More than 300 homologs were found in PanDaTox collection
for query gene Rsph17025_2941 on replicon NC_009428
Organism: Rhodobacter sphaeroides ATCC 17025



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009428  Rsph17025_2941  short-chain dehydrogenase/reductase SDR  100 
 
 
245 aa  497  1e-140  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.19024  normal  0.201158 
 
 
-
 
NC_007493  RSP_1087  short-chain dehydrogenase/reductase family protein  91.02 
 
 
245 aa  456  1e-127  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.3765  n/a   
 
 
-
 
NC_009049  Rsph17029_2750  short-chain dehydrogenase/reductase SDR  91.02 
 
 
245 aa  456  1e-127  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0379321  normal 
 
 
-
 
NC_009952  Dshi_0371  short-chain dehydrogenase/reductase SDR  57.44 
 
 
243 aa  295  5e-79  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_4017  short-chain dehydrogenase/reductase SDR  48.32 
 
 
245 aa  223  2e-57  Jannaschia sp. CCS1  Bacteria  normal  0.980517  normal 
 
 
-
 
NC_008044  TM1040_0408  short-chain dehydrogenase/reductase SDR  47.28 
 
 
240 aa  209  3e-53  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1974  short-chain dehydrogenase/reductase SDR  36.99 
 
 
258 aa  172  2.9999999999999996e-42  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2391  short-chain dehydrogenase/reductase SDR  37.05 
 
 
260 aa  172  2.9999999999999996e-42  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2964  short-chain dehydrogenase/reductase SDR  37.05 
 
 
260 aa  172  3.9999999999999995e-42  Acidovorax sp. JS42  Bacteria  normal  normal  0.166977 
 
 
-
 
NC_010002  Daci_5880  short-chain dehydrogenase/reductase SDR  36.93 
 
 
263 aa  171  1e-41  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.195504 
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  38.56 
 
 
249 aa  167  1e-40  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_007298  Daro_0496  Short-chain dehydrogenase/reductase SDR  38.52 
 
 
251 aa  163  2.0000000000000002e-39  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.661007 
 
 
-
 
NC_010524  Lcho_0468  short-chain dehydrogenase/reductase SDR  34.98 
 
 
257 aa  162  5.0000000000000005e-39  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008825  Mpe_A0230  hypothetical protein  36.29 
 
 
261 aa  159  3e-38  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.599536 
 
 
-
 
NC_008781  Pnap_1455  short-chain dehydrogenase/reductase SDR  34.15 
 
 
260 aa  154  8e-37  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.271159  normal 
 
 
-
 
NC_011662  Tmz1t_1059  short-chain dehydrogenase/reductase SDR  34.3 
 
 
300 aa  153  2e-36  Thauera sp. MZ1T  Bacteria  normal  0.261261  n/a   
 
 
-
 
NC_013422  Hneap_1889  short-chain dehydrogenase/reductase SDR  35.17 
 
 
256 aa  153  2.9999999999999998e-36  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6102  Short-chain dehydrogenase/reductase SDR  38.55 
 
 
264 aa  146  2.0000000000000003e-34  Ralstonia eutropha JMP134  Bacteria  normal  0.0605001  n/a   
 
 
-
 
NC_011369  Rleg2_1440  short-chain dehydrogenase/reductase SDR  32.55 
 
 
277 aa  142  4e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.313918 
 
 
-
 
NC_012850  Rleg_1619  short-chain dehydrogenase/reductase SDR  33.33 
 
 
277 aa  141  9e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.44916 
 
 
-
 
NC_009484  Acry_1727  short-chain dehydrogenase/reductase SDR  33.61 
 
 
265 aa  137  1e-31  Acidiphilium cryptum JF-5  Bacteria  normal  0.218017  n/a   
 
 
-
 
NC_007643  Rru_A0729  Short-chain dehydrogenase/reductase SDR  33.74 
 
 
259 aa  135  6.0000000000000005e-31  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.503076  n/a   
 
