More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_2984 on replicon NC_012856
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012856  Rpic12D_2984  binding-protein-dependent transport systems inner membrane component  100 
 
 
276 aa  560  1.0000000000000001e-159  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3331  binding-protein-dependent transport systems inner membrane component  98.56 
 
 
277 aa  551  1e-156  Ralstonia pickettii 12J  Bacteria  normal  normal  0.619722 
 
 
-
 
NC_003295  RSc3049  transmembrane ABC transporter protein  96.74 
 
 
276 aa  546  1e-154  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0698875 
 
 
-
 
NC_010623  Bphy_5370  binding-protein-dependent transport systems inner membrane component  84.01 
 
 
270 aa  474  1e-133  Burkholderia phymatum STM815  Bacteria  normal  normal  0.593461 
 
 
-
 
NC_010676  Bphyt_6726  binding-protein-dependent transport systems inner membrane component  85.88 
 
 
269 aa  473  1e-132  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1028  binding-protein-dependent transport systems inner membrane component  80.37 
 
 
271 aa  450  1e-125  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3673  binding-protein-dependent transport systems inner membrane component  82.44 
 
 
270 aa  446  1.0000000000000001e-124  Rhodoferax ferrireducens T118  Bacteria  normal  0.0159617  n/a   
 
 
-
 
NC_007948  Bpro_0481  binding-protein-dependent transport systems inner membrane component  81.75 
 
 
270 aa  446  1.0000000000000001e-124  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00885853  normal 
 
 
-
 
NC_011992  Dtpsy_0379  binding-protein-dependent transport systems inner membrane component  80.3 
 
 
270 aa  447  1.0000000000000001e-124  Acidovorax ebreus TPSY  Bacteria  hitchhiker  0.000739004  n/a   
 
 
-
 
NC_008752  Aave_0607  binding-protein-dependent transport systems inner membrane component  79.93 
 
 
270 aa  444  1.0000000000000001e-124  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0387  binding-protein-dependent transport systems inner membrane component  80.3 
 
 
270 aa  446  1.0000000000000001e-124  Acidovorax sp. JS42  Bacteria  normal  0.579392  normal 
 
 
-
 
NC_007347  Reut_A2206  binding-protein dependent transport system inner membrane protein  80.53 
 
 
273 aa  441  1e-123  Ralstonia eutropha JMP134  Bacteria  normal  0.91702  n/a   
 
 
-
 
NC_007973  Rmet_2231  binding-protein-dependent transport systems inner membrane component  79.77 
 
 
276 aa  439  9.999999999999999e-123  Cupriavidus metallidurans CH34  Bacteria  normal  0.0964612  normal  0.170787 
 
 
-
 
NC_008786  Veis_2319  binding-protein-dependent transport systems inner membrane component  78.44 
 
 
270 aa  438  9.999999999999999e-123  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.170215  normal  0.495822 
 
 
-
 
NC_012791  Vapar_3393  binding-protein-dependent transport systems inner membrane component  80.81 
 
 
270 aa  434  1e-121  Variovorax paradoxus S110  Bacteria  normal  0.0838291  n/a   
 
 
-
 
NC_007492  Pfl01_3632  binding-protein dependent transport system inner membrane protein  76.4 
 
 
266 aa  431  1e-120  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.469815 
 
 
-
 
NC_008709  Ping_3171  ABC sugar (glycerol) transporter binding protein inner membrane protein  77.48 
 
 
266 aa  431  1e-120  Psychromonas ingrahamii 37  Bacteria  normal  0.550599  normal 
 
 
-
 
NC_009439  Pmen_2045  binding-protein-dependent transport systems inner membrane component  76.52 
 
 
266 aa  433  1e-120  Pseudomonas mendocina ymp  Bacteria  normal  0.0321729  normal  0.632864 
 
 
-
 
NC_008687  Pden_4389  binding-protein-dependent transport systems inner membrane component  75.66 
 
 
267 aa  429  1e-119  Paracoccus denitrificans PD1222  Bacteria  normal  0.998448  normal  0.127678 
 
 
-
 
NC_002947  PP_2263  binding-protein-dependent transport systems inner membrane component  79.12 
 
 
266 aa  426  1e-118  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.000192828 
 
