More than 300 homologs were found in PanDaTox collection
for query gene Rmar_1860 on replicon NC_013501
Organism: Rhodothermus marinus DSM 4252



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013501  Rmar_1860  two component transcriptional regulator, LytTR family  100 
 
 
266 aa  515  1.0000000000000001e-145  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2278  LytTr DNA-binding response regulator  41.37 
 
 
280 aa  208  7e-53  Colwellia psychrerythraea 34H  Bacteria  normal  0.421967  n/a   
 
 
-
 
NC_010571  Oter_0067  LytTR family two component transcriptional regulator  45.24 
 
 
268 aa  203  2e-51  Opitutus terrae PB90-1  Bacteria  normal  0.169577  normal  0.169612 
 
 
-
 
NC_007912  Sde_0480  response regulator receiver domain-containing protein  39.71 
 
 
265 aa  193  2e-48  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_2328  LytTR family two component transcriptional regulator  45.28 
 
 
255 aa  192  4e-48  Opitutus terrae PB90-1  Bacteria  normal  0.261765  decreased coverage  0.00199939 
 
 
-
 
NC_011138  MADE_01918  putative response regulator in two-component regulatory system  37.04 
 
 
275 aa  188  8e-47  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.159199  n/a   
 
 
-
 
NC_010571  Oter_0704  LytTR family two component transcriptional regulator  39.78 
 
 
276 aa  186  2e-46  Opitutus terrae PB90-1  Bacteria  normal  normal  0.674394 
 
 
-
 
NC_009511  Swit_2974  LytTR family two component transcriptional regulator  39.46 
 
 
266 aa  183  2.0000000000000003e-45  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.318128 
 
 
-
 
NC_013037  Dfer_1004  two component transcriptional regulator, LytTR family  38.65 
 
 
257 aa  183  3e-45  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00878343  normal  0.279198 
 
 
-
 
NC_010571  Oter_2329  LytTR family two component transcriptional regulator  43.48 
 
 
255 aa  182  4.0000000000000006e-45  Opitutus terrae PB90-1  Bacteria  normal  0.0531557  decreased coverage  0.00207881 
 
 
-
 
NC_007794  Saro_0227  LytR/AlgR family transcriptional regulator  39.23 
 
 
265 aa  180  2e-44  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.312706  n/a   
 
 
-
 
NC_010571  Oter_3913  LytTR family two component transcriptional regulator  38.72 
 
 
268 aa  180  2e-44  Opitutus terrae PB90-1  Bacteria  normal  0.316099  normal 
 
 
-
 
NC_008228  Patl_2385  response regulator receiver protein  36.67 
 
 
272 aa  180  2.9999999999999997e-44  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0420  LytR/AlgR family transcriptional regulator  40.47 
 
 
317 aa  179  4e-44  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0328897  normal  0.0302219 
 
 
-
 
NC_008048  Sala_2673  response regulator receiver protein  38.4 
 
 
268 aa  176  3e-43  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.587227  normal  0.606797 
 
 
-
 
NC_010506  Swoo_4382  LytTR family two component transcriptional regulator  33.58 
 
 
273 aa  176  3e-43  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3291  LytR/AlgR family transcriptional regulator  37.35 
 
 
258 aa  172  5.999999999999999e-42  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.393667  normal 
 
 
-
 
NC_013061  Phep_3159  response regulator receiver  36.25 
 
 
242 aa  166  5e-40  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1542  LytTr DNA-binding region  35.16 
 
 
245 aa  164  1.0000000000000001e-39  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.300206 
 
 
-
 
NC_008009  Acid345_3487  LytR/AlgR family transcriptional regulator  39.84 
 
 
253 aa  164  1.0000000000000001e-39  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.76921  normal 
 
 
-
 
NC_003910  CPS_1819  LytTr DNA-binding response regulator  31.66 
 
 
260 aa  162  4.0000000000000004e-39  Colwellia psychrerythraea 34H  Bacteria  normal  0.148301  n/a   
 
 
-
 
NC_008009  Acid345_3838  LytR/AlgR family transcriptional regulator  33.72 
 
 
254 aa  162  6e-39  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.479778 
 
 
-
 
NC_003910  CPS_3718  response regulator  32.72 
 
 
275 aa  161  1e-38  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2186  two component transcriptional regulator, LytTR family  40.21 
 
