183 homologs were found in PanDaTox collection
for query gene SbBS512_E2702 on replicon NC_010658
Organism: Shigella boydii CDC 3083-94



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_02249  hypothetical protein  99.4 
 
 
668 aa  1381    Escherichia coli BL21(DE3)  Bacteria  normal  0.425785  n/a   
 
 
-
 
CP001637  EcDH1_1332  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  99.7 
 
 
668 aa  1384    Escherichia coli DH1  Bacteria  normal  0.602375  n/a   
 
 
-
 
NC_009832  Spro_3369  5-methylaminomethyl-2-thiouridine methyltransferase  62.85 
 
 
673 aa  853    Serratia proteamaculans 568  Bacteria  decreased coverage  0.00235092  normal 
 
 
-
 
NC_011094  SeSA_A2608  5-methylaminomethyl-2-thiouridine methyltransferase  79.43 
 
 
666 aa  1090    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2806  5-methylaminomethyl-2-thiouridine methyltransferase  61.46 
 
 
675 aa  847    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.641074  n/a   
 
 
-
 
NC_009708  YpsIP31758_1410  5-methylaminomethyl-2-thiouridine methyltransferase  60.44 
 
 
689 aa  835    Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000203784  n/a   
 
 
-
 
NC_009800  EcHS_A2475  5-methylaminomethyl-2-thiouridine methyltransferase  99.4 
 
 
668 aa  1380    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1519  5-methylaminomethyl-2-thiouridine methyltransferase  60.44 
 
 
689 aa  834    Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0252518  n/a   
 
 
-
 
NC_011080  SNSL254_A2568  5-methylaminomethyl-2-thiouridine methyltransferase  79.58 
 
 
666 aa  1092    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.580805  normal 
 
 
-
 
NC_009783  VIBHAR_03106  5-methylaminomethyl-2-thiouridine methyltransferase  52.54 
 
 
672 aa  711    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010658  SbBS512_E2702  5-methylaminomethyl-2-thiouridine methyltransferase  100 
 
 
668 aa  1389    Shigella boydii CDC 3083-94  Bacteria  normal  0.673186  n/a   
 
 
-
 
NC_012892  B21_02209  hypothetical protein  99.4 
 
 
668 aa  1381    Escherichia coli BL21  Bacteria  normal  0.334228  n/a   
 
 
-
 
NC_012912  Dd1591_1358  5-methylaminomethyl-2-thiouridine methyltransferase  60.72 
 
 
672 aa  811    Dickeya zeae Ech1591  Bacteria  normal  0.0608182  n/a   
 
 
-
 
NC_012880  Dd703_2586  5-methylaminomethyl-2-thiouridine methyltransferase  61.64 
 
 
675 aa  825    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1070  5-methylaminomethyl-2-thiouridine methyltransferase  51.8 
 
 
680 aa  697    Aliivibrio salmonicida LFI1238  Bacteria  normal  0.388206  n/a   
 
 
-
 
NC_010159  YpAngola_A0372  5-methylaminomethyl-2-thiouridine methyltransferase  60.44 
 
 
689 aa  834    Yersinia pestis Angola  Bacteria  hitchhiker  0.000353518  normal 
 
 
-
 
NC_011353  ECH74115_3465  5-methylaminomethyl-2-thiouridine methyltransferase  96.71 
 
 
668 aa  1332    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2732  5-methylaminomethyl-2-thiouridine methyltransferase  79.73 
 
 
666 aa  1092    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002869  5-methylaminomethyl-2-thiouridine-forming enzyme MnmC  53.59 
 
 
672 aa  717    Vibrio sp. Ex25  Bacteria  hitchhiker  0.00103068  n/a   
 
 
-
 
NC_011149  SeAg_B2519  5-methylaminomethyl-2-thiouridine methyltransferase  79.88 
 
 
666 aa  1097    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1458  5-methylaminomethyl-2-thiouridine methyltransferase  61.46 
 
 
675 aa  843    Pectobacterium wasabiae WPP163  Bacteria  normal  0.622829  n/a   
 
 
-
 
NC_010468  EcolC_1328  5-methylaminomethyl-2-thiouridine methyltransferase  99.4 
 
 
668 aa  1380    Escherichia coli ATCC 8739  Bacteria  normal  0.831924  normal 
 
 
-
 
NC_010498  EcSMS35_2481  5-methylaminomethyl-2-thiouridine methyltransferase  96.11 
 
 
668 aa  1322    Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2621  5-methylaminomethyl-2-thiouridine methyltransferase  79.58 
 
