More than 300 homologs were found in PanDaTox collection
for query gene SYO3AOP1_0003 on replicon NC_010730
Organism: Sulfurihydrogenibium sp. YO3AOP1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010730  SYO3AOP1_0003  RNA methyltransferase, TrmH family, group 3  100 
 
 
250 aa  494  1e-139  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_0313  RNA methyltransferase, TrmH family, group 3  61.13 
 
 
251 aa  318  3.9999999999999996e-86  Hydrogenobaculum sp. Y04AAS1  Bacteria  decreased coverage  0.000179001  n/a   
 
 
-
 
NC_010320  Teth514_0848  RNA methyltransferase  42.44 
 
 
247 aa  199  1.9999999999999998e-50  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000264025  n/a   
 
 
-
 
NC_010718  Nther_0174  RNA methyltransferase, TrmH family, group 3  40.93 
 
 
247 aa  192  5e-48  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000034032  normal 
 
 
-
 
NC_013411  GYMC61_0088  RNA methyltransferase, TrmH family, group 3  40.33 
 
 
246 aa  189  2.9999999999999997e-47  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010184  BcerKBAB4_0086  RNA methyltransferase  42.8 
 
 
247 aa  187  2e-46  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0239075  n/a   
 
 
-
 
NC_011772  BCG9842_B5214  RNA methyltransferase, TrmH family, group 3  41.98 
 
 
247 aa  183  3e-45  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000196945  unclonable  9.19298e-26 
 
 
-
 
NC_003909  BCE_0091  RNA methyltransferase  41.56 
 
 
247 aa  182  4.0000000000000006e-45  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00797863  n/a   
 
 
-
 
NC_005945  BAS0091  RNA methyltransferase  41.56 
 
 
247 aa  182  4.0000000000000006e-45  Bacillus anthracis str. Sterne  Bacteria  normal  0.678867  n/a   
 
 
-
 
NC_005957  BT9727_0088  tRNA/rRNA methyltransferase SpoU  41.56 
 
 
247 aa  182  4.0000000000000006e-45  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000158072  n/a   
 
 
-
 
NC_006274  BCZK0087  TrmH family tRNA methyltransferase  41.56 
 
 
247 aa  182  4.0000000000000006e-45  Bacillus cereus E33L  Bacteria  normal  0.528227  n/a   
 
 
-
 
NC_011725  BCB4264_A0112  RNA methyltransferase, TrmH family, group 3  41.56 
 
 
247 aa  182  4.0000000000000006e-45  Bacillus cereus B4264  Bacteria  hitchhiker  0.0011476  n/a   
 
 
-
 
NC_011658  BCAH187_A0122  RNA methyltransferase, TrmH family, group 3  41.56 
 
 
247 aa  182  4.0000000000000006e-45  Bacillus cereus AH187  Bacteria  hitchhiker  0.00000258465  n/a   
 
 
-
 
NC_007530  GBAA_0091  RNA methyltransferase  41.56 
 
 
247 aa  182  4.0000000000000006e-45  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.000000227809  n/a   
 
 
-
 
NC_011773  BCAH820_0102  RNA methyltransferase, TrmH family, group 3  41.56 
 
 
247 aa  182  4.0000000000000006e-45  Bacillus cereus AH820  Bacteria  n/a    unclonable  4.238e-61 
 
 
-
 
NC_012793  GWCH70_0092  RNA methyltransferase, TrmH family, group 3  39.51 
 
 
245 aa  180  2e-44  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.0000000607271  n/a   
 
 
-
 
NC_008261  CPF_2734  RNA methyltransferase  41.25 
 
 
289 aa  179  4e-44  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2420  RNA methyltransferase  41.25 
 
 
289 aa  179  4e-44  Clostridium perfringens SM101  Bacteria  hitchhiker  0.00228978  n/a   
 
 
-
 
NC_009674  Bcer98_0086  RNA methyltransferase  39.92 
 
 
247 aa  178  9e-44  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00000284808  n/a   
 
 
-
 
NC_012034  Athe_2043  RNA methyltransferase, TrmH family, group 3  39.09 
 
 
253 aa  177  1e-43  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000129806  n/a   
 
 
-
 
NC_009012  Cthe_2060  RNA methyltransferase  40.59 
 
 
277 aa  177  1e-43  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2172  RNA methyltransferase TrmH, group 3  39.57 
 
