More than 300 homologs were found in PanDaTox collection
for query gene Rcas_4152 on replicon NC_009767
Organism: Roseiflexus castenholzii DSM 13941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009767  Rcas_4152  response regulator receiver protein  100 
 
 
122 aa  239  9e-63  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.237344 
 
 
-
 
NC_009523  RoseRS_3355  two component Fis family transcriptional regulator  89.26 
 
 
122 aa  219  7e-57  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0587  response regulator receiver protein  58.62 
 
 
121 aa  152  2e-36  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000905435  n/a   
 
 
-
 
NC_011831  Cagg_2881  response regulator receiver protein  60.5 
 
 
123 aa  147  3e-35  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000073998  normal  0.0206952 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  40.5 
 
 
454 aa  85.1  3e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  39.84 
 
 
200 aa  81.6  0.000000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  41.03 
 
 
488 aa  80.5  0.000000000000006  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_013525  Tter_1098  two component transcriptional regulator, winged helix family  39.84 
 
 
228 aa  80.5  0.000000000000007  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_3604  putative PAS/PAC sensor protein  34.71 
 
 
619 aa  80.1  0.000000000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.562878 
 
 
-
 
NC_007413  Ava_4702  response regulator receiver Signal transduction histidine kinase  38.98 
 
 
381 aa  79  0.00000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0901362  normal 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  40 
 
 
566 aa  79  0.00000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_013739  Cwoe_0228  two component transcriptional regulator, winged helix family  41.18 
 
 
223 aa  79  0.00000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.325348 
 
 
-
 
NC_011884  Cyan7425_3742  two component transcriptional regulator, winged helix family  37.82 
 
 
263 aa  79  0.00000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  37.61 
 
 
367 aa  78.6  0.00000000000002  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2637  two component transcriptional regulator, winged helix family  35 
 
 
227 aa  78.2  0.00000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_5207  winged helix family two component transcriptional regulator  36.44 
 
 
247 aa  77.8  0.00000000000004  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0812  histidine kinase  35.48 
 
 
1335 aa  77.8  0.00000000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.127825  normal 
 
 
-
 
NC_011145  AnaeK_0918  response regulator receiver protein  35.4 
 
 
458 aa  77.8  0.00000000000005  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0135  integral membrane sensor hybrid histidine kinase  39.5 
 
 
858 aa  77.4  0.00000000000006  Halothiobacillus neapolitanus c2  Bacteria  normal  0.711395  n/a   
 
 
-
 
NC_008463  PA14_20780  putative two-component response regulator  39.81 
 
 
571 aa  77.4  0.00000000000006  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.283191  normal 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  35.54 
 
 
292 aa  77.4  0.00000000000007  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_011884  Cyan7425_4555  response regulator receiver sensor signal transduction histidine kinase  36.52 
 
 
406 aa  77.4  0.00000000000007  Cyanothece sp. PCC 7425  Bacteria  normal  0.330139  normal  0.677797 
 
 
-
 
NC_007493  RSP_2437  chemotaxis response regulator, CheY1  38.6 
 
 
122 aa  77  0.00000000000008  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.365798  n/a   
 
 
-
 
NC_009656  PSPA7_1784  putative two-component response regulator  39.81 
 
 
571 aa  77  0.00000000000009  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2406  response regulator receiver domain-containing protein  36.52 
 
 
124 aa  76.6  0.0000000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4529  multi-sensor hybrid histidine kinase  35.34 
 
 
989 aa  76.3  0.0000000000001  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1101  response regulator receiver protein  38.6 
 
 
122 aa  76.6  0.0000000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.956043  normal 
 
 
-
 
NC_011729  PCC7424_3637  two component transcriptional regulator, winged helix family  36.44 
 
 
246 aa  75.9  0.0000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013161  Cyan8802_1963  two component transcriptional regulator, winged helix family  35.59 
 
 
246 aa  75.9  0.0000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.470012 
 
 
-
 
NC_007413  Ava_1498  two component transcriptional regulator  35.59 
 
 
247 aa  75.9  0.0000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.220919  normal 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  39.32 
 
 
202 aa  75.5  0.0000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_011726  PCC8801_1936  two component transcriptional regulator, winged helix family  35.59 
 
 
246 aa  75.9  0.0000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007925  RPC_4677  response regulator receiver domain-containing protein  34.19 
 
 
121 aa  75.5  0.0000000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3221  response regulator receiver modulated diguanylate cyclase  35.34 
 
 
443 aa  75.9  0.0000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0497788 
 
 
-
 
NC_014248  Aazo_0932  response regulator receiver sensor signal transduction histidine kinase  33.91 
 
