More than 300 homologs were found in PanDaTox collection
for query gene Rpal_4909 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_4909  transcriptional regulator, Crp/Fnr family  100 
 
 
221 aa  449  1e-125  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.385812  n/a   
 
 
-
 
NC_007958  RPD_4082  cyclic nucleotide-binding  72.27 
 
 
220 aa  308  5e-83  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4231  Crp/FNR family transcriptional regulator  70.14 
 
 
220 aa  300  1e-80  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.572136 
 
 
-
 
NC_007925  RPC_4410  Crp/FNR family transcriptional regulator  60.95 
 
 
225 aa  253  2.0000000000000002e-66  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.994375  normal  0.444525 
 
 
-
 
NC_009485  BBta_6723  putative cyclic-AMP receptor-like protein  53.05 
 
 
235 aa  233  2.0000000000000002e-60  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.823634  normal 
 
 
-
 
NC_007958  RPD_1742  cyclic nucleotide-binding  55.71 
 
 
251 aa  226  3e-58  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2535  cyclic nucleotide-binding domain-containing protein  52.97 
 
 
228 aa  225  5.0000000000000005e-58  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3749  Crp/FNR family transcriptional regulator  56.54 
 
 
228 aa  221  9.999999999999999e-57  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.9168  normal 
 
 
-
 
NC_007958  RPD_1723  cyclic nucleotide-binding  55.61 
 
 
228 aa  221  9.999999999999999e-57  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.637067  normal 
 
 
-
 
NC_011004  Rpal_4383  transcriptional regulator, Crp/Fnr family  54.63 
 
 
221 aa  207  1e-52  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.140178  n/a   
 
 
-
 
NC_009485  BBta_1632  Crp/FNR family transcriptional regulator  48.18 
 
 
250 aa  204  6e-52  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0065  Crp/FNR family transcriptional regulator  47.87 
 
 
258 aa  184  9e-46  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0605636  normal 
 
 
-
 
NC_013131  Caci_2591  transcriptional regulator, Crp/Fnr family  36.87 
 
 
221 aa  100  3e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.44001  normal 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  32.22 
 
 
224 aa  95.9  4e-19  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  32.61 
 
 
352 aa  95.5  6e-19  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  28.81 
 
 
228 aa  87.8  1e-16  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  28.4 
 
 
228 aa  86.7  2e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  30.11 
 
 
350 aa  86.3  3e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  30.86 
 
 
226 aa  86.7  3e-16  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  27.84 
 
 
225 aa  85.1  7e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  32.26 
 
 
240 aa  84.3  0.000000000000001  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  27.84 
 
 
225 aa  84.7  0.000000000000001  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  29.59 
 
 
228 aa  83.6  0.000000000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  25.28 
 
 
219 aa  83.6  0.000000000000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  27.98 
 
 
225 aa  82.4  0.000000000000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  27.12 
 
 
355 aa  82.8  0.000000000000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  30.43 
 
 
348 aa  82.4  0.000000000000005  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  28.27 
 
 
354 aa  82  0.000000000000006  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  29.38 
 
 
222 aa  80.9  0.00000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  26.94 
 
 
236 aa  81.6  0.00000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  27.59 
 
 
224 aa  80.9  0.00000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  27.53 
 
 
247 aa  80.9  0.00000000000002  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  26.39 
 
 
254 aa  80.5  0.00000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  29.95 
 
 
234 aa  80.1  0.00000000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  26.39 
 
 
254 aa  80.1  0.00000000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  27.84 
 
 
225 aa  80.1  0.00000000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  31.22 
 
 
217 aa  79  0.00000000000005  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  28.73 
 
 
236 aa  79  0.00000000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  29.44 
 
 
233 aa  78.6  0.00000000000006  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  27.18 
 
 
220 aa  78.6  0.00000000000007  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  25.7 
 
 
254 aa  78.6  0.00000000000008  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  30 
 
 
222 aa  78.2  0.00000000000009  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  27.12 
 
 
225 aa  77.4  0.0000000000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  27.86 
 
 
231 aa  77.4  0.0000000000001  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  27.62 
 
 
225 aa  77.4  0.0000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  29.94 
 
 
226 aa  76.6  0.0000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  30.94 
 
 
232 aa  77  0.0000000000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  28.65 
 
