289 homologs were found in PanDaTox collection
for query gene Sde_3342 on replicon NC_007912
Organism: Saccharophagus degradans 2-40



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007912  Sde_3342  rRNA large subunit methyltransferase  100 
 
 
155 aa  320  5e-87  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000000127948  normal  0.0166889 
 
 
-
 
NC_009654  Mmwyl1_2849  hypothetical protein  58.71 
 
 
155 aa  206  8e-53  Marinomonas sp. MWYL1  Bacteria  normal  0.158377  hitchhiker  0.0000000861677 
 
 
-
 
NC_007492  Pfl01_4971  rRNA large subunit methyltransferase  56.13 
 
 
155 aa  192  1e-48  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.170653  normal  0.369961 
 
 
-
 
NC_009439  Pmen_3799  rRNA large subunit methyltransferase  54.84 
 
 
155 aa  188  2e-47  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0613  rRNA large subunit methyltransferase  53.55 
 
 
155 aa  186  1e-46  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4808  rRNA large subunit methyltransferase  53.55 
 
 
155 aa  186  2e-46  Pseudomonas putida KT2440  Bacteria  normal  normal  0.24458 
 
 
-
 
NC_009512  Pput_4683  rRNA large subunit methyltransferase  53.55 
 
 
155 aa  186  2e-46  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4861  rRNA large subunit methyltransferase  53.55 
 
 
155 aa  185  2e-46  Pseudomonas putida GB-1  Bacteria  normal  0.394825  normal 
 
 
-
 
NC_009656  PSPA7_1105  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  185  3e-46  Pseudomonas aeruginosa PA7  Bacteria  normal  0.909306  n/a   
 
 
-
 
NC_009783  VIBHAR_01218  rRNA large subunit methyltransferase  52.26 
 
 
156 aa  184  4e-46  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_12050  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  184  4e-46  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0613288  normal 
 
 
-
 
NC_008740  Maqu_2414  hypothetical protein  53.55 
 
 
156 aa  183  6e-46  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00000142803  n/a   
 
 
-
 
NC_004578  PSPTO_4826  hypothetical protein  52.26 
 
 
155 aa  183  7e-46  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.715352  n/a   
 
 
-
 
NC_007005  Psyr_4366  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  183  7e-46  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.712545  normal  0.959916 
 
 
-
 
NC_009436  Ent638_1171  rRNA large subunit methyltransferase  54.19 
 
 
155 aa  182  2.0000000000000003e-45  Enterobacter sp. 638  Bacteria  normal  0.195021  normal  0.132715 
 
 
-
 
NC_009457  VC0395_A0474  rRNA large subunit methyltransferase  52.26 
 
 
156 aa  179  9.000000000000001e-45  Vibrio cholerae O395  Bacteria  normal  0.0372612  n/a   
 
 
-
 
NC_009708  YpsIP31758_2948  rRNA large subunit methyltransferase  51.61 
 
 
156 aa  179  1e-44  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0113814  n/a   
 
 
-
 
NC_010159  YpAngola_A1847  rRNA large subunit methyltransferase  51.61 
 
 
156 aa  179  1e-44  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_3020  rRNA large subunit methyltransferase  51.61 
 
 
156 aa  179  1e-44  Yersinia pseudotuberculosis YPIII  Bacteria  hitchhiker  0.0000384125  n/a   
 
 
-
 
CP001509  ECD_00605  hypothetical protein  52.26 
 
 
155 aa  178  2e-44  Escherichia coli BL21(DE3)  Bacteria  hitchhiker  0.000332715  n/a   
 
 
-
 
CP001637  EcDH1_2990  protein of unknown function DUF163  52.26 
 
 
155 aa  178  2e-44  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000000000047133  n/a   
 
 
-
 
NC_002977  MCA0377  rRNA large subunit methyltransferase  50.32 
 
 
155 aa  178  2e-44  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00594  hypothetical protein  52.26 
 
 
155 aa  178  2e-44  Escherichia coli BL21  Bacteria  hitchhiker  0.000243444  n/a   
 
 
-
 
NC_010468  EcolC_3009  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  178  2e-44  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.000000239477  normal 
 
