More than 300 homologs were found in PanDaTox collection
for query gene SO_3689 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008700  Sama_2861  response regulator receiver protein  67.78 
 
 
504 aa  655    Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3689  sigma-54 dependent nitrogen response regulator  100 
 
 
475 aa  972    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_3719  two component, sigma54 specific, Fis family transcriptional regulator  69.44 
 
 
499 aa  695    Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.540881 
 
 
-
 
NC_009052  Sbal_3338  two component, sigma54 specific, Fis family transcriptional regulator  80.6 
 
 
493 aa  805    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3361  two component, sigma54 specific, Fis family transcriptional regulator  68.96 
 
 
509 aa  701    Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1022  two component, sigma54 specific, transcriptional regulator, Fis family  79.61 
 
 
502 aa  798    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0726  two component, sigma54 specific, Fis family transcriptional regulator  72.06 
 
 
494 aa  713    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_1034  two component, sigma54 specific, Fis family transcriptional regulator  79.22 
 
 
503 aa  800    Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1001  two component, sigma54 specific, Fis family transcriptional regulator  79.22 
 
 
502 aa  793    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2847  sigma-54 factor, interaction region  69.51 
 
 
496 aa  697    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4069  two component, sigma54 specific, Fis family transcriptional regulator  70.31 
 
 
485 aa  692    Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0866  two component, sigma54 specific, Fis family transcriptional regulator  86.98 
 
 
484 aa  848    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3156  two component, sigma54 specific, Fis family transcriptional regulator  87.4 
 
 
484 aa  848    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0901  two component, sigma54 specific, transcriptional regulator, Fis family protein  72.73 
 
 
482 aa  701    Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.520731  n/a   
 
 
-
 
NC_008577  Shewana3_3257  two component, sigma54 specific, Fis family transcriptional regulator  88.7 
 
 
478 aa  857    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_3505  two component, sigma54 specific, transcriptional regulator, Fis family  52.1 
 
 
448 aa  469  1.0000000000000001e-131  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.391305  normal  0.450038 
 
 
-
 
NC_003910  CPS_0576  sigma-54 dependent DNA-binding response regulator  54.01 
 
 
435 aa  455  1e-127  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0374  two component, sigma54 specific, Fis family transcriptional regulator  42.47 
 
 
471 aa  358  1.9999999999999998e-97  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.774685 
 
 
-
 
NC_010571  Oter_1904  two component, sigma54 specific, Fis family transcriptional regulator  40.58 
 
 
456 aa  346  5e-94  Opitutus terrae PB90-1  Bacteria  normal  normal  0.865916 
 
 
-
 
NC_012880  Dd703_0097  two component, sigma54 specific, transcriptional regulator, Fis family  38.25 
 
 
466 aa  337  3.9999999999999995e-91  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0306  two component, sigma54 specific, Fis family transcriptional regulator  38.96 
 
 
457 aa  334  2e-90  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0689092 
 
 
-
 
NC_003910  CPS_0778  sigma-54 dependent DNA-binding response regulator  39.34 
 
 
461 aa  330  4e-89  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0082  two component, sigma54 specific, transcriptional regulator, Fis family  38.51 
 
 
466 aa  328  1.0000000000000001e-88  Dickeya zeae Ech1591  Bacteria  normal  0.728671  n/a   
 
 
-
 
NC_002950  PG0747  sigma-54 dependent DNA-binding response regulator  40.49 
 
 
464 aa  326  6e-88  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  40.79 
 
 
455 aa  321  1.9999999999999998e-86  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_008554  Sfum_0853  two component, sigma54 specific, Fis family transcriptional regulator  44.33 
 
 
502 aa  319  7e-86  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_2121  sigma-54 dependent DNA-binding response regulator  40.69 
 
 
465 aa  318  1e-85  Colwellia psychrerythraea 34H  Bacteria  normal  0.798408  n/a   
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  38.92 
 
 
470 aa  318  1e-85  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_008347  Mmar10_2539  two component, sigma54 specific, Fis family transcriptional regulator  39.39 
 
