6 homologs were found in PanDaTox collection
for query gene Sama_0047 on replicon NC_008700
Organism: Shewanella amazonensis SB2B



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008700  Sama_0047  hypothetical protein  100 
 
 
88 aa  185  2e-46  Shewanella amazonensis SB2B  Bacteria  normal  0.686583  normal  0.243767 
 
 
-
 
NC_009092  Shew_3732  collagenase  53.62 
 
 
603 aa  73.6  8e-13  Shewanella loihica PV-4  Bacteria  decreased coverage  0.00527905  hitchhiker  0.00286894 
 
 
-
 
NC_009901  Spea_0035  collagenase  45.21 
 
 
519 aa  65.1  3e-10  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0039  collagenase  41.89 
 
 
590 aa  64.7  4e-10  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  4.49009e-05  normal  0.0513701 
 
 
-
 
NC_010506  Swoo_0042  collagenase  43.84 
 
 
587 aa  60.5  8e-09  Shewanella woodyi ATCC 51908  Bacteria  normal  0.53761  normal  0.627345 
 
 
-
 
NC_003910  CPS_2237  collagenase  37.14 
 
 
667 aa  53.1  1e-06  Colwellia psychrerythraea 34H  Bacteria  normal  0.971967  n/a   
 
 
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