More than 300 homologs were found in PanDaTox collection
for query gene Rcas_1880 on replicon NC_009767
Organism: Roseiflexus castenholzii DSM 13941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009767  Rcas_1880  binding-protein-dependent transport systems inner membrane component  100 
 
 
316 aa  630  1e-180  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.2607 
 
 
-
 
NC_009523  RoseRS_2895  binding-protein-dependent transport systems inner membrane component  96.84 
 
 
316 aa  616  1e-175  Roseiflexus sp. RS-1  Bacteria  normal  0.0497455  normal 
 
 
-
 
NC_011899  Hore_04280  binding-protein-dependent transport systems inner membrane component  45.45 
 
 
302 aa  245  6.999999999999999e-64  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_19290  carbohydrate ABC transporter membrane protein  45.1 
 
 
328 aa  231  2e-59  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0926617  n/a   
 
 
-
 
NC_013526  Tter_2645  binding-protein-dependent transport systems inner membrane component  46.91 
 
 
311 aa  230  3e-59  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1100  binding-protein-dependent transport systems inner membrane component  37.58 
 
 
311 aa  223  4.9999999999999996e-57  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.0016702  n/a   
 
 
-
 
NC_008010  Dgeo_2860  binding-protein-dependent transport systems inner membrane component  40.19 
 
 
322 aa  216  2.9999999999999998e-55  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.396467  n/a   
 
 
-
 
NC_012669  Bcav_0555  binding-protein-dependent transport systems inner membrane component  44.37 
 
 
328 aa  214  1.9999999999999998e-54  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.913769 
 
 
-
 
NC_007333  Tfu_0935  multiple sugar transport system permease protein  39.61 
 
 
328 aa  211  1e-53  Thermobifida fusca YX  Bacteria  normal  0.36894  n/a   
 
 
-
 
NC_013510  Tcur_1735  binding-protein-dependent transport systems inner membrane component  41.45 
 
 
328 aa  210  2e-53  Thermomonospora curvata DSM 43183  Bacteria  normal  0.152171  n/a   
 
 
-
 
NC_013595  Sros_3307  sugar transport system (permease)  41.9 
 
 
325 aa  211  2e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.175437 
 
 
-
 
NC_013131  Caci_5331  binding-protein-dependent transport systems inner membrane component  38.91 
 
 
324 aa  204  2e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.455385  normal  0.753701 
 
 
-
 
NC_009921  Franean1_5460  binding-protein-dependent transport systems inner membrane component  40.14 
 
 
334 aa  204  2e-51  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2024  binding-protein-dependent transport systems inner membrane component  41.61 
 
 
303 aa  202  4e-51  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000249122  n/a   
 
 
-
 
NC_013946  Mrub_0285  binding-protein-dependent transport systems inner membrane component  36.92 
 
 
327 aa  200  1.9999999999999998e-50  Meiothermus ruber DSM 1279  Bacteria  normal  0.0175684  normal  0.996665 
 
 
-
 
NC_009664  Krad_3565  binding-protein-dependent transport systems inner membrane component  37.46 
 
 
316 aa  200  3e-50  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.702273  normal  0.0136241 
 
 
-
 
NC_013093  Amir_1786  binding-protein-dependent transport systems inner membrane component  37.28 
 
 
335 aa  198  9e-50  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0186858  n/a   
 
 
-
 
NC_010003  Pmob_0827  binding-protein-dependent transport systems inner membrane component  39.32 
 
 
299 aa  197  1.0000000000000001e-49  Petrotoga mobilis SJ95  Bacteria  normal  0.175132  n/a   
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  36.45 
 
 
298 aa  192  6e-48  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06940  hypothetical protein  34.29 
 
 
329 aa  191  2e-47  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013947  Snas_2734  binding-protein-dependent transport systems inner membrane component  37.58 
 
 
308 aa  189  7e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.172129  normal  0.124427 
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  37.58 
 
 
300 aa  188  8e-47  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_012028  Hlac_2863  binding-protein-dependent transport systems inner membrane component  37.89 
 
 
356 aa  186  4e-46  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_011898  Ccel_2111  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
306 aa  186  5e-46  Clostridium cellulolyticum H10  Bacteria  normal  0.157384  n/a   
 
 
-
 
NC_009953  Sare_1507  binding-protein-dependent transport systems inner membrane component  41.58 
 
