More than 300 homologs were found in PanDaTox collection
for query gene Rru_A3748 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A3748  GTP-dependent nucleic acid-binding protein EngD  100 
 
 
367 aa  741  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1389  GTP-dependent nucleic acid-binding protein EngD  74.39 
 
 
366 aa  557  1e-157  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.159782 
 
 
-
 
NC_007406  Nwi_2510  GTP-dependent nucleic acid-binding protein EngD  73.02 
 
 
365 aa  535  1e-151  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.566797  normal  0.501348 
 
 
-
 
NC_007964  Nham_3101  GTP-dependent nucleic acid-binding protein EngD  72.48 
 
 
365 aa  532  1e-150  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1676  GTP-dependent nucleic acid-binding protein EngD  74.11 
 
 
364 aa  528  1e-149  Acidiphilium cryptum JF-5  Bacteria  normal  0.0252475  n/a   
 
 
-
 
NC_007794  Saro_2121  GTP-dependent nucleic acid-binding protein EngD  71.12 
 
 
366 aa  529  1e-149  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.328757  n/a   
 
 
-
 
NC_007958  RPD_3999  GTP-dependent nucleic acid-binding protein EngD  71.04 
 
 
365 aa  526  1e-148  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4838  GTP-dependent nucleic acid-binding protein EngD  71.58 
 
 
365 aa  527  1e-148  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4159  GTP-dependent nucleic acid-binding protein EngD  70.77 
 
 
365 aa  523  1e-147  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.471291  normal  0.369246 
 
 
-
 
NC_008254  Meso_2159  GTP-dependent nucleic acid-binding protein EngD  69.57 
 
 
367 aa  520  1e-146  Chelativorans sp. BNC1  Bacteria  normal  0.470887  n/a   
 
 
-
 
NC_007925  RPC_1417  GTP-dependent nucleic acid-binding protein EngD  70.22 
 
 
365 aa  514  1e-145  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.685552 
 
 
-
 
NC_009636  Smed_2266  GTP-dependent nucleic acid-binding protein EngD  69.29 
 
 
367 aa  515  1e-145  Sinorhizobium medicae WSM419  Bacteria  normal  0.83049  normal  0.983976 
 
 
-
 
NC_009485  BBta_1769  GTP-dependent nucleic acid-binding protein EngD  72.13 
 
 
365 aa  509  1e-143  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0224  GTP-dependent nucleic acid-binding protein EngD  69.67 
 
 
365 aa  509  1e-143  Ruegeria sp. TM1040  Bacteria  normal  0.626495  normal 
 
 
-
 
NC_012850  Rleg_3035  GTP-dependent nucleic acid-binding protein EngD  68.94 
 
 
367 aa  509  1e-143  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2394  GTP-dependent nucleic acid-binding protein EngD  73.15 
 
 
365 aa  510  1e-143  Methylobacterium sp. 4-46  Bacteria  normal  0.207486  decreased coverage  0.00637263 
 
 
-
 
NC_009952  Dshi_0954  GTP-dependent nucleic acid-binding protein EngD  70.3 
 
 
365 aa  509  1e-143  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2771  GTP-dependent nucleic acid-binding protein EngD  68.66 
 
 
367 aa  507  1e-142  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2255  GTP-binding protein YchF  68.75 
 
 
369 aa  504  1e-142  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.416023  normal  0.725839 
 
 
-
 
NC_010172  Mext_2473  GTP-dependent nucleic acid-binding protein EngD  71.23 
 
 
365 aa  505  1e-142  Methylobacterium extorquens PA1  Bacteria  normal  0.104897  normal 
 
 
-
 
NC_011989  Avi_3194  GTP-dependent nucleic acid-binding protein EngD  68.39 
 
 
367 aa  502  1e-141  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0832  GTP-dependent nucleic acid-binding protein EngD  69.4 
 
 
365 aa  503  1e-141  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.596144  n/a   
 
 
-
 
NC_010725  Mpop_2401  GTP-dependent nucleic acid-binding protein EngD  70.68 
 
 
365 aa  501  1e-141  Methylobacterium populi BJ001  Bacteria  normal  0.819289  normal 
 
 
-
 
NC_009049  Rsph17029_2490  GTP-dependent nucleic acid-binding protein EngD  69.13 
 
 
365 aa  502  1e-141  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.071382  normal 
 
 
-
 
NC_011757  Mchl_2696  GTP-dependent nucleic acid-binding protein EngD  70.68 
 
 
365 aa  502  1e-141  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR1537  GTP-dependent nucleic acid-binding protein EngD  67.57 
 