 
237 aa  176  2e-43  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0146478  n/a   
 
 
-
 
NC_008009  Acid345_1003  RNA methyltransferase TrmH, group 3  39.33 
 
 
261 aa  173  1.9999999999999998e-42  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.60779  normal  0.0289199 
 
 
-
 
NC_009632  SaurJH1_0568  RNA methyltransferase  39.75 
 
 
248 aa  172  3.9999999999999995e-42  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.927994  n/a   
 
 
-
 
NC_009487  SaurJH9_0554  RNA methyltransferase  39.75 
 
 
248 aa  172  3.9999999999999995e-42  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.850775  n/a   
 
 
-
 
NC_011661  Dtur_1474  RNA methyltransferase, TrmH family, group 3  39.32 
 
 
239 aa  171  6.999999999999999e-42  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0162513  n/a   
 
 
-
 
NC_011898  Ccel_3320  RNA methyltransferase, TrmH family, group 3  41 
 
 
315 aa  169  5e-41  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000000334493  n/a   
 
 
-
 
NC_008578  Acel_0083  RNA methyltransferase  36.93 
 
 
250 aa  167  1e-40  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_00990  RNA methyltransferase  36.82 
 
 
244 aa  166  2e-40  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000000314375  n/a   
 
 
-
 
NC_008346  Swol_2352  putative tRNA/rRNA methyltransferase YacO  37.34 
 
 
248 aa  167  2e-40  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.177652  n/a   
 
 
-
 
NC_013162  Coch_0728  RNA methyltransferase, TrmH family, group 3  41.25 
 
 
244 aa  165  5.9999999999999996e-40  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP0172  RNA methyltransferase  37.92 
 
 
249 aa  164  2.0000000000000002e-39  Staphylococcus epidermidis RP62A  Bacteria  normal  0.0806813  n/a   
 
 
-
 
NC_011729  PCC7424_4146  RNA methyltransferase, TrmH family, group 3  36.48 
 
 
310 aa  164  2.0000000000000002e-39  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010424  Daud_0190  RNA methyltransferase  36.55 
 
 
251 aa  163  2.0000000000000002e-39  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.153268  n/a   
 
 
-
 
NC_011830  Dhaf_0401  RNA methyltransferase, TrmH family, group 3  36.4 
 
 
246 aa  162  3e-39  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000000436094  n/a   
 
 
-
 
NC_013205  Aaci_2730  RNA methyltransferase, TrmH family, group 3  34.48 
 
 
255 aa  162  4.0000000000000004e-39  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.751116  n/a   
 
 
-
 
NC_013525  Tter_1828  RNA methyltransferase, TrmH family, group 3  38.93 
 
 
264 aa  162  4.0000000000000004e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_0196  RNA methyltransferase  36.25 
 
 
243 aa  162  6e-39  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00000588208  n/a   
 
 
-
 
NC_013216  Dtox_0267  RNA methyltransferase, TrmH family, group 3  37.13 
 
 
246 aa  162  6e-39  Desulfotomaculum acetoxidans DSM 771  Bacteria  unclonable  0.00000000223613  normal  0.011395 
 
 
-
 
NC_007413  Ava_4413  RNA methyltransferase TrmH, group 3  34.82 
 
 
327 aa  161  8.000000000000001e-39  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0405  RNA methyltransferase, TrmH family, group 3  36.76 
 
 
254 aa  161  1e-38  Ammonifex degensii KC4  Bacteria  hitchhiker  0.0083776  n/a   
 
 
-
 
NC_009513  Lreu_0305  RNA methyltransferase  34.84 
 
 
249 aa  160  1e-38  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000000127836  n/a   
 
 
-
 
NC_011146  Gbem_2889  RNA methyltransferase, TrmH family, group 3  33.06 
 
 
248 aa  160  2e-38  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_0340  rRNA methylase  35.25 
 
 
251 aa  160  2e-38  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000000065422  hitchhiker  0.000000457527 
 
 
-
 
NC_013517  Sterm_3084  RNA methyltransferase, TrmH family, group 3  40.34 
 
 
234 aa  159  3e-38  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_1425  rRNA methylase  34.05 
 
 
233 aa  159  3e-38  Oenococcus oeni PSU-1  Bacteria  hitchhiker  0.0000022514  n/a   
 
