More than 300 homologs were found in PanDaTox collection
for query gene Rmet_1185 on replicon NC_007973
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007973  Rmet_1185  LysR family transcriptional regulator  100 
 
 
310 aa  604  9.999999999999999e-173  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00000000537468  normal 
 
 
-
 
NC_007347  Reut_A1293  LysR family transcriptional regulator  72.49 
 
 
320 aa  442  1e-123  Ralstonia eutropha JMP134  Bacteria  decreased coverage  0.00171024  n/a   
 
 
-
 
NC_010002  Daci_1590  LysR family transcriptional regulator  69.8 
 
 
302 aa  411  1e-114  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2041  transcriptional regulator, LysR family  43.99 
 
 
301 aa  226  5.0000000000000005e-58  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.416222 
 
 
-
 
NC_010725  Mpop_1092  transcriptional regulator, LysR family  44.33 
 
 
301 aa  225  8e-58  Methylobacterium populi BJ001  Bacteria  normal  0.0509948  normal  0.0429857 
 
 
-
 
NC_010172  Mext_1722  LysR substrate-binding  43.3 
 
 
301 aa  220  1.9999999999999999e-56  Methylobacterium extorquens PA1  Bacteria  normal  0.0793479  normal 
 
 
-
 
NC_011369  Rleg2_1679  transcriptional regulator, LysR family  39.33 
 
 
316 aa  219  3.9999999999999997e-56  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.409194  normal  0.896834 
 
 
-
 
NC_012848  Rleg_4662  transcriptional regulator, LysR family  38.67 
 
 
329 aa  218  7.999999999999999e-56  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1472  LysR family transcriptional regulator  39.18 
 
 
300 aa  218  7.999999999999999e-56  Burkholderia sp. 383  Bacteria  normal  0.166956  normal  0.322339 
 
 
-
 
NC_009485  BBta_1272  LysR family transcriptional regulator  40.35 
 
 
295 aa  216  5e-55  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5409  LysR family protein  42.61 
 
 
300 aa  211  1e-53  Agrobacterium vitis S4  Bacteria  normal  0.152867  n/a   
 
 
-
 
NC_011989  Avi_3548  transcriptional regulator LysR family  38.7 
 
 
318 aa  204  2e-51  Agrobacterium vitis S4  Bacteria  normal  0.280114  n/a   
 
 
-
 
NC_010676  Bphyt_4629  transcriptional regulator, LysR family  37.55 
 
 
332 aa  171  1e-41  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.31234 
 
 
-
 
NC_010512  Bcenmc03_6694  LysR family transcriptional regulator  36.98 
 
 
321 aa  168  1e-40  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.32621 
 
 
-
 
NC_011757  Mchl_2072  transcriptional regulator, LysR family  39.27 
 
 
305 aa  167  2e-40  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0751025 
 
 
-
 
NC_008544  Bcen2424_6218  LysR family transcriptional regulator  36.98 
 
 
321 aa  165  1.0000000000000001e-39  Burkholderia cenocepacia HI2424  Bacteria  normal  decreased coverage  0.00215178 
 
 
-
 
NC_008062  Bcen_5851  LysR family transcriptional regulator  36.98 
 
 
321 aa  165  1.0000000000000001e-39  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.121988  n/a   
 
 
-
 
NC_010002  Daci_0548  LysR family transcriptional regulator  36.33 
 
 
316 aa  164  2.0000000000000002e-39  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0319  putative transcriptional regulator  36.9 
 
 
313 aa  163  4.0000000000000004e-39  Pseudomonas aeruginosa PA7  Bacteria  normal  0.404994  n/a   
 
 
-
 
NC_007509  Bcep18194_C6622  LysR family transcriptional regulator  37.99 
 
 
318 aa  162  5.0000000000000005e-39  Burkholderia sp. 383  Bacteria  normal  0.536281  normal  0.255489 
 
 
-
 
NC_010623  Bphy_3187  LysR family transcriptional regulator  31.44 
 
 
307 aa  159  6e-38  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_02870  putative transcriptional regulator  36.21 
 
 
313 aa  159  7e-38  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00238694 
 
