20 homologs were found in PanDaTox collection
for query gene Rpal_3753 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_3753  hypothetical protein  100 
 
 
94 aa  181  4e-45  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3254  curli production assembly/transport component CsgF, putative  56 
 
 
131 aa  53.5  8e-07  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0869  curli production assembly/transport component CsgF, putative  56 
 
 
131 aa  53.9  8e-07  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3153  curli production assembly/transport component CsgF, putative  56 
 
 
131 aa  53.5  8e-07  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3686  curli production assembly/transport component CsgF, putative  58 
 
 
131 aa  52.8  1e-06  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010501  PputW619_2473  curli production assembly/transport component CsgF precursor  46.03 
 
 
137 aa  53.1  1e-06  Pseudomonas putida W619  Bacteria  normal  0.947001  normal  0.308509 
 
 
-
 
NC_007954  Sden_0970  curli production assembly/transport component CsgF, putative  45 
 
 
135 aa  51.6  4e-06  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01505  putative curli production assembly/transport component  46.15 
 
 
151 aa  50.4  7e-06  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1037  curli production assembly/transport component CsgF, putative  52 
 
 
131 aa  48.9  2e-05  Shewanella baltica OS195  Bacteria  normal  normal  0.730845 
 
 
-
 
NC_010322  PputGB1_2464  curli production assembly/transport component CsgF precursor  43.75 
 
 
137 aa  49.7  2e-05  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3473  curli fiber protein CsgF, putative  48.08 
 
 
137 aa  48.9  2e-05  Pseudomonas putida KT2440  Bacteria  normal  0.910163  normal  0.86735 
 
 
-
 
NC_009665  Shew185_1004  curli production assembly/transport component CsgF, putative  52 
 
 
131 aa  48.9  2e-05  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2298  hypothetical protein  48.08 
 
 
137 aa  48.9  2e-05  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1025  curli production assembly/transport component CsgF, putative  52 
 
 
131 aa  48.9  2e-05  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3335  curli production assembly/transport component CsgF, putative  52 
 
 
131 aa  48.9  2e-05  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0642  curli production assembly/transport component CsgF, putative  48 
 
 
130 aa  48.9  3e-05  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00175392  unclonable  1.39477e-08 
 
 
-
 
NC_007492  Pfl01_1992  curli fiber protein CsgF, putative  48.98 
 
 
143 aa  48.9  3e-05  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0290148  normal  0.0475001 
 
 
-
 
NC_009438  Sputcn32_2985  curli production assembly/transport component CsgF, putative  50 
 
 
131 aa  48.9  3e-05  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2858  curli production assembly/transport component CsgF, putative  51.06 
 
 
129 aa  47  9e-05  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1728  curli production assembly/transport component CsgF precursor  44.64 
 
 
139 aa  41.2  0.005  Shewanella loihica PV-4  Bacteria  normal  0.6125  normal 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>