 
666 aa  1089    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.00000350397 
 
 
-
 
NC_009436  Ent638_2872  5-methylaminomethyl-2-thiouridine methyltransferase  76.13 
 
 
666 aa  1046    Enterobacter sp. 638  Bacteria  normal  0.715577  normal  0.0703666 
 
 
-
 
NC_009457  VC0395_A1694  5-methylaminomethyl-2-thiouridine methyltransferase  52.85 
 
 
674 aa  697    Vibrio cholerae O395  Bacteria  hitchhiker  0.00252388  n/a   
 
 
-
 
NC_009801  EcE24377A_2619  5-methylaminomethyl-2-thiouridine methyltransferase  95.81 
 
 
668 aa  1317    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0664  5-methylaminomethyl-2-thiouridine methyltransferase  42.84 
 
 
676 aa  563  1.0000000000000001e-159  Haemophilus somnus 129PT  Bacteria  normal  0.0436264  n/a   
 
 
-
 
NC_008709  Ping_1996  fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  41.16 
 
 
690 aa  551  1e-155  Psychromonas ingrahamii 37  Bacteria  normal  0.155036  normal  0.387333 
 
 
-
 
NC_009439  Pmen_3230  5-methylaminomethyl-2-thiouridine methyltransferase  41.42 
 
 
657 aa  461  9.999999999999999e-129  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_3384  hypothetical protein  38.5 
 
 
705 aa  453  1.0000000000000001e-126  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1343  5-methylaminomethyl-2-thiouridine methyltransferase  40.15 
 
 
654 aa  449  1e-125  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_34940  5-methylaminomethyl-2-thiouridine methyltransferase  41.74 
 
 
653 aa  452  1e-125  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1639  oxidoreductase, FAD-binding protein  39.67 
 
 
660 aa  447  1.0000000000000001e-124  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.562541  n/a   
 
 
-
 
NC_002947  PP_1751  5-methylaminomethyl-2-thiouridine methyltransferase  40.78 
 
 
654 aa  445  1e-123  Pseudomonas putida KT2440  Bacteria  normal  0.266449  normal 
 
 
-
 
NC_009512  Pput_3963  5-methylaminomethyl-2-thiouridine methyltransferase  40.78 
 
 
654 aa  445  1e-123  Pseudomonas putida F1  Bacteria  normal  0.94523  normal  0.0279642 
 
 
-
 
NC_007005  Psyr_3742  5-methylaminomethyl-2-thiouridine methyltransferase  39.35 
 
 
665 aa  434  1e-120  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  decreased coverage  0.0063824 
 
 
-
 
NC_007492  Pfl01_4098  5-methylaminomethyl-2-thiouridine methyltransferase  39.46 
 
 
659 aa  426  1e-118  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_19400  5-methylaminomethyl-2-thiouridine methyltransferase  40.78 
 
 
654 aa  423  1e-117  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0825831  normal 
 
 
-
 
NC_009656  PSPA7_1671  5-methylaminomethyl-2-thiouridine methyltransferase  40.93 
 
 
654 aa  418  9.999999999999999e-116  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_010501  PputW619_1359  5-methylaminomethyl-2-thiouridine methyltransferase  38.12 
 
 
657 aa  410  1e-113  Pseudomonas putida W619  Bacteria  normal  0.490609  normal  0.307096 
 
 
-
 
NC_003910  CPS_3808  hypothetical protein  35.29 
 
 
682 aa  407  1.0000000000000001e-112  Colwellia psychrerythraea 34H  Bacteria  normal  0.424966  n/a   
 
 
-
 
NC_007963  Csal_0704  hypothetical protein  38.62 
 
 
699 aa  405  1e-111  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01191  fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  34.55 
 
 
741 aa  386  1e-106  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1390  hypothetical protein  37.23 
 
 
622 aa  381  1e-104  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.909333 
 
 
-
 
NC_006368  lpp1489  hypothetical protein  33.38 
 
 
666 aa  374  1e-102  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010682  Rpic_1871  5-methylaminomethyl-2-thiouridine methyltransferase  36.54 
 
 
672 aa  371  1e-101  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0302238 
 
 
-
 
NC_006369  lpl1494  hypothetical protein  33.38 
 
 
666 aa  368  1e-100  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011901  Tgr7_1861  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  37.87 
 
 
661 aa  369  1e-100  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2155  glycine/D-amino acid oxidase (deaminating)-like protein  41.49 
 