 
275 aa  161  1e-38  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2172  LytR/AlgR family transcriptional regulator  37.79 
 
 
252 aa  159  4e-38  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0721488  normal  0.0255714 
 
 
-
 
NC_013132  Cpin_6586  two component transcriptional regulator, LytTR family  33.2 
 
 
246 aa  159  6e-38  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.318104  normal 
 
 
-
 
NC_009511  Swit_4495  LytTR family two component transcriptional regulator  39.04 
 
 
245 aa  158  9e-38  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.17015 
 
 
-
 
NC_007644  Moth_1964  LytR/AlgR family transcriptional regulator  36.4 
 
 
255 aa  154  2e-36  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.777054 
 
 
-
 
NC_013385  Adeg_0898  two component transcriptional regulator, LytTR family  35.5 
 
 
265 aa  148  8e-35  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3900  response regulator receiver domain-containing protein  34.66 
 
 
261 aa  148  8e-35  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0190  LytR/AlgR family transcriptional regulator  36.76 
 
 
244 aa  147  2.0000000000000003e-34  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.625509  n/a   
 
 
-
 
NC_008340  Mlg_2671  response regulator receiver protein  38.52 
 
 
243 aa  147  2.0000000000000003e-34  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  hitchhiker  0.000000000586434 
 
 
-
 
NC_010506  Swoo_1765  putative two-component response-regulatory protein YehT  31.5 
 
 
232 aa  145  6e-34  Shewanella woodyi ATCC 51908  Bacteria  normal  0.199181  hitchhiker  0.00544661 
 
 
-
 
NC_008228  Patl_1151  response regulator receiver protein  31.23 
 
 
276 aa  145  7.0000000000000006e-34  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5142  two component transcriptional regulator, LytTR family  35.89 
 
 
244 aa  144  1e-33  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.546377  normal 
 
 
-
 
NC_009483  Gura_2443  LytTR family two component transcriptional regulator  36.29 
 
 
279 aa  144  2e-33  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2697  LytR/AlgR family transcriptional regulator  36.95 
 
 
240 aa  144  2e-33  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3594  two component transcriptional regulator, LytTR family  34.96 
 
 
260 aa  144  2e-33  Spirosoma linguale DSM 74  Bacteria  normal  0.833136  normal  0.0457058 
 
 
-
 
NC_007969  Pcryo_0097  LytR/AlgR family transcriptional regulator  35.46 
 
 
245 aa  143  3e-33  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0865  putative two-component response-regulatory protein YehT  32.95 
 
 
239 aa  143  3e-33  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0031  response regulator receiver protein  39.36 
 
 
243 aa  142  4e-33  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_0930  response regulator receiver protein  40.08 
 
 
243 aa  142  5e-33  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.748451 
 
 
-
 
NC_008228  Patl_1149  response regulator receiver protein  32.82 
 
 
239 aa  142  7e-33  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02054  predicted response regulator in two-component system withYehU  32.56 
 
 
239 aa  141  9e-33  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1533  two component transcriptional regulator, LytTR family  32.56 
 
 
239 aa  141  9e-33  Escherichia coli DH1  Bacteria  normal  0.726215  n/a   
 
 
-
 
NC_009801  EcE24377A_2413  putative two-component response-regulatory protein YehT  32.56 
 
 
239 aa  141  9e-33  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02012  hypothetical protein  32.56 
 
 
239 aa  141  9e-33  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_3112  putative two-component response-regulatory protein YehT  32.56 
 
 
239 aa  141  9e-33  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.148941 
 
 
-
 
NC_009800  EcHS_A2259  putative two-component response-regulatory protein YehT  32.56 
 
 
239 aa  141  9e-33  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1522  putative two-component response-regulatory protein YehT  32.56 
 
 
239 aa  141  9e-33  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2505  putative two-component response-regulatory protein YehT  32.95 
 
 
239 aa  141  9.999999999999999e-33  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2348  putative two-component response-regulatory protein YehT  32.95 
 
