239 homologs were found in PanDaTox collection
for query gene Rmet_5562 on replicon NC_007974
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007974  Rmet_5562  histone-like nucleoid-structuring protein H-NS  100 
 
 
104 aa  207  4e-53  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4935  putative H-NS histon-like DNA-binding protein  74.26 
 
 
104 aa  150  5e-36  Cupriavidus metallidurans CH34  Bacteria  normal  0.529231  normal  0.833407 
 
 
-
 
NC_007348  Reut_B4990  histone-like nucleoid-structuring protein H-NS  73.53 
 
 
104 aa  149  2e-35  Ralstonia eutropha JMP134  Bacteria  normal  0.0212879  n/a   
 
 
-
 
NC_007336  Reut_C6005  histone-like nucleoid-structuring protein H-NS  73.08 
 
 
103 aa  145  2.0000000000000003e-34  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_3721  histone family protein nucleoid-structuring protein H-NS  59.8 
 
 
96 aa  121  4e-27  Ralstonia pickettii 12D  Bacteria  decreased coverage  0.00112888  normal  0.513312 
 
 
-
 
NC_010678  Rpic_4798  histone family protein nucleoid-structuring protein H-NS  59.8 
 
 
96 aa  121  4e-27  Ralstonia pickettii 12J  Bacteria  normal  0.272454  normal  0.166506 
 
 
-
 
NC_003296  RS00711  putative HNS-like transcription regulator protein  57.84 
 
 
96 aa  117  4.9999999999999996e-26  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.0000172984  normal 
 
 
-
 
NC_003296  RS02004  putative HNS-like transcription regulator protein  51.96 
 
 
95 aa  105  2e-22  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0969964  normal 
 
 
-
 
NC_003295  RSc0867  putative HNS-like transcription regulator protein  53.92 
 
 
96 aa  101  4e-21  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.139885 
 
 
-
 
NC_010515  Bcenmc03_5060  histone family protein nucleoid-structuring protein H-NS  51.43 
 
 
100 aa  100  5e-21  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3154  histone-like nucleoid-structuring protein H-NS  51.43 
 
 
100 aa  100  5e-21  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5214  histone family protein nucleoid-structuring protein H-NS  51.43 
 
 
100 aa  100  5e-21  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.319749 
 
 
-
 
NC_012849  Rpic12D_5158  histone family protein nucleoid-structuring protein H-NS  54.46 
 
 
97 aa  95.9  1e-19  Ralstonia pickettii 12D  Bacteria  normal  0.521264  normal  0.418842 
 
 
-
 
NC_007336  Reut_C6382  histone-like nucleoid-structuring protein H-NS  50.51 
 
 
589 aa  95.9  2e-19  Ralstonia eutropha JMP134  Bacteria  normal  0.493779  n/a   
 
 
-
 
NC_010086  Bmul_3279  histone family protein nucleoid-structuring protein H-NS  47.57 
 
 
97 aa  93.6  8e-19  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.0515948 
 
 
-
 
NC_007336  Reut_C6347  histone-like nucleoid-structuring protein H-NS  51.52 
 
 
516 aa  93.6  9e-19  Ralstonia eutropha JMP134  Bacteria  decreased coverage  0.0000113528  n/a   
 
 
-
 
NC_007650  BTH_II2207  H-NS histone family protein  47.17 
 
 
96 aa  93.2  1e-18  Burkholderia thailandensis E264  Bacteria  decreased coverage  0.0000000000144624  n/a   
 
 
-
 
NC_009075  BURPS668_A3002  H-NS histone family protein  46.23 
 
 
96 aa  92  2e-18  Burkholderia pseudomallei 668  Bacteria  unclonable  0.00000000000000136233  n/a   
 
 
-
 
NC_010512  Bcenmc03_6929  histone family protein nucleoid-structuring protein H-NS  48.11 
 
 
99 aa  92  2e-18  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.599841  normal 
 
 
-
 
NC_007435  BURPS1710b_A1239  H-NS histone family protein  46.23 
 
 
96 aa  92  2e-18  Burkholderia pseudomallei 1710b  Bacteria  unclonable  0.0000000000958752  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2886  H-NS histone family protein  46.23 
 
 
96 aa  92  2e-18  Burkholderia pseudomallei 1106a  Bacteria  hitchhiker  0.000145694  n/a   
 
 
-
 
NC_009079  BMA10247_A0401  H-NS histone family protein  46.23 
 
 
96 aa  92  2e-18  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.000000304691  n/a   
 
 
-
 
NC_008835  BMA10229_1739  H-NS histone family protein  46.23 
 
 
96 aa  92  2e-18  Burkholderia mallei NCTC 10229  Bacteria  unclonable  0.00000000000000443719  n/a   
 