 
604 aa  364  2e-99  Shewanella amazonensis SB2B  Bacteria  normal  0.195632  normal 
 
 
-
 
NC_007298  Daro_2850  5-methylaminomethyl-2-thiouridine methyltransferase  37.54 
 
 
644 aa  363  4e-99  Dechloromonas aromatica RCB  Bacteria  normal  0.413253  normal  0.437245 
 
 
-
 
NC_008321  Shewmr4_1421  FAD dependent oxidoreductase  34.61 
 
 
642 aa  357  2.9999999999999997e-97  Shewanella sp. MR-4  Bacteria  normal  0.0305521  normal 
 
 
-
 
NC_008577  Shewana3_1474  FAD dependent oxidoreductase  34.64 
 
 
640 aa  356  6.999999999999999e-97  Shewanella sp. ANA-3  Bacteria  normal  0.123359  normal  0.492 
 
 
-
 
NC_003295  RSc1709  5-methylaminomethyl-2-thiouridine methyltransferase  35.87 
 
 
657 aa  355  2e-96  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0318232 
 
 
-
 
NC_008322  Shewmr7_1486  FAD dependent oxidoreductase  34.76 
 
 
646 aa  354  2.9999999999999997e-96  Shewanella sp. MR-7  Bacteria  normal  0.193166  normal 
 
 
-
 
NC_012856  Rpic12D_1538  5-methylaminomethyl-2-thiouridine methyltransferase  35.93 
 
 
672 aa  353  4e-96  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0998844 
 
 
-
 
NC_009438  Sputcn32_2446  FAD dependent oxidoreductase  34.78 
 
 
680 aa  353  8e-96  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000288925  n/a   
 
 
-
 
NC_009665  Shew185_2764  FAD dependent oxidoreductase  34.96 
 
 
685 aa  350  5e-95  Shewanella baltica OS185  Bacteria  hitchhiker  0.00507569  n/a   
 
 
-
 
NC_009654  Mmwyl1_3401  hypothetical protein  33.43 
 
 
674 aa  349  1e-94  Marinomonas sp. MWYL1  Bacteria  normal  0.473665  normal 
 
 
-
 
NC_004347  SO_3073  hypothetical protein  33.63 
 
 
643 aa  348  2e-94  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007347  Reut_A1378  5-methylaminomethyl-2-thiouridine methyltransferase  34.86 
 
 
668 aa  343  4e-93  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1956  5-methylaminomethyl-2-thiouridine methyltransferase  37.29 
 
 
644 aa  343  5e-93  Thauera sp. MZ1T  Bacteria  normal  0.243551  n/a   
 
 
-
 
NC_009052  Sbal_2747  FAD dependent oxidoreductase  33.68 
 
 
713 aa  342  2e-92  Shewanella baltica OS155  Bacteria  hitchhiker  0.00546324  n/a   
 
 
-
 
NC_011663  Sbal223_1612  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  33.83 
 
 
708 aa  342  2e-92  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000812918  normal 
 
 
-
 
NC_009997  Sbal195_2841  FAD dependent oxidoreductase  33.78 
 
 
708 aa  339  9.999999999999999e-92  Shewanella baltica OS195  Bacteria  unclonable  0.0000153917  decreased coverage  0.000123138 
 
 
-
 
NC_007951  Bxe_A4505  5-methylaminomethyl-2-thiouridine methyltransferase  33.83 
 
 
656 aa  328  2.0000000000000001e-88  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1887  5-methylaminomethyl-2-thiouridine methyltransferase  34.36 
 
 
672 aa  328  2.0000000000000001e-88  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1481  FAD dependent oxidoreductase  33.11 
 
 
754 aa  326  8.000000000000001e-88  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00000425578  n/a   
 
 
-
 
NC_008345  Sfri_1390  FAD dependent oxidoreductase  33.95 
 
 
697 aa  323  5e-87  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3932  5-methylaminomethyl-2-thiouridine methyltransferase  33.63 
 
 
656 aa  320  3.9999999999999996e-86  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_3066  5-methylaminomethyl-2-thiouridine methyltransferase  34.46 
 
 
655 aa  318  2e-85  Burkholderia phymatum STM815  Bacteria  normal  normal  0.16811 
 