 
-
 
NC_010501  PputW619_3172  short-chain dehydrogenase/reductase SDR  35.06 
 
 
250 aa  132  5e-30  Pseudomonas putida W619  Bacteria  normal  0.0471693  normal 
 
 
-
 
NC_007005  Psyr_0959  Short-chain dehydrogenase/reductase SDR  35.42 
 
 
262 aa  131  1.0000000000000001e-29  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0463  short-chain dehydrogenase/reductase SDR  36.18 
 
 
264 aa  129  3e-29  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0085  gluconate 5-dehydrogenase  34.42 
 
 
256 aa  129  5.0000000000000004e-29  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4738  Short-chain dehydrogenase/reductase SDR  35.5 
 
 
260 aa  127  2.0000000000000002e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.9226  normal  0.284155 
 
 
-
 
NC_002947  PP_2737  short chain dehydrogenase/reductase family oxidoreductase  36.64 
 
 
250 aa  124  2e-27  Pseudomonas putida KT2440  Bacteria  normal  0.420132  normal 
 
 
-
 
NC_002976  SERP2049  short chain dehydrogenase/reductase family oxidoreductase  36.22 
 
 
230 aa  122  6e-27  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2099  short-chain dehydrogenase/reductase SDR  35.34 
 
 
250 aa  120  1.9999999999999998e-26  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3016  short-chain dehydrogenase/reductase SDR  35.78 
 
 
250 aa  120  1.9999999999999998e-26  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1484  short-chain dehydrogenase/reductase SDR  31.38 
 
 
260 aa  117  1.9999999999999998e-25  Marinobacter aquaeolei VT8  Bacteria  normal  0.591298  n/a   
 
 
-
 
NC_012917  PC1_2097  short-chain dehydrogenase/reductase SDR  35.22 
 
 
238 aa  116  3e-25  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.434652  n/a   
 
 
-
 
NC_009439  Pmen_1069  short-chain dehydrogenase/reductase SDR  34.71 
 
 
251 aa  115  5e-25  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_1362  short-chain dehydrogenase/reductase SDR  29.05 
 
 
282 aa  115  7.999999999999999e-25  Sinorhizobium medicae WSM419  Bacteria  normal  0.390824  normal 
 
 
-
 
NC_011138  MADE_01434  Short chain dehydrogenase family protein  34.89 
 
 
239 aa  114  1.0000000000000001e-24  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1222  short-chain dehydrogenase/reductase SDR  30.83 
 
 
258 aa  114  2.0000000000000002e-24  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.461582  normal 
 
 
-
 
NC_004578  PSPTO_1119  oxidoreductase, short chain dehydrogenase/reductase family  35 
 
 
262 aa  113  3e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4073  short-chain dehydrogenase/reductase SDR  32.27 
 
 
252 aa  112  6e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.576341  normal 
 
 
-
 
NC_009767  Rcas_3908  short-chain dehydrogenase/reductase SDR  34.55 
 
 
272 aa  111  1.0000000000000001e-23  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.106718  normal  0.186536 
 
 
-
 
NC_009436  Ent638_1490  short-chain dehydrogenase/reductase SDR  34.91 
 
 
239 aa  111  1.0000000000000001e-23  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_3599  short-chain dehydrogenase/reductase SDR  33.68 
 
 
256 aa  109  4.0000000000000004e-23  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1352  short-chain dehydrogenase/reductase SDR  33.07 
 
 
272 aa  108  9.000000000000001e-23  Roseiflexus sp. RS-1  Bacteria  normal  0.15703  normal 
 
 
-
 
NC_011666  Msil_0375  short-chain dehydrogenase/reductase SDR  31.39 
 
 
254 aa  108  1e-22  Methylocella silvestris BL2  Bacteria  n/a    normal  0.187579 
 
 
-
 
NC_007912  Sde_2469  TonB-dependent receptor  31.62 
 
 
265 aa  108  1e-22  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4895  short chain dehydrogenase  34.44 
 
 
258 aa  107  2e-22  Polaromonas sp. JS666  Bacteria  hitchhiker  0.000739396  normal 
 
 
-
 
NC_009783  VIBHAR_01815  short chain dehydrogenase  32.2 
 
 
241 aa  106  3e-22  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008782  Ajs_4129  short chain dehydrogenase  33.33 
 
