More than 300 homologs were found in PanDaTox collection
for query gene Sdel_0967 on replicon NC_013512
Organism: Sulfurospirillum deleyianum DSM 6946



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013512  Sdel_0967  histone family protein DNA-binding protein  100 
 
 
92 aa  172  9.999999999999999e-43  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_0021  DNA-binding protein HU 1 (DNA-binding protein II; HB)  72.41 
 
 
100 aa  119  1.9999999999999998e-26  Campylobacter concisus 13826  Bacteria  unclonable  0.00000160012  n/a   
 
 
-
 
NC_009714  CHAB381_0798  DNA-binding protein HU 1 (DNA-binding protein II) (HB)  60.87 
 
 
107 aa  107  7.000000000000001e-23  Campylobacter hominis ATCC BAA-381  Bacteria  unclonable  0.000000000041032  n/a   
 
 
-
 
NC_003912  CJE0991  DNA-binding protein HU  56.52 
 
 
98 aa  100  9e-21  Campylobacter jejuni RM1221  Bacteria  unclonable  0.0000336504  n/a   
 
 
-
 
NC_009707  JJD26997_0901  DNA-binding protein HU  56.52 
 
 
98 aa  100  9e-21  Campylobacter jejuni subsp. doylei 269.97  Bacteria  unclonable  0.00000000000106292  n/a   
 
 
-
 
NC_008787  CJJ81176_1731  DNA-binding protein HU  56.52 
 
 
98 aa  100  9e-21  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  unclonable  0.00000000000000434632  n/a   
 
 
-
 
NC_008599  CFF8240_0846  DNA-binding protein HU  55.43 
 
 
104 aa  95.9  2e-19  Campylobacter fetus subsp. fetus 82-40  Bacteria  hitchhiker  0.0000034735  n/a   
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  51.65 
 
 
91 aa  92  2e-18  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_1225  DNA-binding protein HU  55.29 
 
 
100 aa  90.1  1e-17  Campylobacter lari RM2100  Bacteria  hitchhiker  5.973909999999999e-20  n/a   
 
 
-
 
NC_011898  Ccel_3085  histone family protein DNA-binding protein  45.05 
 
 
91 aa  88.2  4e-17  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000115471  n/a   
 
 
-
 
NC_013205  Aaci_0186  histone family protein DNA-binding protein  48.86 
 
 
90 aa  87  8e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3008  histone family protein DNA-binding protein  44.94 
 
 
91 aa  85.1  3e-16  Geobacter sp. M21  Bacteria  n/a    normal  0.341575 
 
 
-
 
NC_010001  Cphy_0133  histone family protein DNA-binding protein  45.05 
 
 
91 aa  84.7  4e-16  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000000116647  n/a   
 
 
-
 
NC_009483  Gura_1918  histone family protein DNA-binding protein  47.19 
 
 
91 aa  84.3  4e-16  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000000897645  n/a   
 
 
-
 
NC_011661  Dtur_1514  histone family protein DNA-binding protein  48.35 
 
 
91 aa  84.3  5e-16  Dictyoglomus turgidum DSM 6724  Bacteria  decreased coverage  0.0000108882  n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  49.44 
 
 
90 aa  83.6  9e-16  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  49.44 
 
 
90 aa  83.6  9e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010814  Glov_1926  histone family protein DNA-binding protein  50.56 
 
 
92 aa  82.8  0.000000000000001  Geobacter lovleyi SZ  Bacteria  unclonable  0.0000000201993  n/a   
 
 
-
 
NC_011146  Gbem_1275  histone family protein DNA-binding protein  43.82 
 
 
91 aa  83.2  0.000000000000001  Geobacter bemidjiensis Bem  Bacteria  decreased coverage  0.0000000292942  n/a   
 
 
-
 
NC_008576  Mmc1_2903  histone family protein DNA-binding protein  49.44 
 
 
91 aa  82.4  0.000000000000002  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.00933352  normal  0.626047 
 
 
-
 
NC_011059  Paes_0293  histone family protein DNA-binding protein  43.82 
 
 
94 aa  82  0.000000000000002  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.416752  normal  0.0238993 
 
