More than 300 homologs were found in PanDaTox collection
for query gene Rfer_3573 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007908  Rfer_3573  response regulator receiver domain-containing protein  100 
 
 
229 aa  466  1.0000000000000001e-131  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2177  response regulator receiver protein  37.29 
 
 
120 aa  80.1  0.00000000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3444  response regulator receiver protein  34.21 
 
 
120 aa  75.9  0.0000000000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_2563  periplasmic sensor hybrid histidine kinase  35.61 
 
 
935 aa  75.1  0.0000000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.851477 
 
 
-
 
NC_012793  GWCH70_3334  response regulator receiver protein  31.09 
 
 
120 aa  72.8  0.000000000004  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  33.5 
 
 
441 aa  72.8  0.000000000005  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  36.19 
 
 
220 aa  72.4  0.000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_009455  DehaBAV1_1106  response regulator receiver protein  33.06 
 
 
180 aa  72.4  0.000000000006  Dehalococcoides sp. BAV1  Bacteria  normal  0.0674112  n/a   
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  32.82 
 
 
441 aa  72  0.000000000007  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_011769  DvMF_1993  two component, sigma54 specific, transcriptional regulator, Fis family  42.5 
 
 
486 aa  71.6  0.000000000009  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013552  DhcVS_1078  DNA-binding response regulator  33.06 
 
 
180 aa  71.2  0.00000000001  Dehalococcoides sp. VS  Bacteria  unclonable  0.00000000000063084  n/a   
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  35.58 
 
 
227 aa  70.9  0.00000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4464  integral membrane sensor hybrid histidine kinase  35.29 
 
 
945 aa  70.5  0.00000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET1294  DNA-binding response regulator  31.4 
 
 
180 aa  69.7  0.00000000003  Dehalococcoides ethenogenes 195  Bacteria  unclonable  0.00000125664  n/a   
 
 
-
 
NC_013093  Amir_2225  two component transcriptional regulator, LuxR family  36.21 
 
 
209 aa  69.7  0.00000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0411  two component transcriptional regulator  41.86 
 
 
230 aa  69.7  0.00000000004  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  38.74 
 
 
247 aa  69.3  0.00000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_014148  Plim_3275  PAS sensor protein  34.85 
 
 
1015 aa  68.9  0.00000000005  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.991698  n/a   
 
 
-
 
NC_009523  RoseRS_0805  two component transcriptional regulator  43.02 
 
 
229 aa  69.3  0.00000000005  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_0440  two component transcriptional regulator, winged helix family  41.86 
 
 
230 aa  68.9  0.00000000006  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1385  acetoacetate metabolism regulatory protein AtoC  32.03 
 
 
460 aa  68.9  0.00000000006  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4159  two component transcriptional regulator  39.53 
 
 
230 aa  68.9  0.00000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.667277  normal  0.0359145 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  29.85 
 
 
454 aa  68.9  0.00000000006  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  38.21 
 
 
217 aa  68.6  0.00000000007  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_011145  AnaeK_0439  two component transcriptional regulator, winged helix family  41.86 
 
 
230 aa  68.9  0.00000000007  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1522  histidine kinase  50 
 
 
544 aa  68.6  0.00000000008  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2844  two component transcriptional regulator  42.31 
 
 
248 aa  68.6  0.00000000008  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0863  response regulator receiver modulated metal dependent phosphohydrolase  36.84 
 
 
351 aa  68.6  0.00000000009  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.297515  normal  0.141829 
 
 
-
 
NC_014211  Ndas_4872  two component transcriptional regulator, LuxR family  38.02 
 
 
232 aa  68.6  0.00000000009  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.247388  normal 
 
 
-
 
NC_013235  Namu_0651  two component transcriptional regulator, LuxR family  34.82 
 
 
241 aa  67.8  0.0000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  41.51 
 
 
231 aa  68.2  0.0000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  26.88 
 
 
451 aa  67.8  0.0000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2853  two component, sigma54 specific, Fis family transcriptional regulator  40 
 
 
476 aa  68.2  0.0000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  34.75 
 
 
217 aa  68.2  0.0000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_002939  GSU0811  nitrogen regulation protein NtrX  31.86 
 
 
456 aa  67  0.0000000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.686874  n/a   
 
 
-
 
NC_011658  BCAH187_A5514  sporulation initiation phosphotransferase F  29.41 
 
 
122 aa  67.4  0.0000000002  Bacillus cereus AH187  Bacteria  hitchhiker  0.000000170867  n/a   
 
 
-
 
NC_003909  BCE_5466  stage 0 sporulation protein F  29.41 
 
 
122 aa  67.4  0.0000000002  Bacillus cereus ATCC 10987  Bacteria  normal  0.0750811  n/a   
 
