More than 300 homologs were found in PanDaTox collection
for query gene Saro_0490 on replicon NC_007794
Organism: Novosphingobium aromaticivorans DSM 12444



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007794  Saro_0490  CRP/FNR family transcriptional regulator  100 
 
 
256 aa  514  1.0000000000000001e-145  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  43.1 
 
 
250 aa  198  9e-50  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_012850  Rleg_1153  transcriptional regulator, Crp/Fnr family  41.42 
 
 
250 aa  193  2e-48  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2400  CRP/FNR family transcriptional regulator  42.68 
 
 
250 aa  193  2e-48  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0375093 
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  46.36 
 
 
257 aa  185  6e-46  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  41.23 
 
 
263 aa  179  4.999999999999999e-44  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  42.11 
 
 
242 aa  176  2e-43  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  43.61 
 
 
262 aa  177  2e-43  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  41.67 
 
 
249 aa  176  3e-43  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2934  cyclic nucleotide-binding protein  46.15 
 
 
249 aa  174  9.999999999999999e-43  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1275  Crp/Fnr family transcriptional regulator  45.67 
 
 
249 aa  173  1.9999999999999998e-42  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  44 
 
 
230 aa  166  2.9999999999999998e-40  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  40.49 
 
 
276 aa  155  6e-37  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_007802  Jann_3568  cyclic nucleotide-binding domain-containing protein  38.49 
 
 
242 aa  154  2e-36  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  38.34 
 
 
241 aa  149  6e-35  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  41.27 
 
 
256 aa  139  3.9999999999999997e-32  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.858211 
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  41.86 
 
 
246 aa  126  4.0000000000000003e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  39.79 
 
 
247 aa  121  9.999999999999999e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  40.24 
 
 
246 aa  117  1.9999999999999998e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  36.7 
 
 
257 aa  109  3e-23  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00106309 
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  32.16 
 
 
259 aa  110  3e-23  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.996332 
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  32.16 
 
 
259 aa  110  3e-23  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.161686 
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  35.39 
 
 
225 aa  109  5e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0893417 
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  33.33 
 
 
259 aa  107  2e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00010652 
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  34.92 
 
 
247 aa  107  2e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  34.18 
 
 
243 aa  105  9e-22  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  32.52 
 
 
250 aa  105  9e-22  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  32.97 
 
 
259 aa  104  1e-21  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  36.46 
 
 
244 aa  103  2e-21  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  33.9 
 
 
262 aa  104  2e-21  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  36.46 
 
 
244 aa  103  2e-21  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal 
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  34.1 
 
 
244 aa  103  3e-21  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  32.54 
 
 
237 aa  102  5e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  31.25 
 
 
252 aa  101  1e-20  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  33.33 
 
 
246 aa  101  1e-20  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  34.27 
 
 
244 aa  100  2e-20  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  36.21 
 
 
255 aa  100  2e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  33.15 
 
 
376 aa  100  3e-20  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal 
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  35.33 
 
 
307 aa  99  6e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  34.27 
 
 
317 aa  99  7e-20  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  33.16 
 
 
243 aa  99  7e-20  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.173486 
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  34.27 
 
 
299 aa  98.6  8e-20  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  37.43 
 
 
253 aa  98.2  1e-19  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  32.65 
 
 
246 aa  97.8  1e-19  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  34.27 
 
 
298 aa  98.6  1e-19  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  32.65 
 
 
246 aa  97.4  2e-19  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  35.22 
 
 
263 aa  94.7  1e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal 
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  33.51 
 
 
255 aa  94.4  2e-18  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  32.8 
 
 
220 aa  93.6  3e-18  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  32.5 
 
 
235 aa  93.6  3e-18  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  27.2 
 
 
249 aa  93.6  3e-18  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_008044  TM1040_2547  Crp/FNR family transcriptional regulator  29.13 
 
 
246 aa  93.2  4e-18  Ruegeria sp. TM1040  Bacteria  normal  0.389339  normal  0.365128 
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  32.61 
 
 
255 aa  93.2  4e-18  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  33.33 
 
 
222 aa  92.8  5e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  31.6 
 
 
310 aa  92  9e-18  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  35.16 
 
 
243 aa  90.5  2e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000118444 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  30.32 
 
 
239 aa  90.5  2e-17  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  32.11 
 
 
246 aa  90.5  2e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal 
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  32.5 
 
 
239 aa  90.1  3e-17  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal 
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  32 
 
 
253 aa  89.7  4e-17  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  29.86 
 
 
239 aa  89.7  4e-17  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  31.28 
 
 
250 aa  89  7e-17  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  33.65 
 
 
253 aa  87.8  1e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  30.26 
 
 
231 aa  88.2  1e-16  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  30.09 
 
 
248 aa  87.8  2e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  29.46 
 
 
248 aa  87.4  2e-16  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  29.47 
 
 
240 aa  87.8  2e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  30 
 
 
384 aa  87.4  2e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  31.93 
 
 
246 aa  87.4  2e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  26.61 
 
 
249 aa  86.7  3e-16  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  34.15 
 
 
238 aa  86.7  3e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  32.74 
 
 
281 aa  87  3e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.999867 
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  34.15 
 
 
238 aa  86.7  3e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  26.96 
 
 
252 aa  87  3e-16  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  29.95 
 
 
384 aa  86.7  3e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  28.27 
 
 
249 aa  86.7  4e-16  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  28.27 
 
 
250 aa  86.3  4e-16  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  29.71 
 
 
268 aa  86.3  4e-16  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  29.65 
 
 
249 aa  86.3  4e-16  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  28.44 
 
 
250 aa  85.9  5e-16  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  35.09 
 
 
250 aa  85.9  5e-16  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  28.84 
 
 
248 aa  85.9  6e-16  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  28.96 
 
 
239 aa  85.9  6e-16  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  28.84 
 
 
248 aa  85.9  6e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  28.27 
 
 
250 aa  85.5  7e-16  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  27.72 
 
 
254 aa  85.5  8e-16  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  29.5 
 
 
227 aa  85.5  8e-16  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  26.07 
 
 
250 aa  84.7  0.000000000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  31.46 
 
 
208 aa  85.1  0.000000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  32.07 
 
 
315 aa  84.7  0.000000000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  30.89 
 
 
250 aa  84.7  0.000000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal 
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  34.78 
 
 
236 aa  84.7  0.000000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  29.73 
 
 
240 aa  84  0.000000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  33.33 
 
 
226 aa  84  0.000000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  27.03 
 
 
250 aa  84.3  0.000000000000002  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  28.96 
 
 
250 aa  84  0.000000000000002  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  27.03 
 
 
250 aa  84.3  0.000000000000002  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  33.52 
 
 
249 aa  83.6  0.000000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  28.93 
 
 
256 aa  83.6  0.000000000000003  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  32.37 
 
 
230 aa  83.6  0.000000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
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