 
-
 
NC_008786  Veis_3501  LysR family transcriptional regulator  33.71 
 
 
304 aa  155  9e-37  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.829127  normal  0.0458146 
 
 
-
 
NC_010725  Mpop_1239  transcriptional regulator, LysR family  38.91 
 
 
307 aa  155  1e-36  Methylobacterium populi BJ001  Bacteria  normal  0.138802  normal  0.188644 
 
 
-
 
NC_008786  Veis_0178  LysR family transcriptional regulator  34.48 
 
 
303 aa  153  2.9999999999999998e-36  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.758946 
 
 
-
 
NC_007347  Reut_A1656  regulatory protein, LysR:LysR, substrate-binding  32.04 
 
 
321 aa  149  7e-35  Ralstonia eutropha JMP134  Bacteria  normal  0.227102  n/a   
 
 
-
 
NC_011365  Gdia_0223  transcriptional regulator, LysR family  34.1 
 
 
308 aa  148  1.0000000000000001e-34  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.0239924 
 
 
-
 
NC_011761  AFE_0761  transcriptional regulator, LysR family  30.71 
 
 
316 aa  147  2.0000000000000003e-34  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.211674  n/a   
 
 
-
 
NC_011206  Lferr_0907  transcriptional regulator, LysR family  30.68 
 
 
302 aa  145  6e-34  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3756  LysR family transcriptional regulator  31 
 
 
301 aa  145  6e-34  Jannaschia sp. CCS1  Bacteria  normal  0.231956  normal 
 
 
-
 
NC_012791  Vapar_0711  transcriptional regulator, LysR family  34.83 
 
 
304 aa  145  8.000000000000001e-34  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3652  transcriptional regulator, LysR family  34.23 
 
 
301 aa  143  3e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0887356  n/a   
 
 
-
 
NC_011988  Avi_5425  Transcriptional regulator  34.89 
 
 
316 aa  142  7e-33  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3825  LysR family transcriptional regulator  32.81 
 
 
306 aa  141  9.999999999999999e-33  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.363475 
 
 
-
 
NC_007948  Bpro_1817  LysR family transcriptional regulator  33.98 
 
 
310 aa  142  9.999999999999999e-33  Polaromonas sp. JS666  Bacteria  normal  0.330978  hitchhiker  0.00360584 
 
 
-
 
NC_007953  Bxe_C0963  LysR family transcriptional regulator  31.16 
 
 
334 aa  140  3e-32  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_1507  LysR family transcriptional regulator  32 
 
 
317 aa  139  7.999999999999999e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2975  LysR family transcriptional regulator  33.21 
 
 
297 aa  138  1e-31  Methylobacterium sp. 4-46  Bacteria  normal  0.819316  normal  0.0269268 
 
 
-
 
NC_010681  Bphyt_1765  transcriptional regulator, LysR family  31.37 
 
 
320 aa  138  1e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.348978  normal 
 
 
-
 
NC_008786  Veis_4735  LysR family transcriptional regulator  33.83 
 
 
305 aa  137  3.0000000000000003e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.52327  normal 
 
 
-
 
NC_011369  Rleg2_4202  transcriptional regulator, LysR family  33.76 
 
 
302 aa  137  3.0000000000000003e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4729  LysR family transcriptional regulator  32.36 
 
 
317 aa  136  4e-31  Burkholderia sp. 383  Bacteria  normal  0.417319  normal  0.651457 
 
 
-
 
NC_007778  RPB_0140  LysR family transcriptional regulator  32.07 
 
 
300 aa  135  8e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.273009  normal 
 
 
-
 
NC_008709  Ping_2416  transcriptional regulator, substrate-binding of LysR family protein  25.61 
 
 
297 aa  134  9.999999999999999e-31  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.0000387203  decreased coverage  0.000000509864 
 
 
-
 
NC_010084  Bmul_1646  LysR family transcriptional regulator  31.27 
 
 
317 aa  134  1.9999999999999998e-30  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4382  LysR family transcriptional regulator  34.29 
 
 
300 aa  134  3e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_1487  LysR family transcriptional regulator  30.91 
 
