More than 300 homologs were found in PanDaTox collection
for query gene Sama_1227 on replicon NC_008700
Organism: Shewanella amazonensis SB2B



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008700  Sama_1227  HU family DNA-binding protein  100 
 
 
90 aa  175  2e-43  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  94.44 
 
 
91 aa  166  1e-40  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  94.44 
 
 
90 aa  165  2e-40  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  94.44 
 
 
90 aa  165  2e-40  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  94.44 
 
 
90 aa  165  2e-40  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  94.44 
 
 
90 aa  165  2e-40  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  94.44 
 
 
90 aa  165  2e-40  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  94.44 
 
 
90 aa  165  2e-40  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  94.44 
 
 
90 aa  165  2e-40  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  94.44 
 
 
90 aa  165  2e-40  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  94.44 
 
 
90 aa  165  2e-40  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  93.33 
 
 
90 aa  164  2.9999999999999998e-40  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  92.22 
 
 
90 aa  163  6.9999999999999995e-40  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  91.11 
 
 
90 aa  160  5.0000000000000005e-39  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  91.11 
 
 
90 aa  160  5.0000000000000005e-39  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  91.11 
 
 
90 aa  160  6e-39  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  78.89 
 
 
90 aa  143  6e-34  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  77.78 
 
 
90 aa  143  8.000000000000001e-34  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  77.78 
 
 
90 aa  143  8.000000000000001e-34  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  77.78 
 
 
90 aa  143  8.000000000000001e-34  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  77.78 
 
 
90 aa  143  8.000000000000001e-34  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  77.78 
 
 
90 aa  143  8.000000000000001e-34  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  76.67 
 
 
90 aa  142  2e-33  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  76.67 
 
 
90 aa  142  2e-33  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  76.67 
 
 
90 aa  142  2e-33  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  76.67 
 
 
90 aa  142  2e-33  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_012892  B21_00396  hypothetical protein  76.67 
 
 
90 aa  142  2e-33  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  76.67 
 
 
90 aa  142  2e-33  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  76.67 
 
 
90 aa  142  2e-33  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  76.67 
 
 
90 aa  142  2e-33  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  76.67 
 
 
90 aa  142  2e-33  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  75.56 
 
 
90 aa  141  3e-33  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  75.56 
 
 
90 aa  141  3e-33  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  75.56 
 
 
90 aa  141  3e-33  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  75.56 
 
 
101 aa  140  6e-33  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  75.56 
 
 
90 aa  139  9.999999999999999e-33  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  74.44 
 
 
90 aa  139  1.9999999999999998e-32  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  74.44 
 
 
90 aa  139  1.9999999999999998e-32  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_003910  CPS_1873  HU family DNA-binding protein  74.44 
 
 
91 aa  138  3e-32  Colwellia psychrerythraea 34H  Bacteria  normal  0.972501  n/a   
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  74.44 
 
 
90 aa  137  3.9999999999999997e-32  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  74.44 
 
 
90 aa  137  6e-32  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2063  HU family DNA-binding protein  72.22 
 
 
91 aa  132  9.999999999999999e-31  Colwellia psychrerythraea 34H  Bacteria  normal  0.832344  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  68.89 
 
 
90 aa  132  1.9999999999999998e-30  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_008700  Sama_3158  histone-like DNA-binding protein  72.22 
 
 
90 aa  132  1.9999999999999998e-30  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  67.78 
 
 
90 aa  130  5e-30  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  70 
 
 
90 aa  130  6.999999999999999e-30  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  70.79 
 
 
90 aa  130  7.999999999999999e-30  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  67.78 
 
 
90 aa  128  2.0000000000000002e-29  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_009457  VC0395_A1509  DNA-binding protein HU-beta  67.78 
 
 
90 aa  129  2.0000000000000002e-29  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000490467  n/a   
 
 
-
 
NC_002947  PP_2303  histone family protein DNA-binding protein  72.22 
 
 
90 aa  128  3e-29  Pseudomonas putida KT2440  Bacteria  normal  0.0561689  hitchhiker  0.000233767 
 
 
-
 
NC_009512  Pput_3466  histone family protein DNA-binding protein  72.22 
 
 
90 aa  128  3e-29  Pseudomonas putida F1  Bacteria  normal  0.360259  hitchhiker  0.000212777 
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  70 
 
 
90 aa  127  3e-29  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  67.78 
 
 
98 aa  127  4.0000000000000003e-29  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  66.67 
 
 
90 aa  127  4.0000000000000003e-29  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  71.11 
 
 
90 aa  127  6e-29  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_008463  PA14_41210  DNA-binding protein HU  73.33 
 
 
90 aa  127  6e-29  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0758892  normal  0.416187 
 
 
-
 
NC_009656  PSPA7_3493  DNA-binding protein HU  73.33 
 
 
90 aa  127  6e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  0.175993  n/a   
 
 
-
 
NC_010322  PputGB1_1905  histone family protein DNA-binding protein  71.11 
 
 
90 aa  126  8.000000000000001e-29  Pseudomonas putida GB-1  Bacteria  normal  0.173408  hitchhiker  0.000216257 
 
 
-
 
NC_010717  PXO_02474  DNA-binding protein HU  67.78 
 
 
90 aa  126  8.000000000000001e-29  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  68.89 
 
 
90 aa  126  8.000000000000001e-29  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01420  nucleoid DNA-binding protein  66.67 
 
 
90 aa  126  8.000000000000001e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012560  Avin_23600  histone-like DNA-binding protein  72.22 
 
 
90 aa  125  2.0000000000000002e-28  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2053  nucleoid protein HU beta subunit  72.22 
 
 
90 aa  125  2.0000000000000002e-28  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000457213  normal  0.0670315 
 