 
-
 
NC_004578  PSPTO_3737  ABC transporter, permease protein  75.85 
 
 
266 aa  426  1e-118  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.103253  n/a   
 
 
-
 
NC_009428  Rsph17025_1204  binding-protein-dependent transport systems inner membrane component  74.44 
 
 
267 aa  427  1e-118  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.286919  normal  0.719506 
 
 
-
 
NC_007005  Psyr_1740  binding-protein dependent transport system inner membrane protein  75.85 
 
 
266 aa  427  1e-118  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.139142  normal  0.986821 
 
 
-
 
NC_010501  PputW619_1736  binding-protein-dependent transport systems inner membrane component  78.71 
 
 
266 aa  424  1e-118  Pseudomonas putida W619  Bacteria  normal  0.78404  normal  0.23922 
 
 
-
 
NC_007802  Jann_4101  binding-protein-dependent transport systems inner membrane component  73.06 
 
 
274 aa  424  1e-118  Jannaschia sp. CCS1  Bacteria  normal  0.612527  normal  0.65761 
 
 
-
 
NC_009512  Pput_3475  binding-protein-dependent transport systems inner membrane component  79.12 
 
 
266 aa  426  1e-118  Pseudomonas putida F1  Bacteria  normal  0.926994  hitchhiker  0.00696056 
 
 
-
 
NC_009636  Smed_2907  binding-protein-dependent transport systems inner membrane component  76.95 
 
 
274 aa  421  1e-117  Sinorhizobium medicae WSM419  Bacteria  normal  0.395793  normal 
 
 
-
 
NC_007493  RSP_2665  ABC sugar (glycerol) transporter, inner membrane subunit  74.06 
 
 
267 aa  423  1e-117  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1896  binding-protein-dependent transport systems inner membrane component  78.31 
 
 
266 aa  421  1e-117  Pseudomonas putida GB-1  Bacteria  normal  normal  0.141997 
 
 
-
 
NC_009654  Mmwyl1_0377  binding-protein-dependent transport systems inner membrane component  79.03 
 
 
297 aa  422  1e-117  Marinomonas sp. MWYL1  Bacteria  normal  0.135278  normal  0.390253 
 
 
-
 
NC_009049  Rsph17029_1323  binding-protein-dependent transport systems inner membrane component  73.31 
 
 
267 aa  421  1e-117  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1971  binding-protein-dependent transport systems inner membrane component  75.29 
 
 
265 aa  418  1e-116  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2420  binding-protein-dependent transport systems inner membrane component  74.43 
 
 
265 aa  417  1e-116  Ruegeria sp. TM1040  Bacteria  normal  0.0828687  normal  0.714962 
 
 
-
 
NC_009668  Oant_3980  binding-protein-dependent transport systems inner membrane component  76.17 
 
 
296 aa  418  1e-116  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.780875  n/a   
 
 
-
 
NC_013440  Hoch_5934  binding-protein-dependent transport systems inner membrane component  78.23 
 
 
272 aa  412  1e-114  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0836514  normal 
 
 
-
 
NC_009952  Dshi_3131  sugar ABC transporter  73.28 
 
 
265 aa  407  1.0000000000000001e-112  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.471841  normal 
 
 
-
 
NC_007778  RPB_4213  binding-protein-dependent transport systems inner membrane component  73.38 
 
 
268 aa  407  1.0000000000000001e-112  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_007958  RPD_4065  binding-protein-dependent transport systems inner membrane component  73.38 
 
 
268 aa  406  1.0000000000000001e-112  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.641778 
 
 
-
 
NC_011004  Rpal_4891  binding-protein-dependent transport systems inner membrane component  73 
 
 
268 aa  405  1.0000000000000001e-112  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2225  putative sugar ABC transport system, permease component  72.62 
 
 
268 aa  403  1e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.279383  normal  0.0771654 
 
 
-
 
NC_011989  Avi_0098  ABC transporter membrane spanning protein (sugar)  77.59 
 
 
241 aa  395  1e-109  Agrobacterium vitis S4  Bacteria  normal  0.152339  n/a   
 
 
-
 
NC_007925  RPC_1365  binding-protein-dependent transport systems inner membrane component  75 
 
 
275 aa  394  1e-108  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.374311  normal 
 
