18 homologs were found in PanDaTox collection
for query gene Sde_0093 on replicon NC_007912
Organism: Saccharophagus degradans 2-40



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007912  Sde_0093  hypothetical protein  100 
 
 
122 aa  250  5.000000000000001e-66  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_0110  transcriptional regulator, XRE family  43.97 
 
 
115 aa  84.3  5e-16  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_2265  helix-turn-helix domain-containing protein  43.1 
 
 
115 aa  81.6  0.000000000000003  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0339  transcriptional regulator, XRE family  44.33 
 
 
115 aa  76.3  0.0000000000001  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.852602 
 
 
-
 
NC_003910  CPS_2665  DNA-binding protein  35.92 
 
 
120 aa  68.9  0.00000000002  Colwellia psychrerythraea 34H  Bacteria  normal  0.292881  n/a   
 
 
-
 
NC_009943  Dole_2636  XRE family transcriptional regulator  40.59 
 
 
121 aa  68.2  0.00000000004  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.0000270139  n/a   
 
 
-
 
NC_008255  CHU_3780  XRE family transcriptional regulator  35.14 
 
 
122 aa  65.9  0.0000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0625  XRE family transcriptional regulator  37.76 
 
 
108 aa  65.9  0.0000000002  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.000000000512612 
 
 
-
 
NC_011901  Tgr7_0613  putative transcriptional regulator, XRE family  39.78 
 
 
123 aa  63.2  0.000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0102  XRE family transcriptional regulator  35.24 
 
 
115 aa  61.6  0.000000004  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.0467204  n/a   
 
 
-
 
NC_011059  Paes_1468  transcriptional regulator, XRE family  34.29 
 
 
125 aa  54.7  0.0000004  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000041852  normal 
 
 
-
 
NC_007512  Plut_1316  XRE family transcriptional regulator  32 
 
 
113 aa  52.8  0.000002  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2159  hypothetical protein  37.35 
 
 
198 aa  52.4  0.000002  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_2228  transcriptional regulator, XRE family  32.94 
 
 
109 aa  47  0.00008  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0895  XRE family transcriptional regulator  33.64 
 
 
104 aa  43.5  0.0009  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0752  transcriptional regulator, XRE family  35.14 
 
 
102 aa  42.4  0.002  Jonesia denitrificans DSM 20603  Bacteria  normal  0.596173  normal 
 
 
-
 
NC_008009  Acid345_2427  XRE family transcriptional regulator  34.21 
 
 
107 aa  42  0.003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.716989 
 
 
-
 
NC_010815  Glov_3689  transcriptional regulator, XRE family  34.62 
 
 
117 aa  40.8  0.006  Geobacter lovleyi SZ  Bacteria  normal  0.18369  normal 
 
 
-
 
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