 
 
-
 
NC_009997  Sbal195_1319  two component LuxR family transcriptional regulator  69.67 
 
 		 216 aa  284  9e-76  Shewanella baltica OS195  Bacteria  normal  0.0542522  decreased coverage  0.000972679 
 
 
-
 
NC_010717  PXO_04459  two-component system regulatory protein  52.8 
 
 		 213 aa  213  1.9999999999999998e-54  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  52.83 
 
 		 213 aa  211  7e-54  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  45.37 
 
 		 217 aa  186  2e-46  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  44.86 
 
 		 216 aa  179  2.9999999999999997e-44  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_012669  Bcav_3804  two component transcriptional regulator, LuxR family  46.73 
 
 		 216 aa  176  4e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.185264  normal  1 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  42.25 
 
 		 220 aa  172  2.9999999999999996e-42  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  43.84 
 
 		 222 aa  171  5e-42  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal  1 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  42.92 
 
 		 223 aa  171  6.999999999999999e-42  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0556432 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  44.13 
 
 		 225 aa  169  4e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.137578 
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  43.41 
 
 		 217 aa  165  5e-40  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.482316 
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  46.01 
 
 		 219 aa  164  6.9999999999999995e-40  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  41.75 
 
 		 218 aa  162  4.0000000000000004e-39  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  44.39 
 
 		 221 aa  161  9e-39  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  41.35 
 
 		 219 aa  160  1e-38  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_014210  Ndas_4366  two component transcriptional regulator, LuxR family  42.38 
 
 		 225 aa  160  2e-38  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  38.5 
 
 		 221 aa  159  3e-38  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_011884  Cyan7425_3249  two component transcriptional regulator, LuxR family  43.56 
 
 		 211 aa  159  3e-38  Cyanothece sp. PCC 7425  Bacteria  normal  0.414819  normal  0.558116 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  39.65 
 
 		 242 aa  159  4e-38  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  41.12 
 
 		 225 aa  157  8e-38  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  40.35 
 
 		 231 aa  157  1e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal  1 
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  39.72 
 
 		 215 aa  156  2e-37  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  39.19 
 
 		 236 aa  157  2e-37  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  40.09 
 
 		 229 aa  155  3e-37  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  40.19 
 
 		 225 aa  155  3e-37  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  40.19 
 
 		 215 aa  155  6e-37  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  40.19 
 
 		 215 aa  155  6e-37  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  40.19 
 
 		 215 aa  155  6e-37  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  40.19 
 
 		 215 aa  155  6e-37  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  40.79 
 
 		 239 aa  155  6e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  40.19 
 
 		 215 aa  155  6e-37  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  41.59 
 
 		 225 aa  154  7e-37  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  39.72 
 
 		 215 aa  154  9e-37  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  39.72 
 
 		 215 aa  154  9e-37  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_5788  two component transcriptional regulator, LuxR family  41.58 
 
 		 214 aa  154  1e-36  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.785726 
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  40.38 
 
 		 221 aa  154  1e-36  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  41.12 
 
 		 222 aa  154  1e-36  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  38.14 
 
 		 225 aa  154  1e-36  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  38.18 
 
 		 241 aa  153  2e-36  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_007412  Ava_C0116  two component LuxR family transcriptional regulator  39.81 
 
 		 209 aa  152  2.9999999999999998e-36  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  43.32 
 
 		 221 aa  152  2.9999999999999998e-36  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal  1 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  41.59 
 
 		 221 aa  152  2.9999999999999998e-36  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal  1 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  38.92 
 
 		 208 aa  152  4e-36  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  38.6 
 
 		 220 aa  151  5.9999999999999996e-36  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  39.62 
 
 		 220 aa  151  8e-36  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  39.25 
 
 		 215 aa  151  8e-36  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  39.22 
 
 		 239 aa  151  8e-36  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  38.01 
 
 		 234 aa  151  8.999999999999999e-36  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  40 
 
 		 227 aa  150  1e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_013595  Sros_9329  response regulator receiver protein  41.78 
 