 
374 aa  75.9  0.0000000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0930  response regulator receiver protein  37.72 
 
 
456 aa  75.9  0.0000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.139996  normal  0.100238 
 
 
-
 
NC_009767  Rcas_4445  two component transcriptional regulator  34.71 
 
 
229 aa  75.1  0.0000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.14031 
 
 
-
 
NC_013946  Mrub_1103  two component transcriptional regulator, winged helix family  34.17 
 
 
227 aa  75.1  0.0000000000003  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_1392  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.59 
 
 
584 aa  74.7  0.0000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  0.623748  normal 
 
 
-
 
NC_007413  Ava_1562  response regulator receiver Signal transduction histidine kinase  33.04 
 
 
369 aa  74.7  0.0000000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  0.847548  normal  0.236297 
 
 
-
 
NC_011891  A2cp1_0922  response regulator receiver protein  34.51 
 
 
459 aa  74.7  0.0000000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2694  putative PAS/PAC sensor protein  34.43 
 
 
969 aa  74.7  0.0000000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.0176534  normal 
 
 
-
 
NC_013132  Cpin_2852  histidine kinase  31.4 
 
 
1342 aa  74.7  0.0000000000004  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.0012841  normal 
 
 
-
 
NC_009565  TBFG_13797  two component transcriptional regulatory protein  33.91 
 
 
286 aa  74.7  0.0000000000004  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.173423 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  36.75 
 
 
397 aa  74.7  0.0000000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_009428  Rsph17025_1793  response regulator receiver protein  38.6 
 
 
122 aa  74.3  0.0000000000005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_2725  two component transcriptional regulator  35 
 
 
226 aa  74.3  0.0000000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0716975  n/a   
 
 
-
 
NC_008312  Tery_4937  two component transcriptional regulator  35.59 
 
 
257 aa  74.3  0.0000000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.565868 
 
 
-
 
NC_011004  Rpal_0146  response regulator receiver protein  34.19 
 
 
121 aa  74.3  0.0000000000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4657  two component transcriptional regulator, winged helix family  32.76 
 
 
240 aa  74.3  0.0000000000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  37.82 
 
 
376 aa  74.3  0.0000000000005  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_009523  RoseRS_3924  response regulator receiver modulated diguanylate cyclase  34.48 
 
 
443 aa  73.9  0.0000000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.350169  normal 
 
 
-
 
NC_009675  Anae109_3956  response regulator receiver protein  37.17 
 
 
128 aa  74.3  0.0000000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.314568 
 
 
-
 
NC_011729  PCC7424_2841  response regulator receiver modulated GAF sensor protein  40.96 
 
 
308 aa  74.3  0.0000000000006  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.585847 
 
 
-
 
NC_007333  Tfu_0257  response regulator receiver  30.25 
 
 
241 aa  73.9  0.0000000000007  Thermobifida fusca YX  Bacteria  normal  0.926332  n/a   
 
 
-
 
NC_011312  VSAL_I2575  chitin degradation sensor protein  34.75 
 
 
1127 aa  73.9  0.0000000000007  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_5184  multi-sensor hybrid histidine kinase  39.5 
 
 
939 aa  73.9  0.0000000000007  Burkholderia phymatum STM815  Bacteria  normal  0.584953  normal  0.0776559 
 
 
-
 
NC_007760  Adeh_0873  response regulator receiver domain-containing protein  34.23 
 
 
483 aa  73.6  0.0000000000008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0633299  n/a   
 
 
-
 
NC_009523  RoseRS_0761  two component transcriptional regulator  33.88 
 
 
229 aa  73.6  0.0000000000008  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.179681 
 
 
-
 
NC_008009  Acid345_2411  PAS/PAC sensor hybrid histidine kinase  34.96 
 
 
497 aa  73.6  0.0000000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2649  response regulator receiver protein  33.62 
 
 
122 aa  73.9  0.0000000000008  Thauera sp. MZ1T  Bacteria  normal  0.857048  n/a   
 
 
-
 
NC_011831  Cagg_1858  two component transcriptional regulator, winged helix family  36.89 
 
 
227 aa  73.6  0.0000000000008  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_07910  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  33.88 
 
 
239 aa  73.6  0.0000000000009  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6738  response regulator receiver, CheY1  33.04 
 
 
121 aa  73.6  0.0000000000009  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.079904  normal 
 
 
-
 
NC_009664  Krad_3036  two component transcriptional regulator, winged helix family  31.9 
 
 
273 aa  73.6  0.0000000000009  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.106658  normal 
 