 
270 aa  106  3e-22  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3487  short chain dehydrogenase  33.33 
 
 
270 aa  106  4e-22  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003864  oxidoreductase short-chain dehydrogenase/reductase family  30.93 
 
 
241 aa  106  4e-22  Vibrio sp. Ex25  Bacteria  normal  0.013707  n/a   
 
 
-
 
NC_010506  Swoo_2775  short-chain dehydrogenase/reductase SDR  32.33 
 
 
238 aa  105  5e-22  Shewanella woodyi ATCC 51908  Bacteria  normal  0.88847  normal  0.739494 
 
 
-
 
NC_007643  Rru_A0427  Short-chain dehydrogenase/reductase SDR  32.92 
 
 
256 aa  105  5e-22  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1000  short-chain dehydrogenase/reductase SDR  29.91 
 
 
240 aa  105  6e-22  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_2810  short-chain dehydrogenase/reductase SDR  36.87 
 
 
284 aa  105  8e-22  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.329601  normal 
 
 
-
 
NC_008228  Patl_1329  short-chain dehydrogenase/reductase SDR  30.74 
 
 
238 aa  105  9e-22  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.371699  n/a   
 
 
-
 
NC_013946  Mrub_1322  short-chain dehydrogenase/reductase SDR  38.42 
 
 
249 aa  104  1e-21  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.293946 
 
 
-
 
NC_007413  Ava_2888  Short-chain dehydrogenase/reductase SDR  31.94 
 
 
257 aa  103  3e-21  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0119499 
 
 
-
 
NC_007614  Nmul_A2453  short chain dehydrogenase  33.47 
 
 
261 aa  103  3e-21  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1650  short-chain dehydrogenase/reductase SDR  35.08 
 
 
254 aa  102  4e-21  Cyanothece sp. PCC 7425  Bacteria  normal  0.206138  normal 
 
 
-
 
NC_008686  Pden_1769  3-oxoacyl-(acyl-carrier-protein) reductase  36.04 
 
 
245 aa  102  5e-21  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.485655 
 
 
-
 
NC_010681  Bphyt_2637  short chain dehydrogenase  39.38 
 
 
249 aa  102  8e-21  Burkholderia phytofirmans PsJN  Bacteria  normal  0.880192  normal  0.691513 
 
 
-
 
NC_008700  Sama_0813  short chain dehydrogenase/reductase family oxidoreductase  33.19 
 
 
253 aa  102  8e-21  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5919  short-chain dehydrogenase/reductase SDR  31.71 
 
 
295 aa  101  9e-21  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1481  short-chain dehydrogenase/reductase SDR  31.9 
 
 
240 aa  100  1e-20  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_1374  short-chain dehydrogenase/reductase SDR  35.11 
 
 
253 aa  100  1e-20  Desulfovibrio vulgaris DP4  Bacteria  normal  0.542817  normal  0.89387 
 
 
-
 
NC_007355  Mbar_A2512  3-oxoacyl-(acyl-carrier protein) reductase  31.13 
 
 
236 aa  100  2e-20  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0588198  normal  0.237046 
 
 
-
 
NC_007575  Suden_1903  Short-chain dehydrogenase/reductase SDR  27.35 
 
 
242 aa  100  3e-20  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1950  putative short-chain dehydrogenase/reductase SDR  35.2 
 
 
284 aa  100  3e-20  Burkholderia xenovorans LB400  Bacteria  normal  0.417893  normal  0.0791039 
 
 
-
 
NC_007954  Sden_3371  short-chain dehydrogenase/reductase SDR  29.79 
 
 
239 aa  99.8  3e-20  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1109  short-chain dehydrogenase/reductase SDR  36.71 
 
 
254 aa  100  3e-20  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.00727999  normal  0.180483 
 
 
-
 
NC_007969  Pcryo_0727  short-chain dehydrogenase/reductase SDR  29.8 
 
 
245 aa  99.8  4e-20  Psychrobacter cryohalolentis K5  Bacteria  decreased coverage  0.00978147  normal 
 