 
-
 
NC_010658  SbBS512_E0615  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  178  2e-44  Shigella boydii CDC 3083-94  Bacteria  decreased coverage  0.0000000000000121913  n/a   
 
 
-
 
NC_009800  EcHS_A0688  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  178  2e-44  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000000154252  n/a   
 
 
-
 
NC_010498  EcSMS35_0656  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  178  2e-44  Escherichia coli SMS-3-5  Bacteria  unclonable  0.000000000108281  normal 
 
 
-
 
NC_012880  Dd703_1093  rRNA large subunit methyltransferase  50.97 
 
 
156 aa  178  2e-44  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0725  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  178  2e-44  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000000708993  normal  0.106325 
 
 
-
 
NC_008340  Mlg_0406  hypothetical protein  53.55 
 
 
155 aa  178  2e-44  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.57756  normal  0.24642 
 
 
-
 
NC_009801  EcE24377A_0662  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  178  2e-44  Escherichia coli E24377A  Bacteria  hitchhiker  0.0000000000637947  n/a   
 
 
-
 
NC_011205  SeD_A0743  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  178  2.9999999999999997e-44  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  hitchhiker  0.000786877  normal 
 
 
-
 
NC_011083  SeHA_C0757  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  178  2.9999999999999997e-44  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00922876  normal 
 
 
-
 
NC_011094  SeSA_A0801  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  178  2.9999999999999997e-44  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  decreased coverage  0.000227115  normal 
 
 
-
 
NC_011080  SNSL254_A0697  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  178  2.9999999999999997e-44  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00566103  normal 
 
 
-
 
NC_009832  Spro_1202  hypothetical protein  50.97 
 
 
156 aa  178  2.9999999999999997e-44  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_3149  rRNA large subunit methyltransferase  50.32 
 
 
156 aa  178  2.9999999999999997e-44  Pectobacterium wasabiae WPP163  Bacteria  normal  0.788661  n/a   
 
 
-
 
NC_007963  Csal_1544  hypothetical protein  53.55 
 
 
155 aa  178  2.9999999999999997e-44  Chromohalobacter salexigens DSM 3043  Bacteria  decreased coverage  0.00441553  n/a   
 
 
-
 
NC_011149  SeAg_B0683  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  178  2.9999999999999997e-44  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  decreased coverage  0.00000000000302367  n/a   
 
 
-
 
NC_012917  PC1_1182  rRNA large subunit methyltransferase  50.32 
 
 
156 aa  178  2.9999999999999997e-44  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.159956  n/a   
 
 
-
 
NC_008709  Ping_1136  rRNA large subunit methyltransferase  49.68 
 
 
156 aa  177  2.9999999999999997e-44  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.00404994  normal  0.955793 
 
 
-
 
NC_012912  Dd1591_2963  rRNA large subunit methyltransferase  50.32 
 
 
156 aa  177  4e-44  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0986  rRNA large subunit methyltransferase  49.68 
 
 
156 aa  177  4.999999999999999e-44  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1716  rRNA large subunit methyltransferase  48.39 
 
 
156 aa  177  7e-44  Colwellia psychrerythraea 34H  Bacteria  normal  0.962175  n/a   
 
 
-
 
NC_009092  Shew_2934  rRNA large subunit methyltransferase  50.32 
 
 
156 aa  176  9e-44  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000000178909  decreased coverage  0.00747753 
 
 
-
 
NC_007954  Sden_0856  rRNA large subunit methyltransferase  49.68 
 
 
156 aa  176  1e-43  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000000031317  n/a   
 
 
-
 
NC_009831  Ssed_3484  rRNA large subunit methyltransferase  50.32 
 
 
156 aa  175  2e-43  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000336055  unclonable  0.0000000000393257 
 
 
-
 
NC_008228  Patl_1561  rRNA large subunit methyltransferase  47.74 
 
 
156 aa  174  3e-43  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0322  rRNA large subunit methyltransferase  50.97 
 
 
155 aa  175  3e-43  Haemophilus somnus 129PT  Bacteria  normal  0.072258  n/a   
 
 
-
 
NC_010506  Swoo_3707  rRNA large subunit methyltransferase  49.68 
 
 
156 aa  174  5e-43  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000116859  decreased coverage  0.000000222893 
 