 
367 aa  498  1e-140  Brucella suis 1330  Bacteria  normal  0.0679708  n/a   
 
 
-
 
NC_011365  Gdia_1085  GTP-dependent nucleic acid-binding protein EngD  71.12 
 
 
364 aa  498  1e-140  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_1486  GTP-dependent nucleic acid-binding protein EngD  67.57 
 
 
367 aa  498  1e-140  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0348  GTP-dependent nucleic acid-binding protein EngD  69.95 
 
 
365 aa  497  1e-139  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.079313  normal 
 
 
-
 
NC_009720  Xaut_2605  GTP-dependent nucleic acid-binding protein EngD  70.68 
 
 
395 aa  494  1e-139  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.717078 
 
 
-
 
NC_008686  Pden_0334  GTP-dependent nucleic acid-binding protein EngD  68.58 
 
 
365 aa  496  1e-139  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.246253 
 
 
-
 
NC_008048  Sala_1621  GTP-dependent nucleic acid-binding protein EngD  70.52 
 
 
365 aa  493  1e-138  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.340405 
 
 
-
 
NC_009667  Oant_1629  GTP-dependent nucleic acid-binding protein EngD  67.66 
 
 
367 aa  493  1e-138  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.866476  n/a   
 
 
-
 
NC_010505  Mrad2831_4124  GTP-dependent nucleic acid-binding protein EngD  70.14 
 
 
365 aa  494  1e-138  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2817  GTP-dependent nucleic acid-binding protein EngD  72.33 
 
 
365 aa  494  1e-138  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0746307  n/a   
 
 
-
 
NC_008783  BARBAKC583_1002  GTP-dependent nucleic acid-binding protein EngD  64.5 
 
 
367 aa  490  1e-137  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3582  GTP-dependent nucleic acid-binding protein EngD  67.77 
 
 
365 aa  484  1e-136  Jannaschia sp. CCS1  Bacteria  normal  0.216393  normal 
 
 
-
 
NC_011666  Msil_1630  GTP-dependent nucleic acid-binding protein EngD  71.23 
 
 
365 aa  485  1e-136  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00770897 
 
 
-
 
NC_008347  Mmar10_0755  GTP-dependent nucleic acid-binding protein EngD  68.48 
 
 
365 aa  473  1e-132  Maricaulis maris MCS10  Bacteria  normal  normal  0.50499 
 
 
-
 
NC_010581  Bind_0170  GTP-dependent nucleic acid-binding protein EngD  70.68 
 
 
365 aa  474  1e-132  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.0709046  normal 
 
 
-
 
NC_010338  Caul_0708  GTP-dependent nucleic acid-binding protein EngD  64.67 
 
 
366 aa  468  1e-131  Caulobacter sp. K31  Bacteria  normal  0.965008  normal 
 
 
-
 
NC_007498  Pcar_2000  GTP-dependent nucleic acid-binding protein EngD  61.85 
 
 
364 aa  451  1e-126  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0365484  n/a   
 
 
-
 
NC_002978  WD0442  GTP-dependent nucleic acid-binding protein EngD  57.49 
 
 
364 aa  442  1e-123  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  0.392269  n/a   
 
 
-
 
NC_002950  PG0048  GTP-dependent nucleic acid-binding protein EngD  58.7 
 
 
367 aa  443  1e-123  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013501  Rmar_0027  GTP-binding protein YchF  62.06 
 
 
366 aa  438  1e-122  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2845  GTP-dependent nucleic acid-binding protein EngD  61.58 
 
 
364 aa  435  1e-121  Geobacter metallireducens GS-15  Bacteria  hitchhiker  1.49199e-06  hitchhiker  2.11408e-13 
 
 
-
 
NC_007947  Mfla_0675  GTP-dependent nucleic acid-binding protein EngD  62.47 
 
 
361 aa  436  1e-121  Methylobacillus flagellatus KT  Bacteria  normal  0.762559  normal 
 
 
-
 
NC_009012  Cthe_0877  GTP-dependent nucleic acid-binding protein EngD  59.95 
 
 
364 aa  432  1e-120  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  7.173e-05  n/a   
 
 
-
 
NC_002939  GSU0664  GTP-dependent nucleic acid-binding protein EngD  61.58 
 
 
364 aa  432  1e-120  Geobacter sulfurreducens PCA  Bacteria  normal  0.151468  n/a   
 
