More than 300 homologs were found in PanDaTox collection
for query gene Rpal_3523 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011004  Rpal_3523  Holliday junction resolvase-like protein  100 
 
 		 160 aa  311  2.9999999999999996e-84  Rhodopseudomonas palustris TIE-1  Bacteria  hitchhiker  0.00889049  n/a   
 
 
-
 
NC_007778  RPB_2429  Holliday junction resolvase-like protein  88.75 
 
 		 160 aa  285  2e-76  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.0446184 
 
 
-
 
NC_007958  RPD_3023  Holliday junction resolvase-like protein  89.31 
 
 		 160 aa  283  5e-76  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.438725  normal  0.394583 
 
 
-
 
NC_007964  Nham_2279  Holliday junction resolvase-like protein  85.44 
 
 		 168 aa  269  1e-71  Nitrobacter hamburgensis X14  Bacteria  normal  0.273152  n/a   
 
 
-
 
NC_007406  Nwi_2004  Holliday junction resolvase-like protein  83.54 
 
 		 163 aa  263  8e-70  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.166059  normal  0.662003 
 
 
-
 
NC_009485  BBta_4721  Holliday junction resolvase-like protein  83.65 
 
 		 161 aa  263  8e-70  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007925  RPC_2255  Holliday junction resolvase-like protein  83.65 
 
 		 163 aa  247  4e-65  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.86844  normal  0.55099 
 
 
-
 
NC_009720  Xaut_3922  Holliday junction resolvase YqgF  74.51 
 
 		 176 aa  216  1e-55  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_1879  Holliday junction resolvase-like protein  67.83 
 
 		 160 aa  178  2.9999999999999997e-44  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.620593  normal  1 
 
 
-
 
NC_010581  Bind_1895  Holliday junction resolvase-like protein  61.69 
 
 		 165 aa  176  1e-43  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.273411  normal  1 
 
 
-
 
NC_008044  TM1040_0967  Holliday junction resolvase-like protein  64.08 
 
 		 157 aa  172  9.999999999999999e-43  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008686  Pden_0510  Holliday junction resolvase-like protein  64.83 
 
 		 158 aa  173  9.999999999999999e-43  Paracoccus denitrificans PD1222  Bacteria  normal  0.556579  normal  1 
 
 
-
 
NC_007493  RSP_2684  Holliday junction resolvase-like protein  65.03 
 
 		 160 aa  172  1.9999999999999998e-42  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.173322  n/a   
 
 
-
 
NC_009049  Rsph17029_1342  Holliday junction resolvase-like protein  65.03 
 
 		 160 aa  172  1.9999999999999998e-42  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00888056  normal  0.184568 
 
 
-
 
NC_009719  Plav_2841  Holliday junction resolvase YqgF  60 
 
 		 182 aa  168  3e-41  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.636675  normal  0.911101 
 
 
-
 
NC_008254  Meso_1361  Holliday junction resolvase YqgF  65.69 
 
 		 160 aa  165  2.9999999999999998e-40  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011666  Msil_0742  Holliday junction resolvase-like protein  56.25 
 
 		 161 aa  164  5e-40  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0120989 
 
 
-
 
NC_009952  Dshi_1064  Holliday junction resolvase-like protein  62.24 
 
 		 163 aa  164  5e-40  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.282287  normal  1 
 
 
-
 
NC_010511  M446_4344  Holliday junction resolvase YqgF  62.86 
 
 		 168 aa  162  1.0000000000000001e-39  Methylobacterium sp. 4-46  Bacteria  normal  0.892789  normal  0.367855 
 
 
-
 
NC_012850  Rleg_1714  Holliday junction resolvase-like protein  56.41 
 
 		 164 aa  161  3e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.396791 
 
 
-
 
NC_011369  Rleg2_1518  Holliday junction resolvase-like protein  55.77 
 
 		 163 aa  160  7e-39  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.793177 
 
 
-
 
NC_011894  Mnod_3314  Holliday junction resolvase YqgF  61.03 
 
 		 163 aa  157  6e-38  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009636  Smed_0941  Holliday junction resolvase-like protein  57.14 
 
