220 homologs were found in PanDaTox collection
for query gene Rpal_1184 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_1184  transcriptional regulator, Crp/Fnr family  100 
 
 
243 aa  496  1e-139  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3805  cyclic nucleotide-binding  69.04 
 
 
263 aa  353  2e-96  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4068  Crp/FNR family transcriptional regulator  68.33 
 
 
247 aa  352  4e-96  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.936766  normal 
 
 
-
 
NC_009485  BBta_6056  Crp/FNR family transcriptional regulator  63.18 
 
 
241 aa  320  1.9999999999999998e-86  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2447  cyclic nucleotide-binding protein  39.66 
 
 
255 aa  176  4e-43  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  38.84 
 
 
247 aa  171  6.999999999999999e-42  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_010725  Mpop_3832  transcriptional regulator, Crp/Fnr family  39.22 
 
 
245 aa  169  3e-41  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  36.44 
 
 
248 aa  168  7e-41  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  41.56 
 
 
247 aa  166  2e-40  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  42.31 
 
 
247 aa  166  2e-40  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  36.16 
 
 
246 aa  160  2e-38  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal 
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  36.12 
 
 
250 aa  158  8e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal 
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  38.3 
 
 
244 aa  157  2e-37  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal 
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  34.82 
 
 
239 aa  156  3e-37  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  37.18 
 
 
244 aa  155  5.0000000000000005e-37  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  37.18 
 
 
244 aa  155  5.0000000000000005e-37  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  34.62 
 
 
234 aa  155  6e-37  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0477074 
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  35.14 
 
 
249 aa  153  2e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  34.8 
 
 
244 aa  144  1e-33  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  37.66 
 
 
246 aa  143  2e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  36.8 
 
 
246 aa  138  7.999999999999999e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  35.65 
 
 
249 aa  138  8.999999999999999e-32  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  37.69 
 
 
225 aa  137  2e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0893417 
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  35.19 
 
 
243 aa  134  9.999999999999999e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000118444 
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  34.03 
 
 
254 aa  133  3e-30  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  32.9 
 
 
384 aa  133  3e-30  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  34.75 
 
 
259 aa  132  3.9999999999999996e-30  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.996332 
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  34.75 
 
 
259 aa  132  3.9999999999999996e-30  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.161686 
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  32.03 
 
 
384 aa  130  1.0000000000000001e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  33.76 
 
 
281 aa  130  2.0000000000000002e-29  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  34.75 
 
 
259 aa  130  2.0000000000000002e-29  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  34.62 
 
 
255 aa  130  2.0000000000000002e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  36.8 
 
 
246 aa  127  1.0000000000000001e-28  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  35.37 
 
 
255 aa  127  1.0000000000000001e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  33.62 
 
 
236 aa  127  2.0000000000000002e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  30.83 
 
 
267 aa  125  5e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2609  Crp/FNR family transcriptional regulator  32.35 
 
 
293 aa  125  6e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.325512  normal 
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  37 
 
 
257 aa  125  8.000000000000001e-28  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00106309 
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  32.61 
 
 
255 aa  124  1e-27  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0953  CRP/FNR family transcriptional regulator  31.9 
 
 
254 aa  124  1e-27  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  31.74 
 
 
376 aa  120  1.9999999999999998e-26  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal 
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  32.33 
 
 
268 aa  119  4.9999999999999996e-26  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  33.05 
 
 
298 aa  119  4.9999999999999996e-26  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  31.8 
 
 
317 aa  115  5e-25  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  32.22 
 
 
299 aa  115  6e-25  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  33.82 
 
 
249 aa  114  1.0000000000000001e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.371562 
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  33.82 
 
 
249 aa  114  1.0000000000000001e-24  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  29.39 
 
 
259 aa  114  2.0000000000000002e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00010652 
 
 
-
 
NC_008686  Pden_2108  CRP/FNR family transcriptional regulator  28.44 
 
 
243 aa  110  3e-23  Paracoccus denitrificans PD1222  Bacteria  normal  0.819689  normal  0.0771917 
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  29.18 
 
 
307 aa  102  5e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  30.26 
 
 
281 aa  102  7e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.999867 
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  29.61 
 
 
315 aa  101  1e-20  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  28.7 
 
 
246 aa  100  2e-20  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0955  CRP/FNR family transcriptional regulator  30.61 
 