 
-
 
NC_012918  GM21_1475  GTP-dependent nucleic acid-binding protein EngD  58.86 
 
 
364 aa  429  1e-119  Geobacter sp. M21  Bacteria  n/a    normal  0.0116591 
 
 
-
 
NC_013162  Coch_0099  GTP-dependent nucleic acid-binding protein EngD  58.08 
 
 
363 aa  430  1e-119  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.76867  n/a   
 
 
-
 
NC_011146  Gbem_2765  GTP-dependent nucleic acid-binding protein EngD  58.58 
 
 
364 aa  428  1e-119  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0530  GTP-dependent nucleic acid-binding protein EngD  60.76 
 
 
363 aa  428  1e-119  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0503  GTP-dependent nucleic acid-binding protein EngD  59.95 
 
 
363 aa  425  1e-118  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2423  GTP-dependent nucleic acid-binding protein EngD  59.13 
 
 
363 aa  425  1e-118  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0847638 
 
 
-
 
NC_009800  EcHS_A1308  GTP-dependent nucleic acid-binding protein EngD  59.13 
 
 
363 aa  425  1e-118  Escherichia coli HS  Bacteria  normal  0.253077  n/a   
 
 
-
 
CP001509  ECD_01178  translation-associated GTPase  59.13 
 
 
363 aa  425  1e-118  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1350  GTP-dependent nucleic acid-binding protein EngD  59.13 
 
 
363 aa  425  1e-118  Escherichia coli E24377A  Bacteria  normal  0.0630481  n/a   
 
 
-
 
NC_010498  EcSMS35_1939  GTP-dependent nucleic acid-binding protein EngD  59.13 
 
 
363 aa  425  1e-118  Escherichia coli SMS-3-5  Bacteria  normal  0.256808  normal  0.0918473 
 
 
-
 
NC_012892  B21_01188  hypothetical protein  59.13 
 
 
363 aa  425  1e-118  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_3090  GTP-dependent nucleic acid-binding protein EngD  60.55 
 
 
363 aa  427  1e-118  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011353  ECH74115_1684  GTP-dependent nucleic acid-binding protein EngD  59.13 
 
 
363 aa  425  1e-118  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000467912  normal  0.464774 
 
 
-
 
NC_013161  Cyan8802_3030  GTP-dependent nucleic acid-binding protein EngD  60.55 
 
 
363 aa  427  1e-118  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_2444  GTP-binding protein YchF  59.13 
 
 
363 aa  425  1e-118  Escherichia coli DH1  Bacteria  normal  0.0781916  n/a   
 
 
-
 
NC_011884  Cyan7425_4263  GTP-dependent nucleic acid-binding protein EngD  60.27 
 
 
363 aa  426  1e-118  Cyanothece sp. PCC 7425  Bacteria  normal  0.109438  normal  0.19312 
 
 
-
 
NC_007604  Synpcc7942_0554  GTP-dependent nucleic acid-binding protein EngD  61.1 
 
 
363 aa  427  1e-118  Synechococcus elongatus PCC 7942  Bacteria  normal  0.268556  normal 
 
 
-
 
NC_010658  SbBS512_E1367  GTP-dependent nucleic acid-binding protein EngD  59.13 
 
 
363 aa  425  1e-118  Shigella boydii CDC 3083-94  Bacteria  normal  0.37474  n/a   
 
 
-
 
NC_012912  Dd1591_2063  GTP-dependent nucleic acid-binding protein EngD  58.86 
 
 
363 aa  422  1e-117  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5323  GTP-dependent nucleic acid-binding protein EngD  60.05 
 
 
366 aa  424  1e-117  Pseudomonas aeruginosa PA7  Bacteria  normal  0.207284  n/a   
 
 
-
 
NC_012560  Avin_41550  GTP-dependent nucleic acid-binding protein EngD  58.7 
 
 
366 aa  424  1e-117  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0753  GTP-dependent nucleic acid-binding protein EngD  59.51 
 
 
366 aa  421  1e-117  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_0517  GTP-dependent nucleic acid-binding protein EngD  61.04 
 
 
362 aa  423  1e-117  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4756  GTP-dependent nucleic acid-binding protein EngD  58.42 
 
 
366 aa  422  1e-117  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.586629  normal  0.439463 
 
 
-
 
NC_008576  Mmc1_0823  GTP-binding protein YchF  58.33 
 
 
369 aa  424  1e-117  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.80837 
 
 
-
 
NC_009439  Pmen_1052  GTP-dependent nucleic acid-binding protein EngD  58.54 
 
 
366 aa  422  1e-117  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.133345 
 