 		 217 aa  150  1e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  39.25 
 
 		 215 aa  150  1e-35  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  36.87 
 
 		 224 aa  150  2e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  38.79 
 
 		 218 aa  150  2e-35  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  39.91 
 
 		 234 aa  149  2e-35  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal  1 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  38.53 
 
 		 226 aa  149  3e-35  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  37.5 
 
 		 213 aa  149  3e-35  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  39.71 
 
 		 213 aa  149  5e-35  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  35.43 
 
 		 226 aa  148  7e-35  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  38.79 
 
 		 224 aa  148  8e-35  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal  1 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  39.66 
 
 		 239 aa  148  8e-35  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  34.82 
 
 		 230 aa  147  9e-35  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003909  BCE_2293  LuxR family DNA-binding response regulator  36.67 
 
 		 211 aa  147  1.0000000000000001e-34  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  37.21 
 
 		 221 aa  147  1.0000000000000001e-34  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.133182 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  39.9 
 
 		 214 aa  147  1.0000000000000001e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal  1 
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  39.17 
 
 		 230 aa  147  1.0000000000000001e-34  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  0.455968 
 
 
-
 
NC_013595  Sros_4115  response regulator receiver protein  38.86 
 
 		 216 aa  146  2.0000000000000003e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.071707  normal  0.0608108 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  39.62 
 
 		 218 aa  147  2.0000000000000003e-34  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  38.65 
 
 		 212 aa  147  2.0000000000000003e-34  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  40.91 
 
 		 227 aa  146  2.0000000000000003e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  38.5 
 
 		 215 aa  146  2.0000000000000003e-34  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  38.21 
 
 		 222 aa  146  2.0000000000000003e-34  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_013124  Afer_1446  two component transcriptional regulator, LuxR family  41.71 
 
 		 223 aa  147  2.0000000000000003e-34  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  38.5 
 
 		 215 aa  147  2.0000000000000003e-34  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_014211  Ndas_4922  two component transcriptional regulator, LuxR family  34.95 
 
 		 206 aa  146  3e-34  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0302523  normal  1 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  40.29 
 
 		 209 aa  146  3e-34  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  37.44 
 
 		 225 aa  146  3e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal  1 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  39.17 
 
 		 226 aa  146  3e-34  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  39.61 
 
 		 213 aa  146  3e-34  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.624898 
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  38.81 
 
 		 230 aa  145  3e-34  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  1 
 
 
-
 
NC_013131  Caci_7658  two component transcriptional regulator, LuxR family  37.16 
 
 		 219 aa  146  3e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  38.16 
 
 		 230 aa  146  3e-34  Salinispora arenicola CNS-205  Bacteria  normal  1  hitchhiker  0.0025253 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  39.25 
 
 		 221 aa  146  3e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal  1 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  38.99 
 
 		 225 aa  145  4.0000000000000006e-34  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_014151  Cfla_0648  two component transcriptional regulator, LuxR family  38.35 
 
 		 211 aa  145  6e-34  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0377209  hitchhiker  0.00104431 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  35.38 
 
 		 222 aa  145  6e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_4433  two component transcriptional regulator, LuxR family  38.5 
 
 		 215 aa  145  7.0000000000000006e-34  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  38.5 
 
 		 220 aa  144  7.0000000000000006e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal  1 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  39.91 
 
 		 226 aa  145  7.0000000000000006e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013595  Sros_3519  response regulator receiver protein  40 
 
 		 220 aa  144  8.000000000000001e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014151  Cfla_0857  two component transcriptional regulator, LuxR family  39.53 
 
 		 219 aa  144  8.000000000000001e-34  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0762303  normal  1 
 
 
-
 
NC_013131  Caci_5202  two component transcriptional regulator, LuxR family  38.03 
 
 		 225 aa  144  8.000000000000001e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.677169  normal  0.920773 
 
 
-
 
NC_013441  Gbro_3475  response regulator receiver  36.07 
 
 		 228 aa  144  8.000000000000001e-34  Gordonia bronchialis DSM 43247  Bacteria  normal  0.849127  n/a   
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  37.23 
 
 		 234 aa  144  9e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal  1 
 
 
-
 
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