 		 165 aa  156  1e-37  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.22726 
 
 
-
 
NC_008347  Mmar10_1708  Holliday junction resolvase YqgF  61.15 
 
 		 151 aa  156  1e-37  Maricaulis maris MCS10  Bacteria  normal  1  normal  0.180151 
 
 
-
 
NC_007643  Rru_A3178  Holliday junction resolvase YqgF  63.43 
 
 		 161 aa  155  3e-37  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.825708  n/a   
 
 
-
 
NC_011989  Avi_1768  Holliday junction resolvase-like protein  59.12 
 
 		 158 aa  154  4e-37  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007802  Jann_2181  Holliday junction resolvase YqgF  61.43 
 
 		 145 aa  154  7e-37  Jannaschia sp. CCS1  Bacteria  normal  0.659798  normal  1 
 
 
-
 
NC_010505  Mrad2831_0475  Holliday junction resolvase YqgF  60.31 
 
 		 170 aa  151  2.9999999999999998e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.437798  normal  0.0955854 
 
 
-
 
NC_008048  Sala_0925  Holliday junction resolvase YqgF  62.32 
 
 		 152 aa  152  2.9999999999999998e-36  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.233016  normal  1 
 
 
-
 
NC_007794  Saro_0906  Holliday junction resolvase-like protein  60.29 
 
 		 155 aa  150  8e-36  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.167999  n/a   
 
 
-
 
NC_010725  Mpop_3519  Holliday junction resolvase YqgF  57.43 
 
 		 165 aa  148  4e-35  Methylobacterium populi BJ001  Bacteria  normal  0.432695  normal  1 
 
 
-
 
NC_011757  Mchl_3643  Holliday junction resolvase YqgF  58.09 
 
 		 165 aa  147  8e-35  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.724014 
 
 
-
 
NC_010172  Mext_3319  Holliday junction resolvase YqgF  58.09 
 
 		 160 aa  147  9e-35  Methylobacterium extorquens PA1  Bacteria  normal  0.587532  normal  0.657687 
 
 
-
 
NC_009504  BOV_A0563  Holliday junction resolvase-like protein  58.27 
 
 		 162 aa  144  5e-34  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_009668  Oant_3664  Holliday junction resolvase-like protein  57.97 
 
 		 165 aa  143  9e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_004311  BRA0597  Holliday junction resolvase-like protein  57.55 
 
 		 162 aa  142  2e-33  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_0601  Holliday junction resolvase YqgF  56.62 
 
 		 151 aa  141  3e-33  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  0.613999 
 
 
-
 
NC_008783  BARBAKC583_0838  hypothetical protein  48.97 
 
 		 161 aa  141  5e-33  Bartonella bacilliformis KC583  Bacteria  normal  0.115372  n/a   
 
 
-
 
NC_010338  Caul_1518  Holliday junction resolvase YqgF  50.31 
 
 		 164 aa  137  6e-32  Caulobacter sp. K31  Bacteria  normal  1  normal  0.470214 
 
 
-
 
NC_011725  BCB4264_A4506  Holliday junction resolvase-like protein  50.74 
 
 		 137 aa  123  1e-27  Bacillus cereus B4264  Bacteria  normal  0.860088  n/a   
 
 
-
 
NC_011658  BCAH187_A4519  Holliday junction resolvase-like protein  50.74 
 
 		 137 aa  122  2e-27  Bacillus cereus AH187  Bacteria  hitchhiker  0.000203205  n/a   
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  50.75 
 
 		 140 aa  122  2e-27  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  50.37 
 
 		 137 aa  121  4e-27  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  50.37 
 
 		 137 aa  121  4e-27  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal  1 
 
 
-
 
NC_003909  BCE_4469  Holliday junction resolvase-like protein  50.37 
 
 		 137 aa  120  6e-27  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000240455  n/a   
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  50.37 
 