 
-
 
NC_010581  Bind_0286  short-chain dehydrogenase/reductase SDR  31.67 
 
 
267 aa  99.4  5e-20  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1872  3-oxoacyl-(acyl-carrier-protein) reductase  34.78 
 
 
241 aa  99  6e-20  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.105262 
 
 
-
 
NC_008752  Aave_4782  short chain dehydrogenase  33.2 
 
 
264 aa  99  6e-20  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2139  short chain dehydrogenase  37.99 
 
 
284 aa  99  6e-20  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.980351 
 
 
-
 
NC_008541  Arth_3310  short-chain dehydrogenase/reductase SDR  34.54 
 
 
276 aa  98.6  7e-20  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1841  short chain dehydrogenase/reductase family oxidoreductase  32.97 
 
 
250 aa  97.8  1e-19  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00165114  n/a   
 
 
-
 
NC_009077  Mjls_5682  short-chain dehydrogenase/reductase SDR  35.84 
 
 
239 aa  97.8  1e-19  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5549  short-chain dehydrogenase/reductase SDR  32.95 
 
 
269 aa  97.8  1e-19  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A4244  oxidoreductase, short-chain dehydrogenase/reductase family  29.08 
 
 
264 aa  98.2  1e-19  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0992  oxidoreductase, short-chain dehydrogenase/reductase family  29.08 
 
 
264 aa  98.2  1e-19  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1238  short-chain dehydrogenase/reductase SDR  29.22 
 
 
266 aa  98.2  1e-19  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A3806  short chain dehydrogenase  33.47 
 
 
260 aa  98.2  1e-19  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.187681 
 
 
-
 
NC_009076  BURPS1106A_0427  short chain dehydrogenase  30.86 
 
 
259 aa  97.8  2e-19  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0087  short chain dehydrogenase  30.45 
 
 
259 aa  97.1  2e-19  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0589  short chain dehydrogenase  30.45 
 
 
259 aa  97.1  2e-19  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3096  short chain dehydrogenase  30.45 
 
 
259 aa  97.1  2e-19  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2288  short chain dehydrogenase  30.45 
 
 
259 aa  97.1  2e-19  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0407  short chain dehydrogenase  30.45 
 
 
259 aa  97.1  2e-19  Burkholderia pseudomallei 668  Bacteria  normal  0.317505  n/a   
 
 
-
 
NC_008146  Mmcs_5303  short-chain dehydrogenase/reductase SDR  35.84 
 
 
244 aa  97.4  2e-19  Mycobacterium sp. MCS  Bacteria  normal  0.0663055  n/a   
 
 
-
 
NC_008836  BMA10229_A2000  short chain dehydrogenase  30.45 
 
 
259 aa  97.1  2e-19  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5392  short-chain dehydrogenase/reductase SDR  35.84 
 
 
244 aa  97.4  2e-19  Mycobacterium sp. KMS  Bacteria  normal  0.932372  normal  0.125579 
 
 
-
 
NC_011658  BCAH187_A4268  oxidoreductase, short-chain dehydrogenase/reductase family  29.48 
 
 
264 aa  96.7  3e-19  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4205  short chain dehydrogenase/reductase family oxidoreductase  29.48 
 
 
264 aa  96.7  3e-19  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS4042  short chain dehydrogenase/reductase family oxidoreductase  29.48 
 
 
264 aa  96.7  3e-19  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2555  short-chain dehydrogenase/reductase SDR  30.89 
 
 
231 aa  96.7  3e-19  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.459049  n/a   
 
 
-
 
NC_007530  GBAA_4357  short chain dehydrogenase/reductase family oxidoreductase  29.48 
 
 
264 aa  96.7  3e-19  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_2096  short-chain dehydrogenase/reductase SDR  35.05 
 
 
276 aa  96.7  3e-19  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_32520  Short-chain dehydrogenase/reductase SDR protein  35.2 
 
 
278 aa  97.1  3e-19  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1167  short-chain dehydrogenase/reductase SDR  30.04 
 
 
266 aa  96.7  3e-19  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
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