 
-
 
NC_008531  LEUM_1822  rRNA methylase  35.86 
 
 
249 aa  159  3e-38  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0712  RNA methyltransferase, TrmH family, group 3  33.76 
 
 
306 aa  159  5e-38  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1336  RNA methyltransferase, TrmH family, group 3  32.66 
 
 
249 aa  159  5e-38  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000822091 
 
 
-
 
NC_008576  Mmc1_0416  RNA methyltransferase  35.08 
 
 
246 aa  159  5e-38  Magnetococcus sp. MC-1  Bacteria  normal  0.896719  normal  0.93402 
 
 
-
 
NC_007644  Moth_2481  RNA methyltransferase TrmH, group 3  38.24 
 
 
246 aa  156  3e-37  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00000000314444  hitchhiker  0.00338936 
 
 
-
 
NC_010831  Cphamn1_0590  RNA methyltransferase, TrmH family, group 3  36.4 
 
 
247 aa  156  3e-37  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.0629521 
 
 
-
 
NC_008312  Tery_2313  RNA methyltransferase  36.25 
 
 
288 aa  156  3e-37  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0718596 
 
 
-
 
NC_008609  Ppro_1677  RNA methyltransferase  34.18 
 
 
251 aa  156  3e-37  Pelobacter propionicus DSM 2379  Bacteria  normal  0.756814  n/a   
 
 
-
 
NC_009523  RoseRS_3458  RNA methyltransferase  37.04 
 
 
252 aa  156  3e-37  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0336691 
 
 
-
 
NC_010814  Glov_1867  RNA methyltransferase, TrmH family, group 3  35.83 
 
 
246 aa  155  5.0000000000000005e-37  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0209  RNA methyltransferase  37.82 
 
 
251 aa  155  5.0000000000000005e-37  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0533  RNA methyltransferase, TrmH family, group 3  39.33 
 
 
243 aa  155  8e-37  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_19440  rRNA methylase, putative, group 3  34.71 
 
 
256 aa  155  9e-37  Slackia heliotrinireducens DSM 20476  Bacteria  normal  hitchhiker  0.000000129696 
 
 
-
 
NC_014230  CA2559_05650  putative tRNA:rRNA methyltransferase  39.5 
 
 
245 aa  154  9e-37  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_0306  TrmH family tRNA methyltransferase  37.35 
 
 
268 aa  154  1e-36  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_3322  RNA methyltransferase  34.58 
 
 
248 aa  153  2e-36  Clostridium phytofermentans ISDg  Bacteria  normal  0.752431  n/a   
 
 
-
 
NC_008532  STER_0122  tRNA/rRNA methyltransferase  37.82 
 
 
247 aa  154  2e-36  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2067  RNA methyltransferase, TrmH family, group 3  34.55 
 
 
326 aa  153  2.9999999999999998e-36  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_007335  PMN2A_0262  RNA methyltransferase TrmH, group 3  36.97 
 
 
416 aa  153  2.9999999999999998e-36  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_1180  RNA methyltransferase, TrmH family, group 3  34.45 
 
 
338 aa  152  2.9999999999999998e-36  Atopobium parvulum DSM 20469  Bacteria  hitchhiker  0.0000228447  hitchhiker  0.0000274792 
 
 
-
 
NC_008025  Dgeo_2022  RNA methyltransferase TrmH, group 3  34.02 
 
 
246 aa  153  2.9999999999999998e-36  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4394  RNA methyltransferase  38.76 
 
 
248 aa  153  2.9999999999999998e-36  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.528228  normal  0.180351 
 
 
-
 
NC_011891  A2cp1_2368  RNA methyltransferase, TrmH family, group 3  35.12 
 
 
256 aa  152  4e-36  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.900248  n/a   
 
 
-
 
NC_008819  NATL1_09311  RNA methyltransferase TrmH, group 3  36.97 
 
 
442 aa  152  5e-36  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.0566162 
 
 
-
 
NC_011145  AnaeK_2280  RNA methyltransferase, TrmH family, group 3  35.12 
 
 
256 aa  152  7e-36  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2230  RNA methyltransferase  35.54 
 
 
245 aa  151  8.999999999999999e-36  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.329348  normal  0.0204347 
 
 
-
 
NC_009439  Pmen_0644  RNA methyltransferase  36.09 
 
 
250 aa  150  1e-35  Pseudomonas mendocina ymp  Bacteria  normal  hitchhiker  0.000634261 
 