 
239 aa  141  9.999999999999999e-33  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0959  putative two-component response-regulatory protein YehT  35.66 
 
 
241 aa  141  9.999999999999999e-33  Dickeya zeae Ech1591  Bacteria  normal  0.606019  n/a   
 
 
-
 
NC_007973  Rmet_1381  LytR/AlgR family transcriptional regulator  38.19 
 
 
273 aa  140  9.999999999999999e-33  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.557466 
 
 
-
 
NC_011083  SeHA_C2393  putative two-component response-regulatory protein YehT  32.95 
 
 
239 aa  141  9.999999999999999e-33  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2304  putative two-component response-regulatory protein YehT  32.95 
 
 
239 aa  141  9.999999999999999e-33  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2397  putative two-component response-regulatory protein YehT  32.95 
 
 
239 aa  141  9.999999999999999e-33  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.423362  normal 
 
 
-
 
NC_010498  EcSMS35_0919  putative two-component response-regulatory protein YehT  32.56 
 
 
239 aa  140  9.999999999999999e-33  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1761  two component transcriptional regulator, LytTR family  35.36 
 
 
251 aa  140  1.9999999999999998e-32  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_5028  LytTR family two component transcriptional regulator  34.4 
 
 
237 aa  140  1.9999999999999998e-32  Flavobacterium johnsoniae UW101  Bacteria  normal  0.967214  n/a   
 
 
-
 
NC_008345  Sfri_2434  putative two-component response-regulatory protein YehT  32.95 
 
 
236 aa  140  3e-32  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.318628  n/a   
 
 
-
 
NC_009784  VIBHAR_07024  transcriptional regulator  33.46 
 
 
263 aa  139  3.9999999999999997e-32  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012880  Dd703_0957  putative two-component response-regulatory protein YehT  36.05 
 
 
241 aa  139  3.9999999999999997e-32  Dickeya dadantii Ech703  Bacteria  normal  0.147856  n/a   
 
 
-
 
NC_013440  Hoch_4801  two component transcriptional regulator, LytTR family  38.61 
 
 
240 aa  139  4.999999999999999e-32  Haliangium ochraceum DSM 14365  Bacteria  normal  0.154299  normal 
 
 
-
 
NC_013457  VEA_000974  response regulator of the LytR/AlgR family  33.46 
 
 
263 aa  139  4.999999999999999e-32  Vibrio sp. Ex25  Bacteria  normal  0.728867  n/a   
 
 
-
 
NC_009456  VC0395_0387  response regulator  34.9 
 
 
261 aa  139  6e-32  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1527  LytTR family two component transcriptional regulator  33.2 
 
 
246 aa  138  7.999999999999999e-32  Opitutus terrae PB90-1  Bacteria  normal  0.109257  normal 
 
 
-
 
NC_010717  PXO_04138  two-component system regulatory protein  37.4 
 
 
245 aa  137  1e-31  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.739319  n/a   
 
 
-
 
NC_008009  Acid345_1001  LytR/AlgR family transcriptional regulator  35.79 
 
 
262 aa  138  1e-31  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0103069 
 
 
-
 
NC_007912  Sde_3668  two-component response regulator AlgR  37.39 
 
 
243 aa  137  2e-31  Saccharophagus degradans 2-40  Bacteria  decreased coverage  0.00827536  normal  0.334671 
 
 
-
 
NC_011899  Hore_10420  two component transcriptional regulator, LytTR family  33.46 
 
 
253 aa  137  2e-31  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000460621  n/a   
 
 
-
 
NC_013203  Apar_1323  two component transcriptional regulator, LytTR family  36.68 
 
 
237 aa  137  2e-31  Atopobium parvulum DSM 20469  Bacteria  normal  0.0540721  normal  0.0273831 
 
 
-
 
NC_009632  SaurJH1_0252  two-component response regulator  32.43 
 
 
246 aa  135  5e-31  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0246  two-component response regulator  32.43 
 
 
246 aa  135  5e-31  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_0137  two component transcriptional regulator, LytTR family  35.91 
 
 
237 aa  135  9e-31  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2723  putative two-component response-regulatory protein YehT  32.95 
 
