More than 300 homologs were found in PanDaTox collection
for query gene RoseRS_4451 on replicon NC_009523
Organism: Roseiflexus sp. RS-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009523  RoseRS_4451  response regulator receiver modulated diguanylate cyclase  100 
 
 
314 aa  647    Roseiflexus sp. RS-1  Bacteria  normal  normal  0.586345 
 
 
-
 
NC_009767  Rcas_0804  response regulator receiver modulated diguanylate cyclase  94.57 
 
 
314 aa  619  1e-176  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.504991 
 
 
-
 
NC_011831  Cagg_0013  response regulator receiver modulated diguanylate cyclase  70.7 
 
 
314 aa  467  9.999999999999999e-131  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.992585 
 
 
-
 
NC_009972  Haur_4115  response regulator receiver protein  64.86 
 
 
311 aa  417  9.999999999999999e-116  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3221  response regulator receiver modulated diguanylate cyclase  32.99 
 
 
443 aa  171  1e-41  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0497788 
 
 
-
 
NC_009523  RoseRS_3924  response regulator receiver modulated diguanylate cyclase  31.97 
 
 
443 aa  171  1e-41  Roseiflexus sp. RS-1  Bacteria  normal  0.350169  normal 
 
 
-
 
NC_010320  Teth514_2061  response regulator receiver modulated diguanylate cyclase  32.31 
 
 
318 aa  171  1e-41  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0000000365539  n/a   
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  32.32 
 
 
310 aa  167  2.9999999999999998e-40  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_008578  Acel_1275  response regulator receiver modulated diguanylate cyclase  31.19 
 
 
304 aa  161  1e-38  Acidothermus cellulolyticus 11B  Bacteria  hitchhiker  0.00827298  normal  0.435617 
 
 
-
 
NC_009972  Haur_4308  response regulator receiver modulated diguanylate cyclase  27.99 
 
 
552 aa  148  1.0000000000000001e-34  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010644  Emin_0087  response regulator receiver modulated diguanylate cyclase  30.61 
 
 
308 aa  145  7.0000000000000006e-34  Elusimicrobium minutum Pei191  Bacteria  normal  normal  0.010948 
 
 
-
 
NC_009675  Anae109_1854  histidine kinase  30.03 
 
 
1111 aa  145  1e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.131557  normal 
 
 
-
 
NC_011831  Cagg_0424  response regulator receiver modulated diguanylate cyclase  31.29 
 
 
441 aa  142  5e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.130175  normal 
 
 
-
 
NC_009380  Strop_1873  response regulator receiver  30.66 
 
 
326 aa  142  6e-33  Salinispora tropica CNB-440  Bacteria  normal  normal  0.402703 
 
 
-
 
NC_009953  Sare_1866  response regulator receiver modulated diguanylate cyclase  30.29 
 
 
326 aa  142  6e-33  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3814  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  29.56 
 
 
1131 aa  141  1.9999999999999998e-32  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.257486 
 
 
-
 
NC_011831  Cagg_0599  response regulator receiver modulated diguanylate cyclase  29.8 
 
 
313 aa  137  3.0000000000000003e-31  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.464892  normal  0.548622 
 
 
-
 
NC_009972  Haur_3468  response regulator receiver modulated diguanylate cyclase  31.63 
 
 
412 aa  136  4e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0789  response regulator receiver protein  28.73 
 
 
278 aa  130  3e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  29.84 
 
 
322 aa  125  8.000000000000001e-28  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_013947  Snas_2593  response regulator receiver modulated diguanylate cyclase  30.17 
 
 
340 aa  125  8.000000000000001e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.483  normal  0.196753 
 
 
-
 
NC_013173  Dbac_2032  response regulator receiver modulated diguanylate cyclase  30.75 
 
 
310 aa  122  7e-27  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1584  response regulator receiver modulated diguanylate cyclase  27.04 
 
 
319 aa  114  2.0000000000000002e-24  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.335279  n/a   
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  44.8 
 
 
227 aa  110  2.0000000000000002e-23  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0239565 
 
 
-
 
NC_002939  GSU1102  DNA-binding response regulator  46.67 
 
 
225 aa  110  4.0000000000000004e-23  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0477  response regulator receiver modulated diguanylate cyclase  28.09 
 
 
312 aa  109  5e-23  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.520966  n/a   
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  42.28 
 
 
216 aa  107  2e-22  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  43.55 
 
 
229 aa  107  2e-22  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.258551 
 
 
-
 
NC_011729  PCC7424_2881  two component transcriptional regulator, LuxR family  39.29 
 
 
212 aa  107  2e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  42.28 
 
 
216 aa  107  2e-22  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011769  DvMF_0882  two component transcriptional regulator, winged helix family  46.03 
 