 
487 aa  318  1e-85  Maricaulis maris MCS10  Bacteria  normal  0.846517  normal 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  39.5 
 
 
463 aa  316  7e-85  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_003910  CPS_4418  sigma-54 dependent DNA-binding response regulator  40.21 
 
 
450 aa  315  9.999999999999999e-85  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0953  two component, sigma54 specific, transcriptional regulator, Fis family  38.54 
 
 
450 aa  313  4.999999999999999e-84  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.283523  normal 
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  37.71 
 
 
452 aa  312  1e-83  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  38.97 
 
 
470 aa  309  6.999999999999999e-83  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  39.13 
 
 
473 aa  308  1.0000000000000001e-82  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3419  two component, sigma54 specific, transcriptional regulator, Fis family  39.21 
 
 
455 aa  308  2.0000000000000002e-82  Anaeromyxobacter sp. K  Bacteria  normal  0.683267  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  39.13 
 
 
473 aa  308  2.0000000000000002e-82  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  39.13 
 
 
473 aa  308  2.0000000000000002e-82  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_011891  A2cp1_3483  two component, sigma54 specific, transcriptional regulator, Fis family  39 
 
 
455 aa  306  7e-82  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0480061  n/a   
 
 
-
 
NC_003910  CPS_4704  sigma-54 dependent DNA-binding response regulator  38.43 
 
 
483 aa  305  8.000000000000001e-82  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  38.41 
 
 
461 aa  305  1.0000000000000001e-81  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_009441  Fjoh_1332  two component, sigma54 specific, Fis family transcriptional regulator  36.33 
 
 
447 aa  305  1.0000000000000001e-81  Flavobacterium johnsoniae UW101  Bacteria  normal  0.311048  n/a   
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  39.04 
 
 
460 aa  305  2.0000000000000002e-81  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3338  two component, sigma54 specific, Fis family transcriptional regulator  38.17 
 
 
453 aa  304  2.0000000000000002e-81  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.693368  n/a   
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  38.62 
 
 
451 aa  304  2.0000000000000002e-81  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  37.6 
 
 
452 aa  303  5.000000000000001e-81  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_013037  Dfer_5614  two component, sigma54 specific, transcriptional regulator, Fis family  39.01 
 
 
457 aa  303  6.000000000000001e-81  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  37.34 
 
 
455 aa  301  1e-80  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  39 
 
 
452 aa  301  1e-80  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  38.91 
 
 
453 aa  300  5e-80  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4586  two component, sigma54 specific, transcriptional regulator, Fis family  38.91 
 
 
456 aa  300  5e-80  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00347472  normal 
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  37.84 
 
 
466 aa  300  5e-80  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_011146  Gbem_1426  two component, sigma54 specific, transcriptional regulator, Fis family  39.22 
 
 
444 aa  300  6e-80  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  39.25 
 
 
453 aa  299  6e-80  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_013440  Hoch_2510  two component, sigma54 specific, transcriptional regulator, Fis family  37.45 
 
 
472 aa  299  6e-80  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0791346  normal 
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  38.95 
 
 
456 aa  299  6e-80  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  38.46 
 
 
454 aa  299  7e-80  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  38.33 
 
 
457 aa  298  1e-79  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_002950  PG0016  sigma-54 dependent DNA-binding response regulator  39.25 
 
 
449 aa  298  2e-79  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.420092 
 
 
-
 
NC_012918  GM21_2828  two component, sigma54 specific, transcriptional regulator, Fis family  39.43 
 
 
444 aa  298  2e-79  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  36.91 
 
 
459 aa  296  4e-79  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  38.25 
 
 
457 aa  296  4e-79  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4674  two component, sigma54 specific, transcriptional regulator, Fis family  37.24 
 
 
463 aa  296  6e-79  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  39.5 
 
 
448 aa  295  1e-78  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  37.66 
 
 
457 aa  295  1e-78  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1988  two component, sigma54 specific, transcriptional regulator, Fis family  36.74 
 
 
509 aa  295  1e-78  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  38.62 
 
 
458 aa  294  2e-78  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  37.84 
 
 
464 aa  294  2e-78  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0327  response regulator receiver domain-containing protein  37.89 
 