 
-
 
NC_011901  Tgr7_2273  SPOUT methyltransferase superfamily protein  52.26 
 
 
156 aa  172  9.999999999999999e-43  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.246773  n/a   
 
 
-
 
NC_011138  MADE_01658  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  172  9.999999999999999e-43  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.000106355  n/a   
 
 
-
 
NC_011663  Sbal223_1093  rRNA large subunit methyltransferase  49.03 
 
 
156 aa  172  1.9999999999999998e-42  Shewanella baltica OS223  Bacteria  unclonable  0.000000000256643  hitchhiker  0.000000000516486 
 
 
-
 
NC_009997  Sbal195_3452  rRNA large subunit methyltransferase  49.03 
 
 
156 aa  172  1.9999999999999998e-42  Shewanella baltica OS195  Bacteria  hitchhiker  0.0000535521  hitchhiker  0.00271543 
 
 
-
 
NC_009665  Shew185_3316  rRNA large subunit methyltransferase  49.03 
 
 
156 aa  172  1.9999999999999998e-42  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000308815  n/a   
 
 
-
 
NC_008345  Sfri_0700  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  172  1.9999999999999998e-42  Shewanella frigidimarina NCIMB 400  Bacteria  decreased coverage  0.00000000637083  n/a   
 
 
-
 
NC_009052  Sbal_3274  rRNA large subunit methyltransferase  49.03 
 
 
156 aa  172  1.9999999999999998e-42  Shewanella baltica OS155  Bacteria  unclonable  0.000000000453128  n/a   
 
 
-
 
NC_008700  Sama_2587  rRNA large subunit methyltransferase  49.68 
 
 
156 aa  172  1.9999999999999998e-42  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00000227435  normal  0.158924 
 
 
-
 
NC_009901  Spea_3148  rRNA large subunit methyltransferase  48.39 
 
 
156 aa  170  6.999999999999999e-42  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.000000000132782  n/a   
 
 
-
 
NC_009438  Sputcn32_2868  rRNA large subunit methyltransferase  47.74 
 
 
156 aa  169  9e-42  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000163704  n/a   
 
 
-
 
NC_004347  SO_1169  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  168  2e-41  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007520  Tcr_0486  hypothetical protein  54.17 
 
 
145 aa  168  2e-41  Thiomicrospira crunogena XCL-2  Bacteria  decreased coverage  0.0000000000000178654  n/a   
 
 
-
 
NC_008322  Shewmr7_1057  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  168  2e-41  Shewanella sp. MR-7  Bacteria  hitchhiker  0.0000490967  hitchhiker  0.00601071 
 
 
-
 
NC_008321  Shewmr4_0992  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  168  3e-41  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000000354968  normal  0.0933085 
 
 
-
 
NC_008577  Shewana3_0996  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  168  3e-41  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000270066  normal  0.150944 
 
 
-
 
NC_012560  Avin_08380  rRNA large subunit methyltransferase  53.55 
 
 
155 aa  163  6.9999999999999995e-40  Azotobacter vinelandii DJ  Bacteria  normal  0.0699075  n/a   
 
 
-
 
NC_013456  VEA_004221  hypothetical protein  48.61 
 
 
145 aa  162  1.0000000000000001e-39  Vibrio sp. Ex25  Bacteria  hitchhiker  0.000988168  n/a   
 
 
-
 
NC_013889  TK90_2126  protein of unknown function DUF163  50.32 
 
 
156 aa  160  7e-39  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.933959  normal  0.0354668 
 
 
-
 
NC_006368  lpp1331  rRNA large subunit methyltransferase  48.39 
 
 
156 aa  160  8.000000000000001e-39  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1327  rRNA large subunit methyltransferase  48.39 
 
 
156 aa  159  1e-38  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009727  CBUD_1512  rRNA large subunit methyltransferase  44.52 
 
 
155 aa  159  1e-38  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.0000386318  n/a   
 
 
-
 
NC_010622  Bphy_2069  rRNA large subunit methyltransferase  50.32 
 
 
156 aa  157  5e-38  Burkholderia phymatum STM815  Bacteria  normal  0.608211  normal  0.214177 
 
 
-
 
NC_007484  Noc_2659  hypothetical protein  49.03 
 
 
157 aa  156  1e-37  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0267321  n/a   
 
