More than 300 homologs were found in PanDaTox collection
for query gene Rfer_0055 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007908  Rfer_0055  metal dependent phosphohydrolase  100 
 
 
248 aa  506  9.999999999999999e-143  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3553  response regulator receiver  57.48 
 
 
384 aa  268  5.9999999999999995e-71  Dechloromonas aromatica RCB  Bacteria  normal  0.739627  normal 
 
 
-
 
NC_013512  Sdel_0912  metal-dependent phosphohydrolase HD sub domain protein  58.45 
 
 
371 aa  265  5e-70  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0962  response regulator receiver modulated metal dependent phosphohydrolase  59.22 
 
 
377 aa  261  1e-68  Acidovorax ebreus TPSY  Bacteria  normal  0.115091  n/a   
 
 
-
 
NC_008782  Ajs_1044  response regulator receiver modulated metal dependent phosphohydrolase  58.74 
 
 
377 aa  257  1e-67  Acidovorax sp. JS42  Bacteria  normal  normal  0.0516082 
 
 
-
 
NC_008752  Aave_2064  response regulator receiver modulated metal dependent phosphohydrolase  58.25 
 
 
395 aa  257  1e-67  Acidovorax citrulli AAC00-1  Bacteria  normal  0.18463  normal  0.544249 
 
 
-
 
NC_007348  Reut_B4068  response regulator receiver  56.37 
 
 
377 aa  244  6.999999999999999e-64  Ralstonia eutropha JMP134  Bacteria  normal  0.706307  n/a   
 
 
-
 
NC_008009  Acid345_4060  response regulator receiver modulated metal dependent phosphohydrolase  53.33 
 
 
365 aa  243  1.9999999999999999e-63  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0748941 
 
 
-
 
NC_011769  DvMF_1097  response regulator receiver modulated metal dependent phosphohydrolase  54.13 
 
 
391 aa  238  5.999999999999999e-62  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.151318 
 
 
-
 
NC_009831  Ssed_2864  two-component response regulator  52.75 
 
 
383 aa  234  7e-61  Shewanella sediminis HAW-EB3  Bacteria  normal  0.384945  hitchhiker  0.000000030251 
 
 
-
 
NC_007778  RPB_2330  metal dependent phosphohydrolase  55.94 
 
 
466 aa  229  3e-59  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.541081  normal  0.158055 
 
 
-
 
NC_013223  Dret_2370  response regulator receiver modulated metal dependent phosphohydrolase  52.97 
 
 
370 aa  224  1e-57  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I2231  putative metal dependent phosphohydrolase  48.06 
 
 
440 aa  216  2e-55  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2833  response regulator receiver modulated metal dependent phosphohydrolase  50.96 
 
 
360 aa  215  7e-55  Thauera sp. MZ1T  Bacteria  normal  0.809465  n/a   
 
 
-
 
NC_009457  VC0395_A0963  response regulator  50.25 
 
 
441 aa  214  8e-55  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1904  response regulator receiver modulated metal dependent phosphohydrolase  47.06 
 
 
364 aa  211  1e-53  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.430639  normal  0.0105316 
 
 
-
 
NC_010524  Lcho_2452  response regulator receiver modulated metal dependent phosphohydrolase  51.92 
 
 
377 aa  207  9e-53  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00101758 
 
 
-
 
NC_010524  Lcho_2589  response regulator receiver modulated metal dependent phosphohydrolase  46.26 
 
 
375 aa  206  2e-52  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0322399 
 
 
-
 
NC_009831  Ssed_3778  response regulator  45.75 
 
 
629 aa  205  5e-52  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0913  hypothetical protein  48.54 
 
 
492 aa  205  6e-52  Vibrio cholerae O395  Bacteria  normal  0.512089  n/a   
 
 
-
 
NC_007519  Dde_0263  metal dependent phosphohydrolase  49.27 
 
 
579 aa  204  1e-51  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1463  response regulator receiver modulated metal dependent phosphohydrolase  50.49 
 
 
364 aa  204  2e-51  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.404054 
 
 
-
 
NC_007298  Daro_3005  response regulator receiver  48.06 
 
 
361 aa  202  4e-51  Dechloromonas aromatica RCB  Bacteria  normal  0.931132  normal 
 
 
-
 
NC_010506  Swoo_2978  response regulator receiver modulated metal dependent phosphohydrolase  46.12 
 
 
369 aa  201  8e-51  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.806511 
 
 
-
 
NC_008576  Mmc1_3072  response regulator receiver modulated metal dependent phosphohydrolase  46.41 
 
 
353 aa  201  9.999999999999999e-51  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000480818 
 
 
-
 
NC_009943  Dole_1420  putative PAS/PAC sensor protein  44.86 
 
 
543 aa  201  9.999999999999999e-51  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.108233  n/a   
 
 
-
 
NC_009943  Dole_1678  putative PAS/PAC sensor protein  45.97 
 
 
625 aa  199  1.9999999999999998e-50  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0321383  n/a   
 
 
-
 
NC_007519  Dde_1942  metal dependent phosphohydrolase  45.75 
 
 
363 aa  197  9e-50  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.284574  n/a   
 