 
503 aa  294  2e-78  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.348784 
 
 
-
 
NC_013525  Tter_0790  two component, sigma54 specific, transcriptional regulator, Fis family  42.12 
 
 
466 aa  293  3e-78  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_01588  two-component system, response regulator  37.5 
 
 
464 aa  294  3e-78  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.396226  n/a   
 
 
-
 
NC_009441  Fjoh_0470  two component, sigma54 specific, Fis family transcriptional regulator  36.59 
 
 
449 aa  293  4e-78  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2606  two component, sigma54 specific, transcriptional regulator, Fis family  42.71 
 
 
501 aa  292  7e-78  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.955687 
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  38.19 
 
 
515 aa  292  8e-78  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  42.75 
 
 
451 aa  292  9e-78  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_002939  GSU1989  sigma-54 dependent DNA-binding response regulator  38.08 
 
 
444 aa  292  1e-77  Geobacter sulfurreducens PCA  Bacteria  normal  0.519588  n/a   
 
 
-
 
NC_013730  Slin_2347  two component, sigma54 specific, transcriptional regulator, Fis family  37.84 
 
 
456 aa  291  2e-77  Spirosoma linguale DSM 74  Bacteria  normal  0.229216  normal 
 
 
-
 
NC_013037  Dfer_4836  two component, sigma54 specific, transcriptional regulator, Fis family  36.8 
 
 
456 aa  291  2e-77  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0109  two component Fis family transcriptional regulator  38.81 
 
 
466 aa  291  2e-77  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3003  two component Fis family transcriptional regulator  38.46 
 
 
465 aa  291  2e-77  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0697126  n/a   
 
 
-
 
NC_011891  A2cp1_3623  two component, sigma54 specific, transcriptional regulator, Fis family  37.71 
 
 
489 aa  291  2e-77  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.568637  n/a   
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  37.84 
 
 
463 aa  291  2e-77  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3555  two component, sigma54 specific, transcriptional regulator, Fis family  37.71 
 
 
489 aa  291  2e-77  Anaeromyxobacter sp. K  Bacteria  normal  0.369206  n/a   
 
 
-
 
NC_009831  Ssed_1798  two component, sigma54 specific, Fis family transcriptional regulator  38 
 
 
450 aa  291  2e-77  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03753  fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein  37.29 
 
 
469 aa  290  3e-77  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  41.98 
 
 
451 aa  290  3e-77  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_013440  Hoch_5989  two component, sigma54 specific, transcriptional regulator, Fis family  36.48 
 
 
459 aa  290  3e-77  Haliangium ochraceum DSM 14365  Bacteria  normal  0.999422  normal 
 
 
-
 
NC_012892  B21_03702  hypothetical protein  37.29 
 
 
469 aa  290  3e-77  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3335  two component, sigma-54 specific, Fis family transcriptional regulator  36.25 
 
 
458 aa  290  3e-77  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3471  two component, sigma54 specific, Fis family transcriptional regulator  37.92 
 
 
489 aa  290  3e-77  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  43.51 
 
 
471 aa  290  4e-77  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  37.92 
 
 
456 aa  290  5.0000000000000004e-77  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  38.46 
 
 
454 aa  289  6e-77  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  42.24 
 
 
470 aa  289  6e-77  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_009832  Spro_4883  nitrogen regulation protein NR(I)  37.17 
 
 
470 aa  289  8e-77  Serratia proteamaculans 568  Bacteria  normal  0.177074  hitchhiker  0.0000322182 
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  38.38 
 
 
466 aa  289  8e-77  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  42.24 
 
 
473 aa  289  8e-77  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_012880  Dd703_3962  nitrogen regulation protein NR(I)  38.56 
 
 
470 aa  289  9e-77  Dickeya dadantii Ech703  Bacteria  normal  0.389706  n/a   
 
 
-
 
NC_010468  EcolC_4148  nitrogen regulation protein NR(I)  36.88 
 
 
469 aa  288  1e-76  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.221467 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  43.51 
 
 
471 aa  288  1e-76  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
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