 
-
 
NC_010501  PputW619_1745  histone family protein DNA-binding protein  71.11 
 
 
90 aa  125  3e-28  Pseudomonas putida W619  Bacteria  normal  0.693876  hitchhiker  0.00044049 
 
 
-
 
NC_007947  Mfla_0016  nucleoid protein HU beta subunit  70 
 
 
90 aa  125  3e-28  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  67.78 
 
 
90 aa  124  4.0000000000000003e-28  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  65.56 
 
 
90 aa  124  4.0000000000000003e-28  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0548  HU family DNA-binding protein  66.67 
 
 
90 aa  124  5e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  66.67 
 
 
91 aa  124  6e-28  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_008321  Shewmr4_0548  histone family protein DNA-binding protein  66.67 
 
 
90 aa  124  6e-28  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0547  histone family protein DNA-binding protein  66.67 
 
 
90 aa  124  6e-28  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  64.44 
 
 
90 aa  123  8.000000000000001e-28  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2879  histone family protein DNA-binding protein  70 
 
 
90 aa  123  9e-28  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1666  histone family protein DNA-binding protein  68.89 
 
 
90 aa  122  2e-27  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  63.33 
 
 
90 aa  122  2e-27  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_3482  histone family protein DNA-binding protein  66.67 
 
 
90 aa  122  2e-27  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  64.44 
 
 
90 aa  120  4e-27  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal 
 
 
-
 
NC_009997  Sbal195_3943  histone family protein DNA-binding protein  64.44 
 
 
90 aa  120  5e-27  Shewanella baltica OS195  Bacteria  normal  0.37618  normal 
 
 
-
 
NC_011992  Dtpsy_1187  histone family protein DNA-binding protein  68.89 
 
 
90 aa  120  5e-27  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3817  histone family protein DNA-binding protein  64.44 
 
 
90 aa  120  5e-27  Shewanella baltica OS185  Bacteria  normal  0.531766  n/a   
 
 
-
 
NC_009052  Sbal_0507  histone family protein DNA-binding protein  64.44 
 
 
90 aa  120  5e-27  Shewanella baltica OS155  Bacteria  normal  0.0267079  n/a   
 
 
-
 
NC_008782  Ajs_2621  histone family protein DNA-binding protein  68.89 
 
 
90 aa  120  5e-27  Acidovorax sp. JS42  Bacteria  normal  0.348082  normal  0.0833374 
 
 
-
 
NC_009438  Sputcn32_3325  histone family protein DNA-binding protein  64.44 
 
 
90 aa  120  5e-27  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3761  histone family protein DNA-binding protein  64.44 
 
 
90 aa  120  5e-27  Shewanella baltica OS223  Bacteria  normal  normal  0.768478 
 
 
-
 
NC_008781  Pnap_1633  histone family protein DNA-binding protein  68.89 
 
 
90 aa  120  7e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0213  transcriptional regulator HU subunit alpha  66.29 
 
 
90 aa  120  7e-27  Enterobacter sp. 638  Bacteria  hitchhiker  0.00855152  normal  0.0112419 
 
 
-
 
NC_009832  Spro_0290  transcriptional regulator HU subunit alpha  66.29 
 
 
90 aa  119  9e-27  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0031706  hitchhiker  0.00995537 
 
 
-
 
NC_012917  PC1_0222  transcriptional regulator HU subunit alpha  66.29 
 
 
90 aa  119  9.999999999999999e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.390191  n/a   
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  64.44 
 
 
91 aa  119  9.999999999999999e-27  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_013421  Pecwa_0226  transcriptional regulator HU subunit alpha  66.29 
 
 
90 aa  119  9.999999999999999e-27  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0975648  n/a   
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  64.44 
 
 
90 aa  119  9.999999999999999e-27  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_007948  Bpro_3065  nucleoid protein Hbs  68.89 
 
 
90 aa  119  9.999999999999999e-27  Polaromonas sp. JS666  Bacteria  normal  0.135138  normal  0.394857 
 
 
-
 
NC_011353  ECH74115_5469  transcriptional regulator HU subunit alpha  65.17 
 
 
90 aa  118  1.9999999999999998e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.129609  normal 
 
 
-
 
NC_010498  EcSMS35_4448  transcriptional regulator HU subunit alpha  65.17 
 
 
90 aa  118  1.9999999999999998e-26  Escherichia coli SMS-3-5  Bacteria  normal  0.302586  hitchhiker  0.00101008 
 
 
-
 
NC_010468  EcolC_4025  transcriptional regulator HU subunit alpha  65.17 
 
 
90 aa  118  1.9999999999999998e-26  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0158227 
 
 
-
 
NC_011083  SeHA_C4501  transcriptional regulator HU subunit alpha  65.17 
 
 
90 aa  118  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.358882  normal  0.0495174 
 
 
-
 
NC_011149  SeAg_B4414  transcriptional regulator HU subunit alpha  65.17 
 
 
90 aa  118  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.18011  n/a   
 
 
-
 
NC_010658  SbBS512_E4491  transcriptional regulator HU subunit alpha  65.17 
 
 
90 aa  118  1.9999999999999998e-26  Shigella boydii CDC 3083-94  Bacteria  normal  0.0852675  n/a   
 
 
-
 
NC_011080  SNSL254_A4503  transcriptional regulator HU subunit alpha  65.17 
 
 
90 aa  118  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0164141 
 
 
-
 
NC_009801  EcE24377A_4543  transcriptional regulator HU subunit alpha  65.17 
 
 
90 aa  118  1.9999999999999998e-26  Escherichia coli E24377A  Bacteria  normal  0.440082  n/a   
 
 
-
 
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