 
-
 
NC_011883  Ddes_1054  response regulator receiver modulated metal dependent phosphohydrolase  47.03 
 
 
359 aa  196  2.0000000000000003e-49  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0881  putative PAS/PAC sensor protein  46.31 
 
 
537 aa  191  6e-48  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0632  metal dependent phosphohydrolase  45.81 
 
 
654 aa  187  1e-46  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.0000219793  n/a   
 
 
-
 
NC_009943  Dole_1421  putative PAS/PAC sensor protein  44.55 
 
 
535 aa  181  9.000000000000001e-45  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0232449  n/a   
 
 
-
 
NC_011769  DvMF_1407  metal dependent phosphohydrolase  44.71 
 
 
691 aa  181  1e-44  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_3458  response regulator receiver  43.78 
 
 
365 aa  177  1e-43  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_63210  putative two-component response regulator  40.62 
 
 
393 aa  176  4e-43  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2999  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  41.59 
 
 
361 aa  175  5e-43  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.669597 
 
 
-
 
NC_014148  Plim_0679  response regulator receiver  41.15 
 
 
337 aa  175  6e-43  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0836964  n/a   
 
 
-
 
NC_009656  PSPA7_5503  response regulator receiver  40.62 
 
 
393 aa  174  9e-43  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1387  HD domain-containing protein  42.79 
 
 
422 aa  174  1.9999999999999998e-42  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_1281  metal dependent phosphohydrolase  42.18 
 
 
421 aa  172  5.999999999999999e-42  Shewanella baltica OS223  Bacteria  normal  normal  0.246487 
 
 
-
 
NC_009997  Sbal195_3239  metal dependent phosphohydrolase  41.71 
 
 
421 aa  171  1e-41  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3086  metal dependent phosphohydrolase  41.71 
 
 
421 aa  171  1e-41  Shewanella baltica OS155  Bacteria  normal  0.688804  n/a   
 
 
-
 
NC_009665  Shew185_3096  metal dependent phosphohydrolase  41.71 
 
 
421 aa  171  1e-41  Shewanella baltica OS185  Bacteria  normal  0.789641  n/a   
 
 
-
 
NC_010814  Glov_2722  response regulator receiver modulated metal dependent phosphohydrolase  42.71 
 
 
378 aa  169  3e-41  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2455  response regulator receiver modulated metal dependent phosphohydrolase  41.35 
 
 
376 aa  169  5e-41  Magnetococcus sp. MC-1  Bacteria  normal  0.46136  normal  0.292815 
 
 
-
 
NC_013216  Dtox_4196  response regulator receiver modulated metal dependent phosphohydrolase  40.93 
 
 
350 aa  167  1e-40  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1166  metal dependent phosphohydrolase  40.7 
 
 
396 aa  167  2e-40  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1897  metal-dependent phosphohydrolase  42.66 
 
 
671 aa  164  1.0000000000000001e-39  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2300  metal dependent phosphohydrolase  38.54 
 
 
407 aa  164  1.0000000000000001e-39  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1373  response regulator receiver modulated metal dependent phosphohydrolase  39.41 
 
 
365 aa  163  2.0000000000000002e-39  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1744  response regulator receiver modulated metal dependent phosphohydrolase  42.29 
 
 
373 aa  161  8.000000000000001e-39  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1739  response regulator receiver modulated metal dependent phosphohydrolase  40.41 
 
 
362 aa  160  2e-38  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.0711596  n/a   
 
 
-
 
NC_007954  Sden_0663  response regulator receiver  41.03 
 
 
340 aa  159  3e-38  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0497  response regulator receiver modulated metal dependent phosphohydrolase  38.1 
 
 
432 aa  156  2e-37  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1882  metal dependent phosphohydrolase  39.59 
 
 
428 aa  156  3e-37  Shewanella loihica PV-4  Bacteria  normal  normal  0.898808 
 
 
-
 
NC_007298  Daro_3285  response regulator receiver  41.4 
 
 
362 aa  155  6e-37  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3723  response regulator receiver  39.06 
 
 
338 aa  155  6e-37  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2902  response regulator receiver  40.89 
 
 
350 aa  153  2e-36  Dechloromonas aromatica RCB  Bacteria  normal  0.1984  normal  0.246098 
 
 
-
 
NC_010681  Bphyt_0187  response regulator receiver modulated metal dependent phosphohydrolase  39.49 
 
 
354 aa  154  2e-36  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0125166 
 
 
-
 
NC_013173  Dbac_2325  response regulator receiver modulated metal dependent phosphohydrolase  39.13 
 
 
362 aa  153  2.9999999999999998e-36  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.663275  n/a   
 
 
-
 
NC_013173  Dbac_2017  response regulator receiver modulated metal dependent phosphohydrolase  39.6 
 
 
379 aa  152  5.9999999999999996e-36  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.98115  n/a   
 
 
-
 
NC_011004  Rpal_0148  response regulator receiver modulated metal dependent phosphohydrolase  40.74 
 