 
-
 
NC_009253  Dred_0115  histone family protein DNA-binding protein  48.35 
 
 
95 aa  82  0.000000000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  0.552761  n/a   
 
 
-
 
NC_010831  Cphamn1_0324  histone family protein DNA-binding protein  44.44 
 
 
90 aa  82.4  0.000000000000002  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.064189  normal  0.0110025 
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  46.07 
 
 
92 aa  82.4  0.000000000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_008576  Mmc1_1251  histone family protein DNA-binding protein  49.44 
 
 
91 aa  82.4  0.000000000000002  Magnetococcus sp. MC-1  Bacteria  normal  0.0902596  normal  0.20081 
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  46.07 
 
 
90 aa  80.9  0.000000000000005  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  46.07 
 
 
90 aa  80.9  0.000000000000005  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  46.07 
 
 
90 aa  80.9  0.000000000000005  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  45.05 
 
 
91 aa  80.9  0.000000000000006  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_012034  Athe_2511  histone family protein DNA-binding protein  43.82 
 
 
92 aa  80.9  0.000000000000006  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000006954  n/a   
 
 
-
 
NC_012791  Vapar_4266  histone family protein DNA-binding protein  47.19 
 
 
93 aa  80.9  0.000000000000006  Variovorax paradoxus S110  Bacteria  normal  0.598481  n/a   
 
 
-
 
NC_007644  Moth_0085  nucleoid protein Hbs  47.25 
 
 
91 aa  80.5  0.000000000000008  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0539634  normal 
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  47.19 
 
 
90 aa  80.1  0.000000000000009  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_009674  Bcer98_1233  histone family protein DNA-binding protein  48.31 
 
 
90 aa  79.7  0.00000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0133564  n/a   
 
 
-
 
NC_011772  BCG9842_B3779  DNA-binding protein HU  48.31 
 
 
90 aa  79.7  0.00000000000001  Bacillus cereus G9842  Bacteria  decreased coverage  0.000354145  normal  0.961445 
 
 
-
 
NC_003909  BCE_1637  DNA-binding protein HU  48.31 
 
 
90 aa  79.7  0.00000000000001  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00420342  n/a   
 
 
-
 
NC_011725  BCB4264_A1566  DNA-binding protein HU  48.31 
 
 
90 aa  79.7  0.00000000000001  Bacillus cereus B4264  Bacteria  normal  0.236067  n/a   
 
 
-
 
NC_005945  BAS1420  DNA-binding protein HU  48.31 
 
 
90 aa  79.7  0.00000000000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.190218  n/a   
 
 
-
 
NC_005957  BT9727_1392  DNA-binding protein HU  48.31 
 
 
90 aa  79.7  0.00000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.011833  n/a   
 
 
-
 
NC_006274  BCZK1392  DNA-binding protein HU  48.31 
 
 
90 aa  79.7  0.00000000000001  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000512711  n/a   
 
 
-
 
NC_011658  BCAH187_A1673  DNA-binding protein HU  48.31 
 
 
90 aa  79.7  0.00000000000001  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000325838  n/a   
 
 
-
 
NC_011773  BCAH820_1604  DNA-binding protein HU  48.31 
 
 
90 aa  79.7  0.00000000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000159132 
 
 
-
 
NC_007530  GBAA_1531  DNA-binding protein HU  48.31 
 
 
90 aa  79.7  0.00000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.259543  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1434  histone family protein DNA-binding protein  48.31 
 
 
90 aa  79.7  0.00000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.087278  n/a   
 
 
-
 
NC_009667  Oant_2203  histone family protein DNA-binding protein  48.31 
 
 
91 aa  79  0.00000000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0471577  n/a   
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  42.86 
 
 
91 aa  78.6  0.00000000000003  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_008261  CPF_2802  DNA-binding protein HU  43.82 
 
 
91 aa  78.6  0.00000000000003  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000000141643  n/a   
 
 
-
 
NC_008262  CPR_2488  DNA-binding protein HU  43.82 
 
 
91 aa  78.6  0.00000000000003  Clostridium perfringens SM101  Bacteria  unclonable  0.0000000000405619  n/a   
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  43.82 
 