 
-
 
NC_013173  Dbac_1443  binding-protein-dependent transport systems inner membrane component  74.05 
 
 
265 aa  394  1e-108  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0301431  n/a   
 
 
-
 
NC_008254  Meso_1595  binding-protein-dependent transport systems inner membrane component  78.91 
 
 
272 aa  390  1e-108  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011371  Rleg2_6466  binding-protein-dependent transport systems inner membrane component  75 
 
 
303 aa  390  1e-107  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_5979  binding-protein-dependent transport systems inner membrane component  74.61 
 
 
303 aa  389  1e-107  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2091  binding-protein-dependent transport systems inner membrane component  69.26 
 
 
258 aa  386  1e-106  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.322391  n/a   
 
 
-
 
NC_013223  Dret_2097  binding-protein-dependent transport systems inner membrane component  58.4 
 
 
265 aa  330  2e-89  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0908154 
 
 
-
 
NC_007802  Jann_4107  binding-protein-dependent transport systems inner membrane component  47.49 
 
 
261 aa  212  5.999999999999999e-54  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3582  hypothetical protein  37.64 
 
 
278 aa  182  7e-45  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.928396  normal  0.804079 
 
 
-
 
NC_013526  Tter_2053  binding-protein-dependent transport systems inner membrane component  37.23 
 
 
285 aa  169  4e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0307  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
274 aa  166  5e-40  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0549  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpE  34.88 
 
 
272 aa  164  1.0000000000000001e-39  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2697  binding-protein-dependent transport systems inner membrane component  41 
 
 
293 aa  160  2e-38  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_3058  binding-protein-dependent transport systems inner membrane component  32.73 
 
 
286 aa  158  7e-38  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0256  binding-protein-dependent transport systems inner membrane component  35.58 
 
 
278 aa  157  1e-37  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0285  binding-protein-dependent transport systems inner membrane component  35.94 
 
 
279 aa  157  3e-37  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.424252  normal 
 
 
-
 
NC_009667  Oant_0311  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
292 aa  154  2e-36  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.466995  n/a   
 
 
-
 
NC_013526  Tter_2490  binding-protein-dependent transport systems inner membrane component  33.93 
 
 
279 aa  153  2.9999999999999998e-36  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.961495  n/a   
 
 
-
 
NC_009636  Smed_0188  binding-protein-dependent transport systems inner membrane component  32.12 
 
 
277 aa  153  2.9999999999999998e-36  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0952  binding-protein-dependent transport systems inner membrane component  34.22 
 
 
271 aa  152  7e-36  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0701  binding-protein-dependent transport systems inner membrane component  32.3 
 
 
315 aa  151  1e-35  Polaromonas sp. JS666  Bacteria  normal  0.338666  normal 
 
 
-
 
NC_004310  BR0237  sugar ABC transporter, permease protein  29.82 
 
 
291 aa  150  3e-35  Brucella suis 1330  Bacteria  normal  0.963709  n/a   
 
 
-
 
NC_009505  BOV_0230  sugar ABC transporter, permease protein  29.82 
 
 
291 aa  150  3e-35  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4709  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
278 aa  149  5e-35  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_1490  binding-protein-dependent transport systems inner membrane component  34.43 
 
 
277 aa  149  5e-35  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3493  binding-protein-dependent transport systems inner membrane component  29.18 
 
 
316 aa  149  7e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.552575 
 
 
-
 
NC_008786  Veis_2013  binding-protein-dependent transport systems inner membrane component  31.16 
 
 
285 aa  149  7e-35  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.81  normal  0.395958 
 
 
-
 
NC_010625  Bphy_6369  binding-protein-dependent transport systems inner membrane component  30.54 
 
 
317 aa  148  8e-35  Burkholderia phymatum STM815  Bacteria  normal  0.568723  normal 
 
 
-
 
NC_011899  Hore_00800  binding-protein-dependent transport systems inner membrane component  29.96 
 
 
280 aa  147  1.0000000000000001e-34  Halothermothrix orenii H 168  Bacteria  normal  0.303025  n/a   
 
 
-
 
NC_012848  Rleg_4987  binding-protein-dependent transport systems inner membrane component  33.06 
 
 
319 aa  147  2.0000000000000003e-34  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5860  binding-protein-dependent transport systems inner membrane component  35.78 
 