 		 137 aa  120  6e-27  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_005957  BT9727_4119  Holliday junction resolvase-like protein  50.37 
 
 		 137 aa  120  6e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  3.61572e-18  n/a   
 
 
-
 
NC_006274  BCZK4130  Holliday junction resolvase-like protein  50.37 
 
 		 137 aa  120  6e-27  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000238321  n/a   
 
 
-
 
NC_011773  BCAH820_4466  Holliday junction resolvase-like protein  50.37 
 
 		 137 aa  120  6e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000283196 
 
 
-
 
NC_007530  GBAA_4614  Holliday junction resolvase-like protein  50.37 
 
 		 137 aa  120  6e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.0000000000846091  n/a   
 
 
-
 
NC_009484  Acry_0873  Holliday junction resolvase YqgF  46.98 
 
 		 158 aa  120  7e-27  Acidiphilium cryptum JF-5  Bacteria  normal  0.205729  n/a   
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  48.87 
 
 		 142 aa  119  1.9999999999999998e-26  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_009674  Bcer98_3099  Holliday junction resolvase-like protein  48.89 
 
 		 137 aa  118  3e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00212776  n/a   
 
 
-
 
NC_008261  CPF_2031  Holliday junction resolvase-like protein  42.54 
 
 		 137 aa  118  3e-26  Clostridium perfringens ATCC 13124  Bacteria  normal  1  n/a   
 
 
-
 
NC_008262  CPR_1748  Holliday junction resolvase-like protein  42.54 
 
 		 137 aa  118  3e-26  Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_009253  Dred_0775  Holliday junction resolvase YqgF  47.33 
 
 		 137 aa  118  3.9999999999999996e-26  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000000463594  n/a   
 
 
-
 
NC_013440  Hoch_5401  Holliday junction resolvase YqgF  53.03 
 
 		 139 aa  117  7.999999999999999e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  0.616966  normal  0.68966 
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  45.8 
 
 		 141 aa  116  9.999999999999999e-26  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  49.62 
 
 		 138 aa  115  1.9999999999999998e-25  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  53.79 
 
 		 138 aa  115  1.9999999999999998e-25  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008531  LEUM_0558  Holliday junction resolvase-like protein  46.85 
 
 		 143 aa  115  3e-25  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  1  n/a   
 
 
-
 
NC_008532  STER_1938  Holliday junction resolvase-like protein  46.38 
 
 		 139 aa  113  1.0000000000000001e-24  Streptococcus thermophilus LMD-9  Bacteria  unclonable  0.0000000471473  n/a   
 
 
-
 
NC_010001  Cphy_2297  Holliday junction resolvase YqgF  43.97 
 
 		 150 aa  112  2.0000000000000002e-24  Clostridium phytofermentans ISDg  Bacteria  normal  0.470334  n/a   
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  43.94 
 
 		 139 aa  112  3e-24  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_009513  Lreu_0535  Holliday junction resolvase-like protein  43.66 
 
 		 147 aa  110  1.0000000000000001e-23  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000331559  n/a   
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  45.59 
 
 		 140 aa  109  2.0000000000000002e-23  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_011365  Gdia_3370  Holliday junction resolvase YqgF  47.73 
 
 		 154 aa  108  3e-23  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  0.13465 
 
 
-
 
NC_004116  SAG2090  Holliday junction resolvase-like protein  43.7 
 
 		 136 aa  108  3e-23  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.000724166  n/a   
 
 
-
 
NC_008528  OEOE_1165  RNase H-like ribonuclease  45.39 
 
 		 144 aa  108  4.0000000000000004e-23  Oenococcus oeni PSU-1  Bacteria  normal  0.345189  n/a   
 
 
-
 
NC_013216  Dtox_2265  Holliday junction resolvase YqgF  46.97 
 
 		 139 aa  107  5e-23  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  hitchhiker  0.0000233904 
 
 
-
 
NC_009972  Haur_3633  Holliday junction resolvase YqgF  38.73 
 
 		 158 aa  106  1e-22  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  37.14 
 
 		 142 aa  102  3e-21  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_002976  SERP1180  Holliday junction resolvase-like protein  40.71 
 