 
317 aa  134  3e-30  Burkholderia ambifaria AMMD  Bacteria  normal  0.235813  n/a   
 
 
-
 
NC_010508  Bcenmc03_1568  LysR family transcriptional regulator  31.64 
 
 
317 aa  133  3.9999999999999996e-30  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.841213  normal  0.890695 
 
 
-
 
NC_010505  Mrad2831_4825  LysR family transcriptional regulator  35.51 
 
 
303 aa  133  5e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.861271  normal  0.185461 
 
 
-
 
NC_011757  Mchl_1259  transcriptional regulator, LysR family  33.06 
 
 
300 aa  132  6e-30  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5280  LysR family transcriptional regulator  31.34 
 
 
318 aa  132  6.999999999999999e-30  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6370  LysR family transcriptional regulator  30.1 
 
 
309 aa  131  1.0000000000000001e-29  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1591  LysR family transcriptional regulator  31.56 
 
 
324 aa  131  1.0000000000000001e-29  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0175342  n/a   
 
 
-
 
NC_007348  Reut_B4144  LysR family transcriptional regulator  31.58 
 
 
307 aa  130  2.0000000000000002e-29  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1111  LysR family transcriptional regulator  31.64 
 
 
317 aa  130  2.0000000000000002e-29  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_4492  transcriptional regulator, LysR family  32.05 
 
 
306 aa  130  4.0000000000000003e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.957194 
 
 
-
 
NC_010511  M446_0395  LysR family transcriptional regulator  36.09 
 
 
315 aa  129  8.000000000000001e-29  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.662274 
 
 
-
 
NC_012857  Rpic12D_4035  transcriptional regulator, LysR family  31.46 
 
 
305 aa  129  8.000000000000001e-29  Ralstonia pickettii 12D  Bacteria  normal  0.176512  normal 
 
 
-
 
NC_010678  Rpic_3921  transcriptional regulator, LysR family  31.46 
 
 
305 aa  129  8.000000000000001e-29  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4552  LysR family transcriptional regulator  33.56 
 
 
307 aa  128  1.0000000000000001e-28  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4570  LysR family transcriptional regulator  35.04 
 
 
298 aa  127  2.0000000000000002e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_3118  transcriptional regulator, LysR family  36.59 
 
 
313 aa  127  2.0000000000000002e-28  Dickeya zeae Ech1591  Bacteria  normal  0.752623  n/a   
 
 
-
 
NC_007643  Rru_A1466  LysR family transcriptional regulator  36.13 
 
 
314 aa  127  2.0000000000000002e-28  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3176  LysR family transcriptional regulator  29.93 
 
 
304 aa  127  2.0000000000000002e-28  Burkholderia phymatum STM815  Bacteria  normal  0.594001  normal 
 
 
-
 
NC_008781  Pnap_3806  LysR family transcriptional regulator  33.91 
 
 
307 aa  126  4.0000000000000003e-28  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.335856 
 
 
-
 
NC_012880  Dd703_3236  transcriptional regulator, LysR family  32.05 
 
 
307 aa  126  5e-28  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2928  transcriptional regulator, LysR family  33.66 
 
 
309 aa  126  5e-28  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0659  LysR family transcriptional regulator  31.93 
 
 
314 aa  124  1e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3568  transcriptional regulator, LysR family  30.74 
 
 
312 aa  125  1e-27  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0778  LysR family transcriptional regulator  36.26 
 
 
306 aa  123  4e-27  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A1264  LysR family transcriptional regulator  28.76 
 
 
317 aa  120  1.9999999999999998e-26  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3757  LysR family transcriptional regulator  33.79 
 
 
316 aa  120  3e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.634887 
 
 
-
 
NC_009075  BURPS668_A1340  LysR family transcriptional regulator  28.43 
 
 
317 aa  120  3.9999999999999996e-26  Burkholderia pseudomallei 668  Bacteria  normal  0.875316  n/a   
 
 
-
 
NC_012912  Dd1591_3624  transcriptional regulator, LysR family  35.61 
 
 
310 aa  119  4.9999999999999996e-26  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0513  LysR family transcriptional regulator  30.56 
 
 
302 aa  119  7e-26  Ruegeria sp. TM1040  Bacteria  normal  0.810346  normal  0.24806 
 