 
230 aa  107  3e-22  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.148935 
 
 
-
 
NC_011884  Cyan7425_5215  two component transcriptional regulator, LuxR family  40.98 
 
 
217 aa  103  3e-21  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_2387  two component transcriptional regulator  43.2 
 
 
229 aa  103  3e-21  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00115026  n/a   
 
 
-
 
NC_008609  Ppro_1341  response regulator receiver modulated diguanylate cyclase  31.92 
 
 
319 aa  103  5e-21  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  41.18 
 
 
225 aa  102  7e-21  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  41.18 
 
 
225 aa  102  8e-21  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_013173  Dbac_2662  two component transcriptional regulator, winged helix family  35.36 
 
 
231 aa  102  8e-21  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  34.95 
 
 
239 aa  102  8e-21  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_013169  Ksed_21620  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  42.74 
 
 
238 aa  102  1e-20  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.019443  normal  0.0473518 
 
 
-
 
NC_002939  GSU2219  response regulator  40.98 
 
 
123 aa  100  2e-20  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0567  two component transcriptional regulator, winged helix family  41.8 
 
 
225 aa  100  2e-20  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.463355  n/a   
 
 
-
 
NC_010814  Glov_2955  response regulator receiver modulated diguanylate cyclase  31.78 
 
 
308 aa  101  2e-20  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0640  two component transcriptional regulator  35.39 
 
 
233 aa  100  2e-20  Nitrobacter hamburgensis X14  Bacteria  normal  0.772339  n/a   
 
 
-
 
NC_011145  AnaeK_4125  two component transcriptional regulator, winged helix family  32.2 
 
 
230 aa  101  2e-20  Anaeromyxobacter sp. K  Bacteria  normal  0.125271  n/a   
 
 
-
 
NC_013501  Rmar_1501  response regulator receiver protein  42.98 
 
 
132 aa  100  4e-20  Rhodothermus marinus DSM 4252  Bacteria  normal  0.153095  n/a   
 
 
-
 
NC_010814  Glov_0588  two component transcriptional regulator, winged helix family  41.6 
 
 
226 aa  99.8  5e-20  Geobacter lovleyi SZ  Bacteria  normal  0.944339  n/a   
 
 
-
 
NC_007406  Nwi_0511  phosphate regulon transcriptional regulatory protein phoB  35.39 
 
 
234 aa  99.8  5e-20  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.473137 
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  41.54 
 
 
395 aa  100  5e-20  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  41.54 
 
 
395 aa  100  5e-20  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013521  Sked_31480  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  35.66 
 
 
239 aa  99.4  6e-20  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00376265  normal  0.556858 
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  31.07 
 
 
230 aa  99.4  7e-20  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_008312  Tery_4323  two component LuxR family transcriptional regulator  38.4 
 
 
215 aa  99.4  7e-20  Trichodesmium erythraeum IMS101  Bacteria  normal  0.115662  normal  0.727411 
 
 
-
 
NC_011891  A2cp1_4151  two component transcriptional regulator, winged helix family  31.95 
 
 
230 aa  99.4  8e-20  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1572  two component transcriptional regulator  45.38 
 
 
225 aa  99  8e-20  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000784208  n/a   
 
 
-
 
NC_004310  BR2143  phosphate regulon transcriptional regulatory protein Phob  38.24 
 
 
228 aa  99  9e-20  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2937  two component transcriptional regulator, winged helix family  39.17 
 
 
243 aa  99  9e-20  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  27.9 
 
 
353 aa  98.6  1e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  36.91 
 
 
231 aa  98.6  1e-19  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_009505  BOV_2058  phosphate regulon transcriptional regulatory protein PhoB  38.24 
 
 
228 aa  98.2  2e-19  Brucella ovis ATCC 25840  Bacteria  normal  0.275433  n/a   
 
 
-
 
NC_009485  BBta_1991  two component transcriptional regulator  36.52 
 
 
235 aa  98.2  2e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5261  two component transcriptional regulator, winged helix family  40.4 
 
 
237 aa  97.8  2e-19  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.909356  n/a   
 
 
-
 
NC_014151  Cfla_0717  two component transcriptional regulator, winged helix family  40.83 
 
 
242 aa  97.8  2e-19  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00000387016 
 
 
-
 
NC_009667  Oant_0766  two component transcriptional regulator  38.24 
 
 
228 aa  98.2  2e-19  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0291358  n/a   
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  37.25 
 
 
235 aa  98.2  2e-19  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0828  response regulator receiver modulated diguanylate cyclase  29.58 
 
 
324 aa  97.4  3e-19  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1288  two component transcriptional regulator  37.5 
 
 
228 aa  97.1  3e-19  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000000128008  n/a   
 