 
-
 
NC_010623  Bphy_4285  histone family protein nucleoid-structuring protein H-NS  47.22 
 
 
97 aa  92  2e-18  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008784  BMASAVP1_1551  H-NS histone family protein  46.23 
 
 
96 aa  92  2e-18  Burkholderia mallei SAVP1  Bacteria  unclonable  0.0000000000000358636  n/a   
 
 
-
 
NC_007509  Bcep18194_C6596  histone-like nucleoid-structuring protein H-NS  46.67 
 
 
96 aa  91.7  3e-18  Burkholderia sp. 383  Bacteria  normal  0.540075  normal 
 
 
-
 
NC_010681  Bphyt_0265  histone family protein nucleoid-structuring protein H-NS  49.02 
 
 
98 aa  91.7  3e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_5671  histone-like nucleoid-structuring protein H-NS  54.29 
 
 
99 aa  91.7  3e-18  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6035  histone family protein nucleoid-structuring protein H-NS  54.29 
 
 
99 aa  91.7  3e-18  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.401704 
 
 
-
 
NC_010512  Bcenmc03_6525  histone family protein nucleoid-structuring protein H-NS  54.29 
 
 
99 aa  91.7  3e-18  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.381726 
 
 
-
 
NC_010087  Bmul_5767  histone family protein nucleoid-structuring protein H-NS  50.49 
 
 
99 aa  90.9  5e-18  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_2135  putative DNA-binding protein  54.12 
 
 
79 aa  90.5  6e-18  Burkholderia pseudomallei 668  Bacteria  normal  0.45202  n/a   
 
 
-
 
NC_007509  Bcep18194_C7449  histone-like nucleoid-structuring protein H-NS  53.33 
 
 
99 aa  89.4  1e-17  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_006349  BMAA0365  H-NS histone family protein  45.28 
 
 
96 aa  89  2e-17  Burkholderia mallei ATCC 23344  Bacteria  decreased coverage  0.00000040716  n/a   
 
 
-
 
NC_009379  Pnuc_0838  histone family protein nucleoid-structuring protein H-NS  44.12 
 
 
94 aa  89.4  2e-17  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_012855  Rpic12D_4689  histone family protein nucleoid-structuring protein H-NS  46.74 
 
 
92 aa  88.2  4e-17  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4746  histone family protein nucleoid-structuring protein H-NS  48.11 
 
 
101 aa  87.4  6e-17  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.587516  normal 
 
 
-
 
NC_008061  Bcen_5335  histone-like nucleoid-structuring protein H-NS  48.11 
 
 
101 aa  87.4  6e-17  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5527  histone family protein nucleoid-structuring protein H-NS  48.11 
 
 
101 aa  87.4  6e-17  Burkholderia cenocepacia HI2424  Bacteria  normal  0.645148  normal 
 
 
-
 
NC_010676  Bphyt_6934  histone family protein nucleoid-structuring protein H-NS  48.04 
 
 
96 aa  87  8e-17  Burkholderia phytofirmans PsJN  Bacteria  normal  0.909068  normal 
 
 
-
 
NC_008752  Aave_1150  histone family protein nucleoid-structuring protein H-NS  42 
 
 
99 aa  86.3  1e-16  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA2867  H-NS histone family protein  45.19 
 
 
98 aa  85.9  2e-16  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0084  H-NS histone family protein  45.19 
 
 
98 aa  85.9  2e-16  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3862  H-NS histone family protein  45.19 
 
 
98 aa  85.9  2e-16  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B0132  histone-like nucleoid-structuring protein H-NS  46.15 
 
 
99 aa  85.5  2e-16  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_3109  H-NS histone family protein  45.19 
 
 
98 aa  85.9  2e-16  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3934  histone family protein nucleoid-structuring protein H-NS  46.88 
 
 
91 aa  85.9  2e-16  Delftia acidovorans SPH-1  Bacteria  normal  0.222409  normal  0.184824 
 
 
-
 
NC_009076  BURPS1106A_3943  H-NS histone family protein  45.19 
 
 
98 aa  85.9  2e-16  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3442  H-NS histone family protein  45.19 
 
 
98 aa  85.9  2e-16  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1065  histone family protein nucleoid-structuring protein H-NS  45.83 
 
 
98 aa  85.5  2e-16  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1677  H-NS histone family protein  45.19 
 
 
98 aa  85.9  2e-16  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1144  histone family protein nucleoid-structuring protein H-NS  45.83 
 
 
98 aa  85.5  2e-16  Acidovorax sp. JS42  Bacteria  normal  0.439674  normal  0.582774 
 
 
-
 
NC_010002  Daci_2158  histone family protein nucleoid-structuring protein H-NS  43.14 
 