 
-
 
NC_009720  Xaut_3939  LysR family transcriptional regulator  34.34 
 
 
320 aa  118  9.999999999999999e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2787  LysR family transcriptional regulator  33.47 
 
 
305 aa  117  1.9999999999999998e-25  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2577  transcriptional regulator, LysR family  32.13 
 
 
297 aa  118  1.9999999999999998e-25  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.216536  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2518  LysR family regulatory protein  28.43 
 
 
311 aa  118  1.9999999999999998e-25  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1674  transcriptional regulator, LysR family  30.77 
 
 
312 aa  117  1.9999999999999998e-25  Variovorax paradoxus S110  Bacteria  normal  0.247325  n/a   
 
 
-
 
NC_012917  PC1_2216  transcriptional regulator, LysR family  29.68 
 
 
311 aa  117  1.9999999999999998e-25  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2268  regulatory protein, LysR:LysR, substrate-binding  31.42 
 
 
302 aa  117  3e-25  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.170931  normal  0.112201 
 
 
-
 
NC_011894  Mnod_5497  transcriptional regulator, LysR family  29.11 
 
 
316 aa  117  3e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.315237  n/a   
 
 
-
 
NC_007948  Bpro_1720  LysR family transcriptional regulator  28.72 
 
 
304 aa  117  3e-25  Polaromonas sp. JS666  Bacteria  normal  normal  0.501523 
 
 
-
 
NC_007348  Reut_B5504  LysR family transcriptional regulator  34.52 
 
 
300 aa  116  3.9999999999999997e-25  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_3122  LysR family transcriptional regulator  31.72 
 
 
315 aa  116  5e-25  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1912  transcriptional regulator, LysR family  32.33 
 
 
301 aa  114  2.0000000000000002e-24  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0000315182  normal  0.0709139 
 
 
-
 
NC_007005  Psyr_3526  regulatory protein, LysR:LysR, substrate-binding  30.31 
 
 
301 aa  114  2.0000000000000002e-24  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.33739  normal  0.82105 
 
 
-
 
NC_010676  Bphyt_5122  transcriptional regulator, LysR family  34.15 
 
 
298 aa  114  2.0000000000000002e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5610  LysR family transcriptional regulator  31.25 
 
 
354 aa  114  2.0000000000000002e-24  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.519955 
 
 
-
 
NC_010322  PputGB1_2243  LysR family transcriptional regulator  33.88 
 
 
302 aa  114  2.0000000000000002e-24  Pseudomonas putida GB-1  Bacteria  normal  0.839693  normal 
 
 
-
 
NC_006368  lpp0274  hypothetical protein  29.23 
 
 
294 aa  114  3e-24  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010002  Daci_2826  LysR family transcriptional regulator  30.45 
 
 
302 aa  113  3e-24  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.123766 
 
 
-
 
NC_012880  Dd703_3501  transcriptional regulator, LysR family  33.66 
 
 
310 aa  113  5e-24  Dickeya dadantii Ech703  Bacteria  normal  0.7374  n/a   
 
 
-
 
NC_009512  Pput_2069  LysR family transcriptional regulator  33.06 
 
 
295 aa  113  5e-24  Pseudomonas putida F1  Bacteria  normal  0.450351  normal 
 
 
-
 
NC_011662  Tmz1t_2253  transcriptional regulator, LysR family  31.11 
 
 
303 aa  112  6e-24  Thauera sp. MZ1T  Bacteria  normal  0.105468  n/a   
 
 
-
 
NC_011769  DvMF_1151  transcriptional regulator, LysR family  35.18 
 
 
307 aa  112  7.000000000000001e-24  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.88835 
 
 
-
 
NC_002947  PP_3660  LysR family transcriptional regulator  33.06 
 
 
295 aa  112  1.0000000000000001e-23  Pseudomonas putida KT2440  Bacteria  normal  normal  0.141797 
 
 
-
 
NC_013421  Pecwa_2528  transcriptional regulator, LysR family  28.62 
 
 
310 aa  111  1.0000000000000001e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0835  LysR family transcriptional regulator  29.41 
 
 
364 aa  111  1.0000000000000001e-23  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.643048  normal  0.134814 
 
 
-
 
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