 
-
 
NC_013889  TK90_0348  GTP-binding protein YchF  60.76 
 
 
364 aa  424  1e-117  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.214484 
 
 
-
 
NC_008463  PA14_61820  GTP-dependent nucleic acid-binding protein EngD  59.78 
 
 
366 aa  423  1e-117  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  4.90412e-05  hitchhiker  0.00796401 
 
 
-
 
NC_013037  Dfer_4776  GTP-dependent nucleic acid-binding protein EngD  56.95 
 
 
366 aa  419  1e-116  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.117268  hitchhiker  0.000704522 
 
 
-
 
NC_002947  PP_0719  GTP-dependent nucleic acid-binding protein EngD  59.24 
 
 
366 aa  420  1e-116  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2368  GTP-dependent nucleic acid-binding protein EngD  59.13 
 
 
363 aa  419  1e-116  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1320  GTP-binding protein YchF  56.68 
 
 
364 aa  420  1e-116  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_0894  GTP-dependent nucleic acid-binding protein EngD  58.04 
 
 
363 aa  419  1e-116  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.943704 
 
 
-
 
NC_011071  Smal_0729  GTP-dependent nucleic acid-binding protein EngD  60.49 
 
 
363 aa  418  1e-116  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.195825 
 
 
-
 
NC_010814  Glov_2592  GTP-dependent nucleic acid-binding protein EngD  59.13 
 
 
364 aa  419  1e-116  Geobacter lovleyi SZ  Bacteria  hitchhiker  1.45967e-05  n/a   
 
 
-
 
NC_010322  PputGB1_0763  GTP-dependent nucleic acid-binding protein EngD  59.24 
 
 
366 aa  420  1e-116  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0231  GTP-dependent nucleic acid-binding protein EngD  58.63 
 
 
363 aa  418  1e-116  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.375519 
 
 
-
 
NC_009441  Fjoh_2467  GTP-dependent nucleic acid-binding protein EngD  55.89 
 
 
364 aa  418  1e-116  Flavobacterium johnsoniae UW101  Bacteria  normal  0.293996  n/a   
 
 
-
 
NC_008577  Shewana3_1012  GTP-dependent nucleic acid-binding protein EngD  60.76 
 
 
363 aa  417  1e-115  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00042531  normal  0.0638456 
 
 
-
 
NC_011059  Paes_1796  GTP-dependent nucleic acid-binding protein EngD  58.86 
 
 
363 aa  417  1e-115  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0100064  normal  0.0470054 
 
 
-
 
NC_010501  PputW619_4464  GTP-dependent nucleic acid-binding protein EngD  58.7 
 
 
366 aa  416  1e-115  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A1917  GTP-dependent nucleic acid-binding protein EngD  58.04 
 
 
363 aa  417  1e-115  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.188872  normal 
 
 
-
 
NC_013730  Slin_4281  GTP-binding protein YchF  56.47 
 
 
366 aa  417  1e-115  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_1982  GTP-dependent nucleic acid-binding protein EngD  59.4 
 
 
363 aa  415  1e-115  Serratia proteamaculans 568  Bacteria  normal  normal  0.0132051 
 
 
-
 
NC_011083  SeHA_C1981  GTP-dependent nucleic acid-binding protein EngD  58.04 
 
 
363 aa  417  1e-115  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.262835  normal 
 
 
-
 
NC_011094  SeSA_A1923  GTP-dependent nucleic acid-binding protein EngD  58.04 
 
 
363 aa  417  1e-115  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B1353  GTP-dependent nucleic acid-binding protein EngD  58.04 
 
 
363 aa  417  1e-115  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0280261  n/a   
 
 
-
 
NC_011205  SeD_A1537  GTP-dependent nucleic acid-binding protein EngD  58.04 
 
 
363 aa  417  1e-115  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.0518912 
 
 
-
 
NC_012880  Dd703_1849  GTP-dependent nucleic acid-binding protein EngD  59.4 
 
 
363 aa  418  1e-115  Dickeya dadantii Ech703  Bacteria  normal  0.476561  n/a   
 
 
-
 
NC_014248  Aazo_3794  GTP-binding protein YchF  58.08 
 
 
363 aa  417  1e-115  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1073  GTP-dependent nucleic acid-binding protein EngD  60.76 
 
 
363 aa  417  1e-115  Shewanella sp. MR-7  Bacteria  unclonable  5.96539e-06  normal  0.137935 
 
 
-
 
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