 
-
 
NC_007651  BTH_I1010  rRNA large subunit methyltransferase  47.74 
 
 
156 aa  154  3e-37  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0979  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  154  6e-37  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0495213  normal 
 
 
-
 
NC_007951  Bxe_A3264  rRNA large subunit methyltransferase  49.68 
 
 
156 aa  154  6e-37  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A5626  rRNA large subunit methyltransferase  46.45 
 
 
156 aa  153  1e-36  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2216  rRNA large subunit methyltransferase  46.45 
 
 
156 aa  152  2e-36  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_2337  rRNA large subunit methyltransferase  46.45 
 
 
156 aa  151  2e-36  Burkholderia ambifaria AMMD  Bacteria  normal  0.390809  n/a   
 
 
-
 
NC_006348  BMA1889  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  151  2.9999999999999998e-36  Burkholderia mallei ATCC 23344  Bacteria  normal  0.841126  n/a   
 
 
-
 
NC_007434  BURPS1710b_1379  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  151  2.9999999999999998e-36  Burkholderia pseudomallei 1710b  Bacteria  normal  0.588338  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1070  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  151  2.9999999999999998e-36  Burkholderia mallei SAVP1  Bacteria  normal  0.503879  n/a   
 
 
-
 
NC_008836  BMA10229_A0797  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  151  2.9999999999999998e-36  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0353  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  151  2.9999999999999998e-36  Burkholderia mallei NCTC 10247  Bacteria  normal  0.389517  n/a   
 
 
-
 
NC_009076  BURPS1106A_1235  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  151  2.9999999999999998e-36  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1687  rRNA large subunit methyltransferase  46.45 
 
 
156 aa  151  2.9999999999999998e-36  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_2322  rRNA large subunit methyltransferase  46.45 
 
 
156 aa  151  2.9999999999999998e-36  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.810756  normal  0.749932 
 
 
-
 
NC_008542  Bcen2424_2299  rRNA large subunit methyltransferase  46.45 
 
 
156 aa  151  2.9999999999999998e-36  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1226  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  151  2.9999999999999998e-36  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1296  rRNA large subunit methyltransferase  48.39 
 
 
156 aa  151  4e-36  Burkholderia phytofirmans PsJN  Bacteria  normal  0.433807  normal  0.073248 
 
 
-
 
NC_011071  Smal_2907  rRNA large subunit methyltransferase  47.1 
 
 
156 aa  148  2e-35  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0780  rRNA large subunit methyltransferase  46.2 
 
 
159 aa  148  2e-35  Cupriavidus metallidurans CH34  Bacteria  normal  0.329962  normal  0.230436 
 
 
-
 
NC_012856  Rpic12D_1993  rRNA large subunit methyltransferase  46.45 
 
 
156 aa  148  3e-35  Ralstonia pickettii 12D  Bacteria  normal  0.350093  normal  0.83098 
 
 
-
 
NC_007948  Bpro_1973  rRNA large subunit methyltransferase  47.74 
 
 
155 aa  148  3e-35  Polaromonas sp. JS666  Bacteria  normal  normal  0.597244 
 
 
-
 
NC_010717  PXO_01881  rRNA large subunit methyltransferase  45.81 
 
 
156 aa  147  4e-35  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0790169  n/a   
 
 
-
 
NC_007969  Pcryo_0433  rRNA large subunit methyltransferase  48.12 
 
 
166 aa  147  6e-35  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1738  protein of unknown function DUF163  47.74 
 
 
156 aa  146  9e-35  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_3199  rRNA large subunit methyltransferase  47.1 
 
 
155 aa  146  1.0000000000000001e-34  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0492492  normal 
 
 
-
 
NC_010682  Rpic_2393  rRNA large subunit methyltransferase  45.81 
 
 
156 aa  145  1.0000000000000001e-34  Ralstonia pickettii 12J  Bacteria  normal  0.147472  normal 
 
 
-
 
NC_010513  Xfasm12_1884  rRNA large subunit methyltransferase  46.45 
 
 
157 aa  145  1.0000000000000001e-34  Xylella fastidiosa M12  Bacteria  normal  0.616736  n/a   
 
 
-
 
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