 
91 aa  78.6  0.00000000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_0219  histone family protein DNA-binding protein  44.94 
 
 
96 aa  77.8  0.00000000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.132966  normal 
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  43.82 
 
 
91 aa  77.8  0.00000000000004  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  42.7 
 
 
90 aa  78.2  0.00000000000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_013223  Dret_1900  histone family protein DNA-binding protein  44.94 
 
 
90 aa  77.8  0.00000000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0802524 
 
 
-
 
NC_010803  Clim_0201  histone family protein DNA-binding protein  42.22 
 
 
91 aa  77.8  0.00000000000005  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.000000429798  n/a   
 
 
-
 
NC_009636  Smed_0875  histone family protein DNA-binding protein  46.07 
 
 
90 aa  77  0.00000000000008  Sinorhizobium medicae WSM419  Bacteria  normal  0.757232  normal 
 
 
-
 
NC_009505  BOV_1064  DNA-binding protein HU  47.19 
 
 
91 aa  77  0.00000000000008  Brucella ovis ATCC 25840  Bacteria  normal  0.203306  n/a   
 
 
-
 
NC_007794  Saro_1362  histone-like DNA-binding protein  47.19 
 
 
90 aa  77  0.00000000000008  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.102123  n/a   
 
 
-
 
NC_010814  Glov_2215  histone family protein DNA-binding protein  42.86 
 
 
95 aa  77  0.00000000000008  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0000076232  n/a   
 
 
-
 
NC_008639  Cpha266_0238  histone family protein DNA-binding protein  40.7 
 
 
91 aa  76.6  0.0000000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG0121  DNA-binding protein HU  44.19 
 
 
88 aa  76.6  0.0000000000001  Porphyromonas gingivalis W83  Bacteria  n/a    hitchhiker  0.00022412 
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  43.82 
 
 
90 aa  76.3  0.0000000000001  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  44.94 
 
 
90 aa  76.3  0.0000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_008527  LACR_0525  nucleoid protein Hbs  46.59 
 
 
91 aa  76.6  0.0000000000001  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.00046461  n/a   
 
 
-
 
NC_007204  Psyc_1474  putative DNA-binding protein HU-beta  41.38 
 
 
90 aa  75.9  0.0000000000002  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000000000000997119  hitchhiker  0.0000985943 
 
 
-
 
NC_007512  Plut_1957  histone-like DNA-binding protein  41.11 
 
 
91 aa  75.9  0.0000000000002  Chlorobium luteolum DSM 273  Bacteria  hitchhiker  0.000024611  normal  0.388646 
 
 
-
 
NC_007519  Dde_2752  histone-like DNA-binding protein  46.67 
 
 
91 aa  75.9  0.0000000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0070  nucleoid protein Hbs  43.82 
 
 
92 aa  75.5  0.0000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0240129  normal 
 
 
-
 
NC_012560  Avin_43920  histone-like DNA-binding protein  47.19 
 
 
90 aa  75.5  0.0000000000002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1870  histone family protein DNA-binding protein  44.94 
 
 
91 aa  75.9  0.0000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0130937 
 
 
-
 
NC_011898  Ccel_2424  histone family protein DNA-binding protein  40.45 
 
 
91 aa  75.1  0.0000000000003  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000000394497  n/a   
 
 
-
 
NC_004310  BR1105  DNA-binding protein HU  46.07 
 
 
91 aa  75.1  0.0000000000003  Brucella suis 1330  Bacteria  normal  0.965912  n/a   
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  42.7 
 
 
91 aa  75.1  0.0000000000003  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_007614  Nmul_A2337  histone-like DNA-binding protein  46.07 
 
 
90 aa  75.1  0.0000000000003  Nitrosospira multiformis ATCC 25196  Bacteria  unclonable  0.0000000498066  n/a   
 
 
-
 
NC_008254  Meso_1172  histone-like DNA-binding protein  44.94 
 
 
90 aa  75.1  0.0000000000003  Chelativorans sp. BNC1  Bacteria  normal  0.856335  n/a   
 
 
-
 
NC_013171  Apre_0964  histone family protein DNA-binding protein  41.3 
 
 
92 aa  75.1  0.0000000000003  Anaerococcus prevotii DSM 20548  Bacteria  decreased coverage  0.00000000994236  n/a   
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  41.57 
 