 
-
 
NC_002939  GSU2062  GGDEF domain-containing protein  25.25 
 
 
306 aa  96.7  4e-19  Geobacter sulfurreducens PCA  Bacteria  normal  0.0349551  n/a   
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  39.68 
 
 
384 aa  96.7  4e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_013223  Dret_0467  two component transcriptional regulator, winged helix family  39.68 
 
 
230 aa  96.7  5e-19  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4207  two component transcriptional regulator, winged helix family  43.31 
 
 
247 aa  96.3  6e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_0393  two component transcriptional regulator, winged helix family  43.7 
 
 
227 aa  96.3  6e-19  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.202895 
 
 
-
 
NC_007958  RPD_0893  winged helix family two component transcriptional regulator  41.98 
 
 
233 aa  96.3  6e-19  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_2051  two component transcriptional regulator, winged helix family  37.5 
 
 
236 aa  95.9  7e-19  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0981  two component transcriptional regulator, LuxR family  37.82 
 
 
221 aa  95.9  7e-19  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.416641 
 
 
-
 
NC_009092  Shew_2749  two component transcriptional regulator  40.77 
 
 
241 aa  95.9  7e-19  Shewanella loihica PV-4  Bacteria  decreased coverage  0.00000593879  unclonable  0.00000330773 
 
 
-
 
NC_014248  Aazo_0581  winged helix family two component transcriptional regulator  38.73 
 
 
242 aa  95.9  8e-19  'Nostoc azollae' 0708  Bacteria  normal  0.296955  n/a   
 
 
-
 
NC_007778  RPB_0781  two component transcriptional regulator  41.98 
 
 
233 aa  95.9  8e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.174075 
 
 
-
 
NC_013440  Hoch_0280  response regulator receiver protein  26.5 
 
 
295 aa  95.5  9e-19  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.932912 
 
 
-
 
NC_007498  Pcar_0653  two-component response regulator PhoB  43.12 
 
 
230 aa  95.1  1e-18  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.131558  n/a   
 
 
-
 
NC_011146  Gbem_1865  two component transcriptional regulator, winged helix family  29.05 
 
 
226 aa  95.5  1e-18  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_04130  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  40 
 
 
236 aa  95.5  1e-18  Micrococcus luteus NCTC 2665  Bacteria  normal  0.118973  n/a   
 
 
-
 
NC_007925  RPC_4918  two component transcriptional regulator  41.73 
 
 
234 aa  95.5  1e-18  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.134814 
 
 
-
 
NC_013385  Adeg_0644  two component transcriptional regulator, winged helix family  40.83 
 
 
236 aa  95.1  1e-18  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  37.59 
 
 
231 aa  95.5  1e-18  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.777838 
 
 
-
 
NC_013161  Cyan8802_1510  response regulator receiver sensor signal transduction histidine kinase  39.1 
 
 
374 aa  95.1  1e-18  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  38.28 
 
 
231 aa  95.1  1e-18  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_011726  PCC8801_1483  response regulator receiver sensor signal transduction histidine kinase  39.1 
 
 
374 aa  95.1  1e-18  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010816  BLD_0005  response regulator  38.57 
 
 
243 aa  95.5  1e-18  Bifidobacterium longum DJO10A  Bacteria  normal  0.201532  n/a   
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  28.62 
 
 
322 aa  95.1  1e-18  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_008576  Mmc1_1893  two component transcriptional regulator  39.13 
 
 
235 aa  95.1  1e-18  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.203788 
 
 
-
 
NC_008789  Hhal_0365  response regulator receiver modulated diguanylate cyclase  27.9 
 
 
308 aa  95.5  1e-18  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  36.84 
 
 
232 aa  94.4  2e-18  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1098  two component transcriptional regulator, winged helix family  43.2 
 
 
228 aa  94.4  2e-18  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_1878  two component transcriptional regulator  38.03 
 
 
242 aa  94.7  2e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.559477 
 
 
-
 
NC_010084  Bmul_2015  two component transcriptional regulator  37.75 
 
 
233 aa  94.4  2e-18  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.582968  normal 
 
 
-
 
NC_007643  Rru_A0603  two component transcriptional regulator  38.71 
 
 
233 aa  94.4  2e-18  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0519325  n/a   
 
 
-
 
NC_009719  Plav_0399  two component transcriptional regulator  38.71 
 
 
272 aa  94.7  2e-18  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.802217  normal 
 
 
-
 
NC_008554  Sfum_0707  two component transcriptional regulator  40.8 
 
 
227 aa  94.7  2e-18  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.598521  normal 
 
 
-
 
NC_011728  BbuZS7_0421  response regulatory protein  29.9 
 
 
305 aa  94.7  2e-18  Borrelia burgdorferi ZS7  Bacteria  normal  0.972098  n/a   
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  41.3 
 
 
234 aa  94.4  2e-18  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>