More than 300 homologs were found in PanDaTox collection
for query gene Rpal_3741 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011004  Rpal_3741  transcriptional regulator, Crp/Fnr family  100 
 
 		 242 aa  491  9.999999999999999e-139  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  39.35 
 
 		 244 aa  152  5e-36  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal  1 
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  40.48 
 
 		 225 aa  148  9e-35  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.0893417 
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  37.12 
 
 		 244 aa  147  1.0000000000000001e-34  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  38.81 
 
 		 244 aa  145  4.0000000000000006e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  38.81 
 
 		 244 aa  145  4.0000000000000006e-34  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal  1 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  37.75 
 
 		 246 aa  143  2e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  40.57 
 
 		 247 aa  141  8e-33  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  42.65 
 
 		 299 aa  140  1.9999999999999998e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  42.65 
 
 		 317 aa  140  3e-32  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal  1 
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  37.74 
 
 		 247 aa  139  3.9999999999999997e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  36.27 
 
 		 246 aa  138  7e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  39.82 
 
 		 298 aa  138  7.999999999999999e-32  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal  1 
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  39.9 
 
 		 236 aa  138  1e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  35.82 
 
 		 239 aa  134  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal  1 
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  37.32 
 
 		 243 aa  134  9.999999999999999e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  hitchhiker  0.000118444 
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  35.5 
 
 		 246 aa  133  1.9999999999999998e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal  1 
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  35.53 
 
 		 259 aa  130  1.0000000000000001e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  hitchhiker  0.00010652 
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  34.19 
 
 		 281 aa  128  8.000000000000001e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.999867 
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  37.68 
 
 		 257 aa  127  2.0000000000000002e-28  Methylobacterium sp. 4-46  Bacteria  normal  1  decreased coverage  0.00106309 
 
 
-
 
NC_009511  Swit_0953  CRP/FNR family transcriptional regulator  37.11 
 
 		 254 aa  126  3e-28  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  34.04 
 
 		 307 aa  126  3e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  37.1 
 
 		 268 aa  126  4.0000000000000003e-28  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  34.65 
 
 		 315 aa  125  5e-28  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  35.65 
 
 		 384 aa  125  7e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  36.23 
 
 		 255 aa  125  7e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  32.05 
 
 		 259 aa  125  8.000000000000001e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.161686 
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  32.05 
 
 		 259 aa  125  8.000000000000001e-28  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.996332 
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  35.65 
 
 		 246 aa  123  3e-27  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  36.36 
 
 		 249 aa  122  4e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  33.33 
 
 		 259 aa  122  4e-27  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  33.03 
 
 		 248 aa  122  5e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  34.88 
 
 		 384 aa  120  9.999999999999999e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_3832  transcriptional regulator, Crp/Fnr family  31.49 
 
 		 245 aa  120  1.9999999999999998e-26  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  37.69 
 
 		 255 aa  120  3e-26  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  31.58 
 
 		 234 aa  119  3.9999999999999996e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.0477074 
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  36.94 
 
 		 281 aa  119  4.9999999999999996e-26  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  36.95 
 
 		 255 aa  119  4.9999999999999996e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_011894  Mnod_6130  putative transcriptional regulator, Crp/Fnr family  38.04 
 
 		 244 aa  119  6e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011893  Mnod_8765  putative transcriptional regulator, Crp/Fnr family  38.04 
 
 		 244 aa  118  7e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474033  n/a   
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  37.19 
 
 		 376 aa  118  9.999999999999999e-26  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal  1 
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  33.77 
 
 		 254 aa  116  3e-25  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  35.45 
 
 		 249 aa  115  3.9999999999999997e-25  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  35.32 
 
 		 263 aa  113  3e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal  1 
 
 
-
 
NC_010505  Mrad2831_2609  Crp/FNR family transcriptional regulator  33.76 
 
 		 293 aa  112  5e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.325512  normal  1 
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  33.5 
 
 		 250 aa  110  1.0000000000000001e-23  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal  1 
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  33.33 
 
 		 247 aa  108  7.000000000000001e-23  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  35.03 
 
 		 249 aa  108  9.000000000000001e-23  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  29.83 
 
 		 267 aa  107  1e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  35.03 
 
 		 249 aa  108  1e-22  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.371562 
 
 
-
 
NC_009511  Swit_0955  CRP/FNR family transcriptional regulator  31.44 
 
 		 226 aa  107  2e-22  Sphingomonas wittichii RW1  Bacteria  normal  0.869769  normal  1 
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  35.2 
 
 		 250 aa  107  2e-22  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  28.51 
 
 		 243 aa  105  5e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_2447  cyclic nucleotide-binding protein  32.88 
 