 
226 aa  77  0.0000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  29.36 
 
 
235 aa  76.3  0.0000000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_013172  Bfae_24470  cAMP-binding protein  29.29 
 
 
261 aa  76.6  0.0000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  32.47 
 
 
234 aa  76.6  0.0000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  28.12 
 
 
226 aa  76.3  0.0000000000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  31.63 
 
 
229 aa  75.5  0.0000000000005  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  26.2 
 
 
243 aa  75.5  0.0000000000006  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  27.75 
 
 
214 aa  75.5  0.0000000000006  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  27.42 
 
 
242 aa  75.5  0.0000000000006  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_009485  BBta_4881  putative cyclic-AMP receptor-like protein  25.86 
 
 
281 aa  75.5  0.0000000000006  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal  0.139273 
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  27.41 
 
 
235 aa  75.5  0.0000000000006  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_007413  Ava_3066  Crp/FNR family transcriptional regulator  27.07 
 
 
232 aa  75.1  0.0000000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  27.22 
 
 
226 aa  75.1  0.0000000000007  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  28.32 
 
 
220 aa  75.1  0.0000000000008  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  27.53 
 
 
226 aa  75.1  0.0000000000009  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  25.56 
 
 
225 aa  75.1  0.0000000000009  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_3421  Crp/Fnr family transcriptional regulator  27.12 
 
 
232 aa  74.7  0.000000000001  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  26.97 
 
 
251 aa  74.3  0.000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  26.92 
 
 
222 aa  74.7  0.000000000001  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  27.22 
 
 
226 aa  74.3  0.000000000001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_007406  Nwi_0675  cyclic nucleotide-binding protein  25.57 
 
 
240 aa  73.6  0.000000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.35129  normal  0.370797 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  27.14 
 
 
225 aa  73.9  0.000000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  27.27 
 
 
223 aa  73.9  0.000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1234  Crp/FNR family transcriptional regulator  29.67 
 
 
232 aa  73.9  0.000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  27.98 
 
 
233 aa  73.2  0.000000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  28.9 
 
 
223 aa  73.2  0.000000000003  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  28.72 
 
 
254 aa  72.8  0.000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  27.98 
 
 
233 aa  73.2  0.000000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  25.79 
 
 
243 aa  72.8  0.000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_010524  Lcho_4140  cyclic nucleotide-binding protein  28.81 
 
 
243 aa  72.8  0.000000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  33.49 
 
 
229 aa  72.8  0.000000000004  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1101  Crp/FNR family transcriptional regulator  25.63 
 
 
246 aa  72.8  0.000000000004  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  28.02 
 
 
236 aa  72  0.000000000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  27.72 
 
 
234 aa  71.6  0.000000000008  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  29.83 
 
 
232 aa  71.2  0.00000000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3629  Crp/FNR family transcriptional regulator  27.18 
 
 
263 aa  71.2  0.00000000001  Frankia sp. CcI3  Bacteria  normal  normal  0.332638 
 
 
-
 
NC_012856  Rpic12D_3062  transcriptional regulator, Crp/Fnr family  25.38 
 
 
232 aa  71.6  0.00000000001  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  28.02 
 
 
236 aa  71.2  0.00000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  28.27 
 
 
228 aa  71.6  0.00000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  26.92 
 
 
233 aa  70.9  0.00000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  27.32 
 
 
239 aa  70.5  0.00000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  27.32 
 
 
228 aa  70.5  0.00000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  26.83 
 
 
222 aa  70.1  0.00000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  29.05 
 
 
249 aa  70.5  0.00000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  26.54 
 
 
230 aa  70.5  0.00000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2020  transcriptional regulator, Crp/Fnr family  28.9 
 
 
239 aa  70.5  0.00000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0424227  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  24.58 
 
 
227 aa  69.7  0.00000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  29.28 
 
 
232 aa  70.1  0.00000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  28.25 
 
 
224 aa  69.7  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  24.86 
 
 
231 aa  69.3  0.00000000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  25.25 
 
 
352 aa  69.3  0.00000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_010682  Rpic_3408  transcriptional regulator, Crp/Fnr family  23.86 
 
 
243 aa  68.9  0.00000000006  Ralstonia pickettii 12J  Bacteria  normal  normal  0.258046 
 
 
-
 
NC_011831  Cagg_1896  cyclic nucleotide-binding protein  27.23 
 
 
218 aa  68.6  0.00000000007  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
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