 
-
 
NC_009092  Shew_2411  FAD dependent oxidoreductase  34.85 
 
 
686 aa  318  3e-85  Shewanella loihica PV-4  Bacteria  normal  0.82841  normal 
 
 
-
 
NC_008740  Maqu_1170  hypothetical protein  33.53 
 
 
631 aa  317  5e-85  Marinobacter aquaeolei VT8  Bacteria  normal  0.285143  n/a   
 
 
-
 
NC_008576  Mmc1_2377  hypothetical protein  34.37 
 
 
667 aa  313  9e-84  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.954774 
 
 
-
 
NC_009901  Spea_1605  FAD dependent oxidoreductase  33.92 
 
 
641 aa  312  1e-83  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00154209  n/a   
 
 
-
 
NC_007969  Pcryo_1977  hypothetical protein  32.34 
 
 
697 aa  311  2e-83  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0130  hypothetical protein  32.95 
 
 
674 aa  309  1.0000000000000001e-82  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.000346728  n/a   
 
 
-
 
NC_007204  Psyc_1701  hypothetical protein  31.66 
 
 
696 aa  301  2e-80  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1927  hypothetical protein  33.23 
 
 
617 aa  298  2e-79  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.224364  n/a   
 
 
-
 
NC_010506  Swoo_3009  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  32.14 
 
 
696 aa  293  8e-78  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1471  hypothetical protein  34.03 
 
 
707 aa  290  6e-77  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0003  5-methylaminomethyl-2-thiouridine methyltransferase  33.73 
 
 
657 aa  284  5.000000000000001e-75  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0743  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  32.14 
 
 
668 aa  280  7e-74  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1643  FAD dependent oxidoreductase  30.07 
 
 
712 aa  278  2e-73  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.0028636  normal 
 
 
-
 
NC_008785  BMASAVP1_A3396  5-methylaminomethyl-2-thiouridine methyltransferase  33.88 
 
 
708 aa  278  3e-73  Burkholderia mallei SAVP1  Bacteria  normal  0.145892  n/a   
 
 
-
 
NC_006348  BMA2914  5-methylaminomethyl-2-thiouridine methyltransferase  33.73 
 
 
660 aa  276  6e-73  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0217  5-methylaminomethyl-2-thiouridine methyltransferase  33.73 
 
 
660 aa  276  6e-73  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0003  5-methylaminomethyl-2-thiouridine methyltransferase  34.13 
 
 
708 aa  276  7e-73  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1628  5-methylaminomethyl-2-thiouridine methyltransferase  33.73 
 
 
711 aa  276  8e-73  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0003  5-methylaminomethyl-2-thiouridine methyltransferase  33.73 
 
 
711 aa  276  8e-73  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2973  5-methylaminomethyl-2-thiouridine methyltransferase  33.73 
 
 
711 aa  276  8e-73  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_0457  5-methylaminomethyl-2-thiouridine methyltransferase  30.38 
 
 
613 aa  276  1.0000000000000001e-72  Campylobacter jejuni subsp. doylei 269.97  Bacteria  unclonable  0.000000000895922  n/a   
 
 
-
 
NC_007404  Tbd_1641  5-methylaminomethyl-2-thiouridine methyltransferase  33.79 
 
 
616 aa  274  3e-72  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.168869  normal 
 
 
-
 
NC_009524  PsycPRwf_1989  hypothetical protein  29.63 
 
 
739 aa  273  8.000000000000001e-72  Psychrobacter sp. PRwf-1  Bacteria  normal  decreased coverage  0.000136918 
 
 
-
 
NC_010084  Bmul_0067  5-methylaminomethyl-2-thiouridine methyltransferase  30.77 
 
 
657 aa  273  9e-72  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_003912  CJE1404  5-methylaminomethyl-2-thiouridine methyltransferase  30.16 
 
 
613 aa  273  1e-71  Campylobacter jejuni RM1221  Bacteria  normal  0.628111  n/a   
 
 
-
 
NC_008787  CJJ81176_1284  5-methylaminomethyl-2-thiouridine methyltransferase  30.09 
 
 
613 aa  270  8.999999999999999e-71  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  hitchhiker  0.000566158  n/a   
 
 
-
 
NC_008825  Mpe_A1964  hypothetical protein  32.11 
 
 
653 aa  252  2e-65  Methylibium petroleiphilum PM1  Bacteria  normal  0.117707  normal 
 
 
-
 
NC_009802  CCC13826_0496  5-methylaminomethyl-2-thiouridine methyltransferase  28.14 
 
 
621 aa  240  5.999999999999999e-62  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_1208  5-methylaminomethyl-2-thiouridine methyltransferase  28.1 
 
 
612 aa  239  1e-61  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.308297  n/a   
 
 
-
 
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