 		 255 aa  105  7e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_3499  CRP/FNR family transcriptional regulator  30.89 
 
 		 286 aa  105  8e-22  Methylobacterium extorquens PA1  Bacteria  normal  0.519814  normal  1 
 
 
-
 
NC_008254  Meso_2575  Crp/FNR family transcriptional regulator  32.21 
 
 		 240 aa  103  3e-21  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008686  Pden_2108  CRP/FNR family transcriptional regulator  31.5 
 
 		 243 aa  101  1e-20  Paracoccus denitrificans PD1222  Bacteria  normal  0.819689  normal  0.0771917 
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  32.97 
 
 		 250 aa  99.8  4e-20  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  33.8 
 
 		 246 aa  99  6e-20  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011004  Rpal_1184  transcriptional regulator, Crp/Fnr family  27.54 
 
 		 243 aa  99  6e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  33.97 
 
 		 246 aa  98.6  9e-20  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  32.02 
 
 		 243 aa  96.7  3e-19  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  32.51 
 
 		 243 aa  95.5  6e-19  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.173486 
 
 
-
 
NC_007958  RPD_3805  cyclic nucleotide-binding  28.18 
 
 		 263 aa  94.4  1e-18  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_0983  Crp/FNR family transcriptional regulator  25.53 
 
 		 245 aa  94.4  2e-18  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  30.73 
 
 		 241 aa  92.8  4e-18  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  33.51 
 
 		 253 aa  91.7  1e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_6056  Crp/FNR family transcriptional regulator  28.86 
 
 		 241 aa  89.4  5e-17  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  31.96 
 
 		 235 aa  89  6e-17  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_007778  RPB_4068  Crp/FNR family transcriptional regulator  27.98 
 
 		 247 aa  89  7e-17  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.936766  normal  1 
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  31.96 
 
 		 253 aa  86.7  3e-16  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  31.17 
 
 		 262 aa  86.7  3e-16  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  28.37 
 
 		 230 aa  86.3  4e-16  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  30.36 
 
 		 252 aa  85.5  6e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_009485  BBta_2391  CRP/FNR family transcriptional regulator  30.54 
 
 		 274 aa  85.5  7e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  33.17 
 
 		 252 aa  84  0.000000000000002  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_004311  BRA0414  Crp/FNR family transcriptional regulator  30.57 
 
 		 252 aa  83.2  0.000000000000004  Brucella suis 1330  Bacteria  normal  0.766284  n/a   
 
 
-
 
NC_009504  BOV_A0357  Crp/FNR family transcriptional regulator  30.57 
 
 		 252 aa  83.2  0.000000000000004  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  29.8 
 
 		 257 aa  82  0.000000000000008  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009620  Smed_4822  cyclic nucleotide-binding protein  33.33 
 
 		 243 aa  80.9  0.00000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.379105  normal  0.123433 
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  30.73 
 
 		 262 aa  77.8  0.0000000000001  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  0.586423 
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  27.6 
 
 		 276 aa  75.9  0.0000000000006  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_011894  Mnod_5597  putative transcriptional regulator, Crp/Fnr family  32.64 
 
 		 246 aa  75.1  0.0000000000008  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0675352  n/a   
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  28.95 
 
 		 243 aa  75.5  0.0000000000008  Thioalkalivibrio sp. K90mix  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  28 
 
 		 242 aa  75.1  0.0000000000009  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  30.1 
 
 		 249 aa  74.3  0.000000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  30.58 
 
 		 248 aa  74.3  0.000000000002  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  30.58 
 
 		 251 aa  73.6  0.000000000002  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  26.51 
 
 		 244 aa  73.2  0.000000000004  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  27.93 
 
 		 254 aa  71.6  0.000000000009  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  26.39 
 
 		 263 aa  71.2  0.00000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_007794  Saro_0490  CRP/FNR family transcriptional regulator  28.87 
 
 		 256 aa  71.2  0.00000000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  27.04 
 
 		 250 aa  70.5  0.00000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  26.17 
 
 		 274 aa  70.9  0.00000000002  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  29.83 
 
 		 242 aa  70.9  0.00000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  27.6 
 
 		 256 aa  71.2  0.00000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  1  normal  0.858211 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  29.19 
 
 		 231 aa  69.7  0.00000000004  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  29.02 
 
 		 249 aa  69.7  0.00000000004  Burkholderia ambifaria MC40-6  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002977  MCA2120  Crp/FNR family transcriptional regulator  29.15 
 
 		 245 aa  69.3  0.00000000005  Methylococcus capsulatus str. Bath  Bacteria  normal  1  n/a   
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  27.94 
 
 		 231 aa  68.9  0.00000000006  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
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