 
-
 
NC_005945  BAS5185  stage 0 sporulation protein F  29.41 
 
 
122 aa  67.4  0.0000000002  Bacillus anthracis str. Sterne  Bacteria  normal  0.0413406  n/a   
 
 
-
 
NC_005957  BT9727_5020  stage 0 sporulation protein F  29.41 
 
 
122 aa  67.4  0.0000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000000180816  n/a   
 
 
-
 
NC_006274  BCZK5036  stage 0 sporulation protein F  29.41 
 
 
122 aa  67.4  0.0000000002  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000000486089  n/a   
 
 
-
 
NC_013159  Svir_39200  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  35.54 
 
 
218 aa  67  0.0000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.254077 
 
 
-
 
NC_011146  Gbem_3286  two component, sigma54 specific, transcriptional regulator, Fis family  36.59 
 
 
458 aa  67.4  0.0000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5581  stage 0 sporulation protein F  29.41 
 
 
122 aa  67.4  0.0000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0132264  n/a   
 
 
-
 
NC_011725  BCB4264_A5459  sporulation initiation phosphotransferase F  29.41 
 
 
122 aa  67.4  0.0000000002  Bacillus cereus B4264  Bacteria  hitchhiker  0.000856307  n/a   
 
 
-
 
NC_011773  BCAH820_5429  sporulation initiation phosphotransferase F  29.41 
 
 
122 aa  67.4  0.0000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  6.26925e-31 
 
 
-
 
NC_009253  Dred_2891  response regulator receiver protein  30.43 
 
 
135 aa  67.4  0.0000000002  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00486665  n/a   
 
 
-
 
NC_011769  DvMF_3074  response regulator receiver modulated metal dependent phosphohydrolase  31.87 
 
 
363 aa  67.8  0.0000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009483  Gura_3740  two component, sigma-54 specific, Fis family transcriptional regulator  31.3 
 
 
454 aa  66.6  0.0000000003  Geobacter uraniireducens Rf4  Bacteria  normal  0.0840186  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5134  response regulator receiver protein  29.41 
 
 
122 aa  66.6  0.0000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0135031  n/a   
 
 
-
 
NC_010424  Daud_1738  response regulator receiver protein  37.08 
 
 
122 aa  66.2  0.0000000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0759  two component transcriptional regulator, LuxR family  35.51 
 
 
221 aa  65.9  0.0000000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.174089  n/a   
 
 
-
 
NC_010320  Teth514_1958  response regulator receiver protein  30.08 
 
 
530 aa  65.9  0.0000000005  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000471781  n/a   
 
 
-
 
NC_007952  Bxe_B1316  response regulator receiver domain-containing protein  33.61 
 
 
152 aa  65.9  0.0000000005  Burkholderia xenovorans LB400  Bacteria  normal  0.320962  normal  0.0622647 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  35.46 
 
 
367 aa  65.9  0.0000000005  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0962  two component, sigma54 specific, transcriptional regulator, Fis family  35.37 
 
 
458 aa  65.9  0.0000000005  Geobacter sp. M21  Bacteria  n/a    normal  0.277353 
 
 
-
 
NC_010571  Oter_3857  response regulator receiver protein  32.48 
 
 
128 aa  65.9  0.0000000006  Opitutus terrae PB90-1  Bacteria  normal  normal  0.183616 
 
 
-
 
NC_012856  Rpic12D_0560  response regulator receiver protein  34.91 
 
 
165 aa  65.5  0.0000000007  Ralstonia pickettii 12D  Bacteria  normal  0.595412  normal 
 
 
-
 
NC_010676  Bphyt_5291  response regulator receiver protein  33.88 
 
 
152 aa  65.5  0.0000000007  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  34.88 
 
 
225 aa  65.5  0.0000000007  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  32.65 
 
 
394 aa  65.5  0.0000000007  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_003296  RSp0980  nitrate/nitrite response regulator transcription regulator protein  43 
 
 
222 aa  65.5  0.0000000008  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1223  anti-sigma-factor antagonist  34.48 
 
 
271 aa  65.1  0.0000000008  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068542 
 
 
-
 
NC_013422  Hneap_0135  integral membrane sensor hybrid histidine kinase  41.57 
 
 
858 aa  65.1  0.0000000008  Halothiobacillus neapolitanus c2  Bacteria  normal  0.711395  n/a   
 
 
-
 
NC_013173  Dbac_1017  two component, sigma54 specific, transcriptional regulator, Fis family  35.09 
 
 
445 aa  65.1  0.0000000009  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.246569  n/a   
 