 
90 aa  75.1  0.0000000000003  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_002939  GSU3132  DNA-binding protein HU  45.56 
 
 
94 aa  74.7  0.0000000000004  Geobacter sulfurreducens PCA  Bacteria  normal  0.246817  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  42.7 
 
 
90 aa  74.7  0.0000000000004  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_007517  Gmet_0355  histone-like DNA-binding protein  45.56 
 
 
94 aa  74.7  0.0000000000004  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00204011  normal  0.390975 
 
 
-
 
NC_010117  COXBURSA331_A1641  DNA-binding protein HU  39.56 
 
 
94 aa  74.7  0.0000000000004  Coxiella burnetii RSA 331  Bacteria  unclonable  7.02248e-19  n/a   
 
 
-
 
NC_008048  Sala_0799  histone-like DNA-binding protein  44.94 
 
 
90 aa  74.7  0.0000000000004  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.0173855 
 
 
-
 
NC_009727  CBUD_0508  DNA-binding protein HU  39.56 
 
 
94 aa  74.7  0.0000000000004  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.000000377509  n/a   
 
 
-
 
NC_008576  Mmc1_1118  HU family DNA-binding protein  44.94 
 
 
91 aa  74.7  0.0000000000004  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00000128568  normal 
 
 
-
 
NC_013510  Tcur_3460  histone family protein DNA-binding protein  44.44 
 
 
92 aa  74.3  0.0000000000005  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0312988  n/a   
 
 
-
 
NC_007643  Rru_A1553  histone-like DNA-binding protein  46.07 
 
 
91 aa  74.3  0.0000000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  40.23 
 
 
90 aa  74.3  0.0000000000005  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_013131  Caci_8047  histone family protein DNA-binding protein  47.19 
 
 
232 aa  73.9  0.0000000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.278826  normal 
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  41.57 
 
 
90 aa  73.9  0.0000000000007  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  41.57 
 
 
90 aa  73.6  0.0000000000008  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_2069  histone family protein DNA-binding protein  43.33 
 
 
95 aa  73.2  0.000000000001  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1035  histone family protein DNA-binding protein  39.33 
 
 
90 aa  73.2  0.000000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  decreased coverage  0.00000557803  hitchhiker  0.00000000462139 
 
 
-
 
NC_009052  Sbal_0507  histone family protein DNA-binding protein  41.57 
 
 
90 aa  73.2  0.000000000001  Shewanella baltica OS155  Bacteria  normal  0.0267079  n/a   
 
 
-
 
NC_007517  Gmet_1608  histone-like DNA-binding protein  44.57 
 
 
96 aa  72.8  0.000000000001  Geobacter metallireducens GS-15  Bacteria  unclonable  5.49082e-20  normal 
 
 
-
 
NC_011365  Gdia_3327  histone family protein DNA-binding protein  44.44 
 
 
94 aa  73.2  0.000000000001  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.372094  normal  0.0697763 
 
 
-
 
NC_009665  Shew185_3817  histone family protein DNA-binding protein  41.57 
 
 
90 aa  73.2  0.000000000001  Shewanella baltica OS185  Bacteria  normal  0.531766  n/a   
 
 
-
 
NC_009997  Sbal195_3943  histone family protein DNA-binding protein  41.57 
 
 
90 aa  73.2  0.000000000001  Shewanella baltica OS195  Bacteria  normal  0.37618  normal 
 
 
-
 
NC_009438  Sputcn32_3325  histone family protein DNA-binding protein  41.57 
 
 
90 aa  73.2  0.000000000001  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_2403  histone family protein DNA-binding protein  41.57 
 
 
90 aa  73.2  0.000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.00000000237544  n/a   
 
 
-
 
NC_011663  Sbal223_3761  histone family protein DNA-binding protein  41.57 
 
 
90 aa  73.2  0.000000000001  Shewanella baltica OS223  Bacteria  normal  normal  0.768478 
 
 
-
 
NC_008576  Mmc1_0914  HU family DNA-binding protein  40.45 
 
 
91 aa  73.2  0.000000000001  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>