 
-
 
NC_010002  Daci_0123  two component transcriptional regulator  35.83 
 
 
241 aa  72.8  0.000000000001  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  37.93 
 
 
356 aa  73.2  0.000000000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2239  adenylate/guanylate cyclase  32.48 
 
 
1156 aa  72.8  0.000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159061  normal 
 
 
-
 
NC_012917  PC1_2692  two component transcriptional regulator, winged helix family  31.9 
 
 
229 aa  72.8  0.000000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  33.33 
 
 
1180 aa  73.6  0.000000000001  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  36.67 
 
 
337 aa  73.6  0.000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_009767  Rcas_3177  adenylate/guanylate cyclase with GAF and PAS/PAC sensors  33.61 
 
 
971 aa  73.2  0.000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3620  two component transcriptional regulator, winged helix family  31.93 
 
 
239 aa  73.2  0.000000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0253056  normal  0.477246 
 
 
-
 
NC_008148  Rxyl_3017  two component transcriptional regulator  33.62 
 
 
225 aa  73.6  0.000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1836  two component AraC family transcriptional regulator  34.75 
 
 
1341 aa  73.2  0.000000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_20650  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  36.28 
 
 
231 aa  73.2  0.000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0260682  n/a   
 
 
-
 
NC_009338  Mflv_1887  two component transcriptional regulator  37.07 
 
 
231 aa  72.8  0.000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.882564  normal  0.344123 
 
 
-
 
NC_012918  GM21_2194  response regulator receiver sensor signal transduction histidine kinase  34.48 
 
 
452 aa  72.4  0.000000000002  Geobacter sp. M21  Bacteria  n/a    normal  0.514859 
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  33.93 
 
 
470 aa  72.4  0.000000000002  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_011666  Msil_1887  adenylate/guanylate cyclase  31.97 
 
 
403 aa  72.4  0.000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal  0.522729 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  33.33 
 
 
440 aa  72.4  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_007516  Syncc9605_2427  two component LuxR family transcriptional regulator  33.06 
 
 
245 aa  72.4  0.000000000002  Synechococcus sp. CC9605  Bacteria  normal  0.27075  normal 
 
 
-
 
NC_013595  Sros_6397  response regulator receiver protein  33.06 
 
 
237 aa  72.4  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.680662  normal  0.0804167 
 
 
-
 
NC_007777  Francci3_0308  two component transcriptional regulator  33.87 
 
 
239 aa  72  0.000000000002  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  34.48 
 
 
311 aa  72.4  0.000000000002  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_0921  response regulator receiver modulated serine phosphatase  33.62 
 
 
378 aa  72.4  0.000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  38.52 
 
 
440 aa  72.4  0.000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_008726  Mvan_4844  two component transcriptional regulator  37.07 
 
 
231 aa  72.8  0.000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.312171 
 
 
-
 
NC_011831  Cagg_0842  response regulator receiver protein  32.5 
 
 
390 aa  72.4  0.000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.884409  normal 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  31.67 
 
 
553 aa  72.4  0.000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_009718  Fnod_0785  two component transcriptional regulator  35.25 
 
 
229 aa  71.6  0.000000000003  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.0635827  n/a   
 
 
-
 
NC_013037  Dfer_1135  GAF sensor hybrid histidine kinase  39.17 
 
 
1142 aa  71.6  0.000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0522922  normal  0.044499 
 
 
-
 
NC_011884  Cyan7425_1062  response regulator receiver protein  29.17 
 
 
120 aa  72  0.000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.58489  hitchhiker  0.0000344775 
 
 
-
 
NC_008578  Acel_1595  two component transcriptional regulator  34.48 
 
 
227 aa  72  0.000000000003  Acidothermus cellulolyticus 11B  Bacteria  normal  0.526383  normal  0.570373 
 
 
-
 
NC_013162  Coch_1470  histidine kinase  32.79 
 
 
1376 aa  71.6  0.000000000003  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0500626  n/a   
 
 
-
 
NC_007513  Syncc9902_2107  two component LuxR family transcriptional regulator  32.23 
 
 
245 aa  71.6  0.000000000004  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0904  two component transcriptional regulator, winged helix family  33.62 
 
 
254 aa  71.2  0.000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.936287  normal  0.32173 
 
 
-
 
NC_013525  Tter_0789  response regulator receiver protein  38.79 
 
 
278 aa  71.2  0.000000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008010  Dgeo_2844  two component transcriptional regulator  33.33 
 
 
248 aa  71.2  0.000000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_4301  two component transcriptional regulator  37.07 
 
 
230 aa  71.6  0.000000000004  Mycobacterium sp. MCS  Bacteria  normal  0.681825  n/a   
 
 
-
 
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