 
-
 
NC_007512  Plut_1616  RNA methyltransferase TrmH, group 3  34.73 
 
 
248 aa  150  2e-35  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.439996 
 
 
-
 
NC_010816  BLD_1473  rRNA methylase  32.56 
 
 
330 aa  150  2e-35  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2661  RNA methyltransferase, TrmH family, group 3  35.83 
 
 
256 aa  150  2e-35  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_0264  RNA methyltransferase, TrmH family, group 3  33.75 
 
 
292 aa  150  2e-35  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0265  RNA methyltransferase, TrmH family, group 3  33.75 
 
 
292 aa  150  2e-35  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007760  Adeh_1583  RNA methyltransferase TrmH, group 3  34.71 
 
 
256 aa  150  3e-35  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.780301  n/a   
 
 
-
 
NC_009441  Fjoh_0406  RNA methyltransferase  36.97 
 
 
244 aa  149  3e-35  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0940631  n/a   
 
 
-
 
NC_008527  LACR_2065  rRNA methylase  36.55 
 
 
242 aa  149  4e-35  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_0572  RNA methyltransferase  35.56 
 
 
252 aa  149  4e-35  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2952  RNA methyltransferase, TrmH family, group 3  34.98 
 
 
327 aa  149  5e-35  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.844398  n/a   
 
 
-
 
NC_013721  HMPREF0424_1346  RNA methyltransferase, TrmH family, group 3  31.42 
 
 
331 aa  149  5e-35  Gardnerella vaginalis 409-05  Bacteria  n/a    hitchhiker  0.00762958 
 
 
-
 
NC_009972  Haur_3773  RNA methyltransferase  33.06 
 
 
246 aa  148  7e-35  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_0348  RNA methyltransferase, TrmH family, group 3  38.98 
 
 
232 aa  148  7e-35  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009338  Mflv_1447  RNA methyltransferase  31.98 
 
 
314 aa  148  7e-35  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.812422 
 
 
-
 
NC_013946  Mrub_0116  RNA methyltransferase TrmH family, group 3  34.62 
 
 
238 aa  148  8e-35  Meiothermus ruber DSM 1279  Bacteria  normal  0.328344  normal  0.298059 
 
 
-
 
NC_014151  Cfla_0672  RNA methyltransferase, TrmH family, group 3  32.93 
 
 
333 aa  147  1.0000000000000001e-34  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.927716  hitchhiker  0.000812989 
 
 
-
 
NC_009656  PSPA7_5663  putative rRNA methylase  35.71 
 
 
248 aa  147  1.0000000000000001e-34  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_2285  TrmA family RNA methyltransferase  33.33 
 
 
323 aa  148  1.0000000000000001e-34  'Nostoc azollae' 0708  Bacteria  normal  0.240402  n/a   
 
 
-
 
NC_011884  Cyan7425_2629  RNA methyltransferase, TrmH family, group 3  32.4 
 
 
387 aa  147  2.0000000000000003e-34  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.821515 
 
 
-
 
NC_008463  PA14_65190  TrmH family RNA methyltransferase , group 3  35.27 
 
 
248 aa  147  2.0000000000000003e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2692  RNA methyltransferase, TrmH family, group 3  35.41 
 
 
252 aa  146  3e-34  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.107399  normal  0.310165 
 
 
-
 
NC_010830  Aasi_1164  hypothetical protein  35.74 
 
 
246 aa  146  3e-34  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.2944 
 
 
-
 
NC_013522  Taci_0851  RNA methyltransferase, TrmH family, group 3  36.67 
 
 
256 aa  146  3e-34  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.0735574  n/a   
 
 
-
 
NC_014210  Ndas_4313  RNA methyltransferase, TrmH family, group 3  32.93 
 
 
320 aa  145  5e-34  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1356  RNA methyltransferase TrmH, group 3  31.67 
 
 
250 aa  145  6e-34  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000394989  hitchhiker  8.416419999999999e-20 
 
 
-
 
NC_013739  Cwoe_1692  RNA methyltransferase, TrmH family, group 3  36.13 
 
 
256 aa  145  7.0000000000000006e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.31979  normal  0.210627 
 
 
-
 
NC_008726  Mvan_5337  RNA methyltransferase  31.58 
 
 
314 aa  145  8.000000000000001e-34  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
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