 
319 aa  147  2.0000000000000003e-34  Sinorhizobium medicae WSM419  Bacteria  normal  0.235146  normal 
 
 
-
 
NC_011899  Hore_03310  binding-protein-dependent transport systems inner membrane component  27.49 
 
 
288 aa  147  2.0000000000000003e-34  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2422  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
277 aa  145  6e-34  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.161716 
 
 
-
 
NC_013521  Sked_02950  carbohydrate ABC transporter membrane protein  31.18 
 
 
297 aa  145  8.000000000000001e-34  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5636  binding-protein-dependent transport systems inner membrane component  29.87 
 
 
317 aa  144  1e-33  Burkholderia phytofirmans PsJN  Bacteria  normal  0.330167  normal 
 
 
-
 
NC_011886  Achl_2899  binding-protein-dependent transport systems inner membrane component  30.4 
 
 
316 aa  144  1e-33  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009620  Smed_4977  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
288 aa  143  2e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0547171 
 
 
-
 
NC_007963  Csal_2612  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
276 aa  143  3e-33  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2818  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
255 aa  143  4e-33  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_04600  binding-protein-dependent transport systems inner membrane component  28.04 
 
 
277 aa  142  8e-33  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3341  putative sugar ABC transporter, permease protein  31.62 
 
 
292 aa  141  9.999999999999999e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.22127  normal  0.118781 
 
 
-
 
NC_008541  Arth_3685  binding-protein-dependent transport systems inner membrane component  33.59 
 
 
299 aa  141  9.999999999999999e-33  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_3142  sugar ABC transporter  32.88 
 
 
275 aa  140  1.9999999999999998e-32  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.367291  normal 
 
 
-
 
NC_012858  Rleg_6763  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
276 aa  140  1.9999999999999998e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.18605  normal 
 
 
-
 
NC_009667  Oant_0352  binding-protein-dependent transport systems inner membrane component  30.19 
 
 
277 aa  140  1.9999999999999998e-32  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3397  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
287 aa  140  1.9999999999999998e-32  Ruegeria sp. TM1040  Bacteria  normal  0.141396  normal  0.659935 
 
 
-
 
NC_008541  Arth_0050  binding-protein-dependent transport systems inner membrane component  28.72 
 
 
305 aa  140  1.9999999999999998e-32  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5850  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
276 aa  140  1.9999999999999998e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.590535  normal 
 
 
-
 
NC_008686  Pden_1049  binding-protein-dependent transport systems inner membrane component  32.54 
 
 
280 aa  139  3e-32  Paracoccus denitrificans PD1222  Bacteria  normal  0.622209  normal 
 
 
-
 
NC_012853  Rleg_5696  binding-protein-dependent transport systems inner membrane component  31.41 
 
 
283 aa  139  3.9999999999999997e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.697019  normal  0.0828938 
 
 
-
 
NC_007484  Noc_0280  ABC transporter, inner membrane subunit  33.21 
 
 
280 aa  139  6e-32  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.787211  n/a   
 
 
-
 
NC_012850  Rleg_2428  binding-protein-dependent transport systems inner membrane component  31.15 
 
 
317 aa  138  8.999999999999999e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.443713  normal  0.627473 
 
 
-
 
NC_013159  Svir_11600  carbohydrate ABC transporter membrane protein  31.54 
 
 
283 aa  137  1e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0029  binding-protein-dependent transport systems inner membrane component  31.27 
 
 
283 aa  137  1e-31  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000511748  n/a   
 
 
-
 
NC_009485  BBta_3227  putative sugar ABC transporter, permease protein  30.53 
 
 
285 aa  137  2e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0108394  normal  0.705578 
 
 
-
 
NC_013595  Sros_5740  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
289 aa  137  2e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.872391  normal  0.176709 
 
 
-
 
NC_009338  Mflv_3853  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
275 aa  135  5e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0623628 
 
 
-
 
NC_008726  Mvan_2542  binding-protein-dependent transport systems inner membrane component  33.08 
 
 
275 aa  135  6.0000000000000005e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.607728  normal 
 
 
-
 
NC_007802  Jann_3555  binding-protein-dependent transport systems inner membrane component  30.68 
 
 
279 aa  135  8e-31  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
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