 
239 aa  135  9e-31  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4010  two component transcriptional regulator, LytTR family  33.59 
 
 
231 aa  135  9.999999999999999e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0569074  decreased coverage  0.00157623 
 
 
-
 
NC_010424  Daud_0119  response regulator receiver protein  33.59 
 
 
249 aa  134  9.999999999999999e-31  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1658  putative two-component response-regulatory protein YehT  32.58 
 
 
236 aa  133  3e-30  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000000153786  n/a   
 
 
-
 
NC_011830  Dhaf_4408  two component transcriptional regulator, LytTR family  33.7 
 
 
268 aa  133  3e-30  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1965  response regulator receiver:LytTr DNA-binding region  36.65 
 
 
273 aa  133  3e-30  Ralstonia eutropha JMP134  Bacteria  normal  0.864475  n/a   
 
 
-
 
NC_009997  Sbal195_1695  putative two-component response-regulatory protein YehT  32.58 
 
 
236 aa  133  3e-30  Shewanella baltica OS195  Bacteria  decreased coverage  0.00000884824  normal 
 
 
-
 
NC_009052  Sbal_1673  putative two-component response-regulatory protein YehT  32.58 
 
 
236 aa  133  3e-30  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000537167  n/a   
 
 
-
 
NC_013216  Dtox_3773  two component transcriptional regulator, LytTR family  34.23 
 
 
260 aa  133  3e-30  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.10961  normal 
 
 
-
 
NC_009253  Dred_2957  response regulator receiver protein  33.33 
 
 
236 aa  133  3e-30  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00954821  n/a   
 
 
-
 
NC_011663  Sbal223_2685  putative two-component response-regulatory protein YehT  32.58 
 
 
236 aa  133  3e-30  Shewanella baltica OS223  Bacteria  normal  0.0538398  hitchhiker  0.000367908 
 
 
-
 
NC_011071  Smal_0421  two component transcriptional regulator, LytTR family  38.02 
 
 
256 aa  132  3.9999999999999996e-30  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.268274 
 
 
-
 
NC_010184  BcerKBAB4_5234  LytTR family two component transcriptional regulator  30.59 
 
 
246 aa  132  5e-30  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3221  putative two-component response-regulatory protein YehT  33.33 
 
 
238 aa  132  5e-30  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0224  putative two-component response-regulatory protein YehT  32.42 
 
 
237 aa  132  6e-30  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1130  putative two-component response-regulatory protein YehT  33.59 
 
 
238 aa  132  6.999999999999999e-30  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2594  putative two-component response-regulatory protein YehT  32.45 
 
 
236 aa  132  6.999999999999999e-30  Shewanella sp. ANA-3  Bacteria  normal  0.0103906  hitchhiker  0.00157605 
 
 
-
 
NC_010465  YPK_3358  putative two-component response-regulatory protein YehT  33.33 
 
 
238 aa  132  7.999999999999999e-30  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3485  putative two-component response-regulatory protein YehT  33.33 
 
 
238 aa  132  7.999999999999999e-30  Yersinia pestis Angola  Bacteria  normal  normal  0.159726 
 
 
-
 
NC_009438  Sputcn32_1548  putative two-component response-regulatory protein YehT  31.44 
 
 
236 aa  132  7.999999999999999e-30  Shewanella putrefaciens CN-32  Bacteria  normal  0.496368  n/a   
 
 
-
 
NC_011071  Smal_3531  two component transcriptional regulator, LytTR family  41.3 
 
 
243 aa  131  9e-30  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0036  LytR/AlgR family transcriptional regulator  39.07 
 
 
248 aa  131  1.0000000000000001e-29  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_0617  two component transcriptional regulator, LytTR family  36.72 
 
 
243 aa  131  1.0000000000000001e-29  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.23864 
 
 
-
 
NC_009831  Ssed_2883  putative two-component response-regulatory protein YehT  32.44 
 
 
236 aa  131  1.0000000000000001e-29  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000903631  unclonable  0.0000000000401288 
 
 
-
 
NC_012917  PC1_3149  putative two-component response-regulatory protein YehT  33.85 
 
 
238 aa  130  2.0000000000000002e-29  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
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