 
385 aa  152  5.9999999999999996e-36  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750781  n/a   
 
 
-
 
NC_004347  SO_4003  response regulator  39.69 
 
 
357 aa  151  8e-36  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013522  Taci_0097  putative PAS/PAC sensor protein  40.7 
 
 
319 aa  151  1e-35  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0838  response regulator receiver modulated metal dependent phosphohydrolase  39.7 
 
 
378 aa  150  1e-35  Methylobacterium sp. 4-46  Bacteria  normal  0.8404  normal 
 
 
-
 
NC_011662  Tmz1t_1183  response regulator receiver modulated metal dependent phosphohydrolase  37.63 
 
 
363 aa  150  2e-35  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  39.09 
 
 
358 aa  150  2e-35  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0007  response regulator receiver modulated metal dependent phosphohydrolase  41.24 
 
 
379 aa  149  4e-35  Dechloromonas aromatica RCB  Bacteria  normal  0.829613  normal  0.0284762 
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  39.89 
 
 
338 aa  149  4e-35  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  39.89 
 
 
338 aa  149  4e-35  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3408  response regulator receiver modulated metal dependent phosphohydrolase  36.55 
 
 
346 aa  149  4e-35  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  39.36 
 
 
338 aa  149  5e-35  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2484  metal dependent phosphohydrolase  43.46 
 
 
723 aa  149  6e-35  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_50640  response regulator with metal dependent phosphohydrolase activity (two-component)  40.21 
 
 
347 aa  147  1.0000000000000001e-34  Azotobacter vinelandii DJ  Bacteria  normal  0.121542  n/a   
 
 
-
 
NC_008228  Patl_2248  response regulator receiver modulated metal dependent phosphohydrolase  40.21 
 
 
331 aa  147  1.0000000000000001e-34  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3165  response regulator receiver modulated metal dependent phosphohydrolase  36.95 
 
 
367 aa  147  1.0000000000000001e-34  Magnetococcus sp. MC-1  Bacteria  normal  0.0569095  normal  0.0154692 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  39.36 
 
 
338 aa  147  1.0000000000000001e-34  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0150  response regulator receiver modulated metal dependent phosphohydrolase  40.45 
 
 
369 aa  147  2.0000000000000003e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.245203 
 
 
-
 
NC_010002  Daci_6015  response regulator receiver modulated metal dependent phosphohydrolase  38.66 
 
 
333 aa  147  2.0000000000000003e-34  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0206  metal-dependent phosphohydrolase  40.45 
 
 
369 aa  147  2.0000000000000003e-34  Methylobacterium extorquens PA1  Bacteria  normal  0.44114  normal  0.760724 
 
 
-
 
NC_010725  Mpop_3894  response regulator receiver modulated metal dependent phosphohydrolase  40.78 
 
 
353 aa  146  2.0000000000000003e-34  Methylobacterium populi BJ001  Bacteria  normal  0.0109719  normal  0.416002 
 
 
-
 
NC_011769  DvMF_2545  metal dependent phosphohydrolase  39.36 
 
 
269 aa  147  2.0000000000000003e-34  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008321  Shewmr4_0481  response regulator receiver modulated metal dependent phosphohydrolase  38.66 
 
 
348 aa  147  2.0000000000000003e-34  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3549  response regulator receiver modulated metal dependent phosphohydrolase  38.66 
 
 
348 aa  146  3e-34  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0215  response regulator receiver modulated metal dependent phosphohydrolase  37.44 
 
 
536 aa  145  4.0000000000000006e-34  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0860  response regulator  37.77 
 
 
339 aa  146  4.0000000000000006e-34  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009783  VIBHAR_01891  hypothetical protein  50.39 
 
 
147 aa  145  6e-34  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_0356  response regulator receiver modulated metal dependent phosphohydrolase  37.63 
 
 
360 aa  145  6e-34  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  38.74 
 
 
338 aa  145  8.000000000000001e-34  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  37.44 
 
 
340 aa  145  8.000000000000001e-34  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.129077 
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  38.74 
 
 
338 aa  145  8.000000000000001e-34  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  38.74 
 
 
338 aa  144  9e-34  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  36 
 
 
339 aa  144  9e-34  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_1041  response regulator receiver protein  41.26 
 
 
365 aa  144  1e-33  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4270  response regulator receiver modulated metal dependent phosphohydrolase  39.04 
 
 
361 aa  144  2e-33  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1613  response regulator receiver modulated metal dependent phosphohydrolase  40.78 
 
 
487 aa  143  2e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.350204  hitchhiker  0.000130728 
 
 
-
 
NC_008609  Ppro_3046  response regulator receiver modulated metal dependent phosphohydrolase  39.06 
 
 
365 aa  144  2e-33  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0429754  n/a   
 
 
-
 
NC_008740  Maqu_3676  response regulator receiver modulated metal dependent phosphohydrolase  39.89 
 
 
328 aa  144  2e-33  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  36.73 
 
 
339 aa  143  3e-33  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3334  response regulator receiver modulated metal dependent phosphohydrolase  36.92 
 
 
331 aa  143  3e-33  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
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