 
226 aa  100  2e-20  Sphingomonas wittichii RW1  Bacteria  normal  0.869769  normal 
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  28.26 
 
 
246 aa  99.8  3e-20  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3741  transcriptional regulator, Crp/Fnr family  27.54 
 
 
242 aa  99  6e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  30.13 
 
 
263 aa  97.8  1e-19  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal 
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  27.88 
 
 
243 aa  97.1  2e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011893  Mnod_8765  putative transcriptional regulator, Crp/Fnr family  27.19 
 
 
244 aa  95.1  9e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474033  n/a   
 
 
-
 
NC_010511  M446_5658  cyclic nucleotide-binding protein  28.26 
 
 
245 aa  95.1  9e-19  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6130  putative transcriptional regulator, Crp/Fnr family  27.63 
 
 
244 aa  94  2e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2391  CRP/FNR family transcriptional regulator  27.5 
 
 
274 aa  93.2  3e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  28.08 
 
 
252 aa  80.9  0.00000000000002  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  24.56 
 
 
243 aa  79.7  0.00000000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.173486 
 
 
-
 
NC_010172  Mext_3499  CRP/FNR family transcriptional regulator  25.6 
 
 
286 aa  78.6  0.00000000000009  Methylobacterium extorquens PA1  Bacteria  normal  0.519814  normal 
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  24.12 
 
 
243 aa  77.4  0.0000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  25.78 
 
 
276 aa  77.8  0.0000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  27.27 
 
 
257 aa  77  0.0000000000003  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  29.69 
 
 
263 aa  74.3  0.000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  23.65 
 
 
241 aa  74.3  0.000000000002  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  26.15 
 
 
230 aa  73.6  0.000000000003  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  25.51 
 
 
242 aa  73.6  0.000000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3568  cyclic nucleotide-binding domain-containing protein  23.79 
 
 
242 aa  73.2  0.000000000004  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  28.12 
 
 
250 aa  73.2  0.000000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_007963  Csal_0983  Crp/FNR family transcriptional regulator  26.75 
 
 
245 aa  72.8  0.000000000005  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  24.55 
 
 
262 aa  72.4  0.000000000005  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_004311  BRA0414  Crp/FNR family transcriptional regulator  26.13 
 
 
252 aa  70.5  0.00000000003  Brucella suis 1330  Bacteria  normal  0.766284  n/a   
 
 
-
 
NC_009504  BOV_A0357  Crp/FNR family transcriptional regulator  26.13 
 
 
252 aa  70.5  0.00000000003  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2400  CRP/FNR family transcriptional regulator  25.6 
 
 
250 aa  69.7  0.00000000004  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0375093 
 
 
-
 
NC_012850  Rleg_1153  transcriptional regulator, Crp/Fnr family  25 
 
 
250 aa  68.2  0.0000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4822  cyclic nucleotide-binding protein  28.65 
 
 
243 aa  67.8  0.0000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.379105  normal  0.123433 
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  24.53 
 
 
256 aa  67.8  0.0000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.858211 
 
 
-
 
NC_008254  Meso_2575  Crp/FNR family transcriptional regulator  26.21 
 
 
240 aa  65.1  0.000000001  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  26.77 
 
 
252 aa  62.8  0.000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_007794  Saro_0490  CRP/FNR family transcriptional regulator  24.87 
 
 
256 aa  62.8  0.000000005  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  25.33 
 
 
235 aa  61.2  0.00000001  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  24.67 
 
 
253 aa  60.8  0.00000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5597  putative transcriptional regulator, Crp/Fnr family  27.18 
 
 
246 aa  58.5  0.00000008  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0675352  n/a   
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  24.56 
 
 
250 aa  58.2  0.0000001  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  25.69 
 
 
253 aa  57.8  0.0000002  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  21.88 
 
 
250 aa  56.6  0.0000004  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  26.32 
 
 
240 aa  56.6  0.0000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  28.16 
 
 
242 aa  55.1  0.000001  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  27.37 
 
 
242 aa  54.3  0.000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  23.41 
 
 
249 aa  54.3  0.000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  23.22 
 
 
274 aa  53.5  0.000003  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  25 
 
 
230 aa  52.8  0.000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  25.53 
 
 
240 aa  53.1  0.000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  25.13 
 
 
231 aa  52.8  0.000005  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  22.27 
 
 
244 aa  52  0.000008  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>