 
96 aa  85.1  3e-16  Delftia acidovorans SPH-1  Bacteria  normal  0.232102  normal  0.811955 
 
 
-
 
NC_007951  Bxe_A0112  HNS-like transcriptional regulator  46.15 
 
 
100 aa  85.1  3e-16  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.00000000000000994611  normal 
 
 
-
 
NC_010681  Bphyt_3822  histone family protein nucleoid-structuring protein H-NS  45.19 
 
 
100 aa  84.3  5e-16  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000137841  normal 
 
 
-
 
NC_010002  Daci_3476  histone family protein nucleoid-structuring protein H-NS  47.47 
 
 
97 aa  83.2  0.000000000000001  Delftia acidovorans SPH-1  Bacteria  normal  0.634664  normal 
 
 
-
 
NC_010515  Bcenmc03_5567  histone family protein nucleoid-structuring protein H-NS  51.46 
 
 
99 aa  83.2  0.000000000000001  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.000568054  normal  0.0551965 
 
 
-
 
NC_007952  Bxe_B2975  putative H-NS-like transcription regulator  46.15 
 
 
96 aa  83.2  0.000000000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_6084  histone family protein nucleoid-structuring protein H-NS  42.72 
 
 
99 aa  82.8  0.000000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  0.78955  normal 
 
 
-
 
NC_010002  Daci_4071  histone family protein nucleoid-structuring protein H-NS  44.21 
 
 
95 aa  82.4  0.000000000000002  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0737815 
 
 
-
 
NC_010552  BamMC406_5397  histone family protein nucleoid-structuring protein H-NS  47.57 
 
 
98 aa  82.4  0.000000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.48701  normal  0.976542 
 
 
-
 
NC_010622  Bphy_0116  histone family protein nucleoid-structuring protein H-NS  40.19 
 
 
100 aa  82.4  0.000000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4850  histone family protein nucleoid-structuring protein H-NS  47.57 
 
 
98 aa  82.4  0.000000000000002  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008392  Bamb_6382  histone family protein nucleoid-structuring protein H-NS  43.69 
 
 
99 aa  82  0.000000000000002  Burkholderia ambifaria AMMD  Bacteria  normal  0.193522  normal  0.0275568 
 
 
-
 
NC_007650  BTH_II1558  H-NS histone family protein  46.6 
 
 
131 aa  81.6  0.000000000000003  Burkholderia thailandensis E264  Bacteria  normal  0.752713  n/a   
 
 
-
 
NC_010524  Lcho_2290  histone family protein nucleoid-structuring protein H-NS  44.44 
 
 
112 aa  80.9  0.000000000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010515  Bcenmc03_4633  histone family protein nucleoid-structuring protein H-NS  46.73 
 
 
101 aa  80.9  0.000000000000006  Burkholderia cenocepacia MC0-3  Bacteria  unclonable  0.000000000000292632  decreased coverage  0.0000243295 
 
 
-
 
NC_007435  BURPS1710b_A1570  H-NS histone family protein  42.31 
 
 
173 aa  80.5  0.000000000000007  Burkholderia pseudomallei 1710b  Bacteria  unclonable  0.000000000103893  n/a   
 
 
-
 
NC_006349  BMAA0068  H-NS histone family protein  42.31 
 
 
99 aa  80.5  0.000000000000008  Burkholderia mallei ATCC 23344  Bacteria  unclonable  0.00000000181219  n/a   
 
 
-
 
NC_008784  BMASAVP1_1225  H-NS histone family protein  42.31 
 
 
99 aa  80.5  0.000000000000008  Burkholderia mallei SAVP1  Bacteria  decreased coverage  0.000000000000571024  n/a   
 
 
-
 
NC_010557  BamMC406_5922  histone family protein nucleoid-structuring protein H-NS  43.27 
 
 
102 aa  79.7  0.00000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  0.997127  normal  0.678214 
 
 
-
 
NC_010553  BamMC406_6777  histone family protein nucleoid-structuring protein H-NS  37.86 
 
 
99 aa  79.7  0.00000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2060  histone family protein nucleoid-structuring protein H-NS  42.16 
 
 
91 aa  79.7  0.00000000000001  Thauera sp. MZ1T  Bacteria  normal  0.0796579  n/a   
 
 
-
 
NC_009075  BURPS668_A0098  H-NS histone family protein  42.31 
 
 
108 aa  80.1  0.00000000000001  Burkholderia pseudomallei 668  Bacteria  unclonable  0.00000000000000405362  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0079  H-NS histone family protein  42.31 
 
 
108 aa  80.1  0.00000000000001  Burkholderia pseudomallei 1106a  Bacteria  unclonable  0.0000151227  n/a   
 
 
-
 
NC_010084  Bmul_0158  histone family protein nucleoid-structuring protein H-NS  50.96 
 