 
-
 
NC_009767  Rcas_1176  two component transcriptional regulator  41.86 
 
 
229 aa  65.1  0.0000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.149936 
 
 
-
 
NC_014210  Ndas_2024  two component transcriptional regulator, LuxR family  38.1 
 
 
220 aa  64.7  0.000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.876474  normal 
 
 
-
 
NC_009511  Swit_3860  integral membrane sensor hybrid histidine kinase  40.74 
 
 
520 aa  64.7  0.000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  36.59 
 
 
454 aa  65.1  0.000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0710  response regulator receiver domain-containing protein  31.58 
 
 
240 aa  64.7  0.000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2738  response regulator receiver domain-containing protein  36.21 
 
 
194 aa  64.7  0.000000001  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.000186206  n/a   
 
 
-
 
NC_009674  Bcer98_3857  response regulator receiver protein  28.57 
 
 
122 aa  64.7  0.000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.161717  n/a   
 
 
-
 
NC_008578  Acel_1595  two component transcriptional regulator  44.87 
 
 
227 aa  64.7  0.000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  0.526383  normal  0.570373 
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  26.9 
 
 
461 aa  64.7  0.000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  38.61 
 
 
221 aa  64.7  0.000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_010682  Rpic_0612  response regulator receiver protein  34.91 
 
 
152 aa  65.1  0.000000001  Ralstonia pickettii 12J  Bacteria  normal  0.296044  normal 
 
 
-
 
NC_009972  Haur_3391  two component transcriptional regulator  36.97 
 
 
227 aa  64.3  0.000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.141218  n/a   
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  29.77 
 
 
131 aa  64.3  0.000000001  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_009483  Gura_0085  two component, sigma-54 specific, Fis family transcriptional regulator  26.99 
 
 
452 aa  65.1  0.000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2290  two component transcriptional regulator  47.76 
 
 
224 aa  63.9  0.000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp2699  transmission activator LetA  34.15 
 
 
219 aa  63.9  0.000000002  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl2571  transmission activator LetA  34.15 
 
 
219 aa  63.9  0.000000002  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_1098  PAS:GGDEF  37.5 
 
 
705 aa  63.9  0.000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1897  two component transcriptional regulator, LuxR family  38.78 
 
 
200 aa  63.9  0.000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.299419  normal 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  38.02 
 
 
218 aa  64.3  0.000000002  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_013947  Snas_0625  two component transcriptional regulator, LuxR family  34.92 
 
 
216 aa  63.9  0.000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.732521  normal 
 
 
-
 
NC_011772  BCG9842_B5493  sporulation initiation phosphotransferase F  28.57 
 
 
122 aa  63.9  0.000000002  Bacillus cereus G9842  Bacteria  hitchhiker  0.0000162821  unclonable  2.17721e-26 
 
 
-
 
NC_011831  Cagg_1181  two component transcriptional regulator, winged helix family  44.19 
 
 
234 aa  63.5  0.000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00335068 
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  34.56 
 
 
232 aa  63.9  0.000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_009523  RoseRS_3355  two component Fis family transcriptional regulator  37.17 
 
 
122 aa  63.5  0.000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  38.02 
 
 
218 aa  64.3  0.000000002  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal 
 
 
-
 
NC_011769  DvMF_2149  two component, sigma54 specific, transcriptional regulator, Fis family  29.55 
 
 
477 aa  63.5  0.000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009675  Anae109_0644  response regulator receiver modulated CheB methylesterase  35.51 
 
 
358 aa  63.2  0.000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.173945  normal 
 
 
-
 
NC_013216  Dtox_0715  response regulator receiver protein  35.96 
 
 
121 aa  63.2  0.000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1377  two component, sigma54 specific, transcriptional regulator, Fis family  27.94 
 
 
462 aa  63.5  0.000000003  Geobacter lovleyi SZ  Bacteria  normal  0.244526  n/a   
 
 
-
 
NC_010505  Mrad2831_4812  response regulator receiver protein  35.14 
 
 
121 aa  63.2  0.000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00197217 
 
 
-
 
NC_013216  Dtox_1973  response regulator receiver protein  32.17 
 
 
127 aa  63.2  0.000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.00115006  hitchhiker  0.0000141072 
 
 
-
 
NC_008709  Ping_3328  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  31.45 
 
 
711 aa  63.5  0.000000003  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  38.1 
 
 
223 aa  62.8  0.000000004  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_013223  Dret_0868  multi-sensor signal transduction histidine kinase  32.93 
 
 
650 aa  62.8  0.000000004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2828  response regulator receiver sensor signal transduction histidine kinase  39.51 
 
 
410 aa  62.8  0.000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>