 		 142 aa  101  5e-21  Staphylococcus epidermidis RP62A  Bacteria  normal  1  n/a   
 
 
-
 
NC_013171  Apre_0938  Holliday junction resolvase YqgF  41.67 
 
 		 139 aa  101  5e-21  Anaerococcus prevotii DSM 20548  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_1778  Holliday junction resolvase YqgF  40.15 
 
 		 141 aa  99  3e-20  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.140554 
 
 
-
 
NC_009632  SaurJH1_1707  Holliday junction resolvase-like protein  41.18 
 
 		 142 aa  97.1  8e-20  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.24342  n/a   
 
 
-
 
NC_009487  SaurJH9_1673  Holliday junction resolvase-like protein  41.18 
 
 		 142 aa  97.1  8e-20  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.514842  n/a   
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  40 
 
 		 151 aa  96.7  1e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal  1 
 
 
-
 
NC_008530  LGAS_0423  Holliday junction resolvase-like protein  41.48 
 
 		 143 aa  96.3  1e-19  Lactobacillus gasseri ATCC 33323  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013161  Cyan8802_1969  Holliday junction resolvase-like protein  40.77 
 
 		 139 aa  93.6  1e-18  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  0.0212683 
 
 
-
 
NC_011726  PCC8801_1942  Holliday junction resolvase-like protein  40.77 
 
 		 139 aa  93.6  1e-18  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  44.03 
 
 		 163 aa  93.2  1e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal  1 
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  39.23 
 
 		 149 aa  92  3e-18  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  40.6 
 
 		 141 aa  91.7  4e-18  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal  1 
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  41.35 
 
 		 146 aa  91.3  5e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_008527  LACR_0138  Holliday junction resolvase-like protein  42.86 
 
 		 143 aa  91.3  5e-18  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_2015  Holliday junction resolvase YqgF  42.11 
 
 		 163 aa  90.9  6e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.756916  normal  0.07881 
 
 
-
 
NC_007604  Synpcc7942_2398  Holliday junction resolvase-like protein  41.73 
 
 		 149 aa  90.9  6e-18  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0366153  hitchhiker  0.00151496 
 
 
-
 
NC_014248  Aazo_4148  Holliday junction resolvase YqgF  39.23 
 
 		 158 aa  90.1  1e-17  'Nostoc azollae' 0708  Bacteria  normal  0.927535  n/a   
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  39.69 
 
 		 222 aa  90.1  1e-17  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_011729  PCC7424_3098  Holliday junction resolvase-like protein  37.59 
 
 		 151 aa  89.7  1e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_014210  Ndas_3074  Holliday junction resolvase YqgF  43.66 
 
 		 161 aa  89.4  2e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.459764 
 
 
-
 
NC_009380  Strop_1829  Holliday junction resolvase YqgF  39.72 
 
 		 153 aa  88.6  3e-17  Salinispora tropica CNB-440  Bacteria  normal  0.0551936  normal  1 
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  36.03 
 
 		 153 aa  89  3e-17  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_007760  Adeh_1232  Holliday junction resolvase-like protein  42.11 
 
 		 137 aa  87  8e-17  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_2379  Holliday junction resolvase-like protein  47.79 
 
 		 171 aa  87  9e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014151  Cfla_1819  Holliday junction resolvase YqgF  42.86 
 
 		 190 aa  87  1e-16  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0503115  normal  1 
 
 
-
 
NC_011891  A2cp1_2727  Holliday junction resolvase-like protein  41.35 
 
 		 137 aa  86.3  1e-16  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_0153  Holliday junction resolvase-like protein  36.84 
 
 		 141 aa  86.7  1e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0185653  n/a   
 
 
-
 
NC_009953  Sare_1820  Holliday junction resolvase YqgF  39.72 
 
 		 153 aa  86.7  1e-16  Salinispora arenicola CNS-205  Bacteria  normal  1  hitchhiker  0.0000610168 
 
 
-
 
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