 
98 aa  79.3  0.00000000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008835  BMA10229_1506  H-NS histone family protein  42.31 
 
 
108 aa  80.1  0.00000000000001  Burkholderia mallei NCTC 10229  Bacteria  unclonable  0.00000000000000220305  n/a   
 
 
-
 
NC_010627  Bphy_7383  histone family protein nucleoid-structuring protein H-NS  45.45 
 
 
254 aa  78.6  0.00000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.160149 
 
 
-
 
NC_010086  Bmul_3806  histone family protein nucleoid-structuring protein H-NS  43.69 
 
 
100 aa  79  0.00000000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0101066  hitchhiker  0.00273603 
 
 
-
 
NC_010625  Bphy_6772  histone family protein nucleoid-structuring protein H-NS  42.06 
 
 
254 aa  78.2  0.00000000000004  Burkholderia phymatum STM815  Bacteria  decreased coverage  0.000000111168  normal  0.0541472 
 
 
-
 
NC_010515  Bcenmc03_4282  histone family protein nucleoid-structuring protein H-NS  42.16 
 
 
100 aa  78.2  0.00000000000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0105949  normal  0.0174683 
 
 
-
 
NC_010002  Daci_1710  histone family protein nucleoid-structuring protein H-NS  40.21 
 
 
93 aa  77.8  0.00000000000004  Delftia acidovorans SPH-1  Bacteria  normal  0.443687  normal  0.618525 
 
 
-
 
NC_008392  Bamb_6191  histone family protein nucleoid-structuring protein H-NS  43.27 
 
 
102 aa  78.2  0.00000000000004  Burkholderia ambifaria AMMD  Bacteria  normal  0.299615  normal 
 
 
-
 
NC_010553  BamMC406_6696  histone family protein nucleoid-structuring protein H-NS  46.6 
 
 
98 aa  77.8  0.00000000000005  Burkholderia ambifaria MC40-6  Bacteria  normal  0.685774  normal  0.68943 
 
 
-
 
NC_010087  Bmul_5655  histone family protein nucleoid-structuring protein H-NS  48.54 
 
 
128 aa  77.8  0.00000000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A2442  H-NS histone family protein  46.08 
 
 
131 aa  77.4  0.00000000000006  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1706  H-NS histone family protein  46.08 
 
 
104 aa  77.4  0.00000000000007  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0720  H-NS histone family protein  46.08 
 
 
96 aa  77  0.00000000000007  Burkholderia mallei ATCC 23344  Bacteria  normal  0.232457  n/a   
 
 
-
 
NC_010622  Bphy_2981  histone family protein nucleoid-structuring protein H-NS  48.11 
 
 
100 aa  77  0.00000000000007  Burkholderia phymatum STM815  Bacteria  normal  0.207499  decreased coverage  0.0000000417224 
 
 
-
 
NC_009075  BURPS668_A1247  H-NS histone family protein  46.08 
 
 
96 aa  77  0.00000000000007  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1174  H-NS histone family protein  46.08 
 
 
104 aa  77.4  0.00000000000007  Burkholderia pseudomallei 1106a  Bacteria  normal  0.354816  n/a   
 
 
-
 
NC_008835  BMA10229_0742  H-NS histone family protein  46.08 
 
 
104 aa  77.4  0.00000000000007  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0195  histone family protein nucleoid-structuring protein H-NS  40.57 
 
 
97 aa  77  0.00000000000009  Burkholderia ambifaria AMMD  Bacteria  normal  0.750004  n/a   
 
 
-
 
NC_008545  Bcen2424_6922  histone family protein nucleoid-structuring protein H-NS  47.62 
 
 
100 aa  77  0.00000000000009  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0209  histone family protein nucleoid-structuring protein H-NS  40.57 
 
 
97 aa  77  0.00000000000009  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.726678 
 
 
-
 
NC_010508  Bcenmc03_0263  histone family protein nucleoid-structuring protein H-NS  40.57 
 
 
97 aa  76.6  0.0000000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.820493 
 
 
-
 
NC_008060  Bcen_2825  histone-like nucleoid-structuring protein H-NS  40.57 
 
 
97 aa  76.6  0.0000000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0281  histone family protein nucleoid-structuring protein H-NS  40.57 
 
 
97 aa  76.6  0.0000000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  0.166699  n/a   
 
 
-
 
NC_010623  Bphy_3850  histone family protein nucleoid-structuring protein H-NS  39.83 
 
 
239 aa  75.9  0.0000000000002  Burkholderia phymatum STM815  Bacteria  decreased coverage  0.000396096  normal  0.523489 
 
 
-
 
NC_007952  Bxe_B0144  histone-like nucleoid-structuring protein H-NS  42.59 
 
 
298 aa  75.5  0.0000000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
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