 
323 aa  186  5e-46  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000203032 
 
 
-
 
NC_008578  Acel_0131  binding-protein-dependent transport systems inner membrane component  37.18 
 
 
320 aa  185  7e-46  Acidothermus cellulolyticus 11B  Bacteria  normal  0.495335  normal 
 
 
-
 
NC_013521  Sked_11610  permease component of ABC-type sugar transporter  36.68 
 
 
311 aa  185  9e-46  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.117578  normal  0.102082 
 
 
-
 
NC_014165  Tbis_0841  binding-protein-dependent transporter inner membrane component  37.11 
 
 
337 aa  184  1.0000000000000001e-45  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.203798 
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  40.65 
 
 
299 aa  184  2.0000000000000003e-45  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_013521  Sked_08410  carbohydrate ABC transporter membrane protein  35.97 
 
 
379 aa  184  2.0000000000000003e-45  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.166742 
 
 
-
 
NC_009380  Strop_1558  binding-protein-dependent transport systems inner membrane component  40.55 
 
 
322 aa  184  2.0000000000000003e-45  Salinispora tropica CNB-440  Bacteria  normal  0.946878  normal  0.637369 
 
 
-
 
NC_013595  Sros_7172  sugar transport system (permease)  39.07 
 
 
323 aa  182  6e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0377247 
 
 
-
 
NC_013526  Tter_2041  binding-protein-dependent transport systems inner membrane component  37.55 
 
 
305 aa  180  2.9999999999999997e-44  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00457854  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  36.77 
 
 
309 aa  180  2.9999999999999997e-44  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  35.5 
 
 
315 aa  179  4.999999999999999e-44  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_011371  Rleg2_6525  binding-protein-dependent transport systems inner membrane component  36.43 
 
 
286 aa  179  4.999999999999999e-44  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.728774  normal  0.302995 
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  35.43 
 
 
309 aa  178  1e-43  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_012852  Rleg_6113  binding-protein-dependent transport systems inner membrane component  36.43 
 
 
286 aa  177  2e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.453278  normal 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  36.49 
 
 
295 aa  177  2e-43  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  34.77 
 
 
305 aa  177  2e-43  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0507  binding-protein-dependent transport systems inner membrane component  38.62 
 
 
299 aa  177  2e-43  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000030377  n/a   
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
313 aa  177  3e-43  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0392  binding-protein-dependent transport systems inner membrane component  40.73 
 
 
328 aa  176  3e-43  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00382252 
 
 
-
 
NC_014165  Tbis_3250  binding-protein-dependent transporter inner membrane component  34.84 
 
 
310 aa  175  8e-43  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2612  binding-protein-dependent transport systems inner membrane component  33.98 
 
 
365 aa  175  9.999999999999999e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2400  binding-protein-dependent transport systems inner membrane component  35.26 
 
 
338 aa  175  9.999999999999999e-43  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00254991 
 
 
-
 
NC_013595  Sros_6585  lactose transport system (permease)  36.68 
 
 
306 aa  174  1.9999999999999998e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6281  binding-protein-dependent transport systems inner membrane component  37.46 
 
 
309 aa  174  1.9999999999999998e-42  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  33.12 
 
 
318 aa  174  1.9999999999999998e-42  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  32.46 
 
 
321 aa  174  1.9999999999999998e-42  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  32.69 
 
 
306 aa  173  2.9999999999999996e-42  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_013411  GYMC61_2730  binding-protein-dependent transport systems inner membrane component  34.3 
 
 
300 aa  172  5.999999999999999e-42  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_2193  binding-protein-dependent transport systems inner membrane component  34.62 
 
 
306 aa  172  6.999999999999999e-42  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.692762  normal 
 
 
-
 
NC_003909  BCE_1900  sugar ABC transporter, permease protein, putative  37.8 
 
 
314 aa  172  7.999999999999999e-42  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1635  sugar ABC transporter, permease  37.8 
 
 
314 aa  172  7.999999999999999e-42  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0400  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
295 aa  172  7.999999999999999e-42  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000506379  n/a   
 
 
-
 
NC_014165  Tbis_1892  binding-protein-dependent transporter inner membrane component  41.2 
 
 
323 aa  171  1e-41  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.254377 
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  31.53 
 
 
309 aa  171  1e-41  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013411  GYMC61_0532  binding-protein-dependent transport systems inner membrane component  35.42 
 
 
311 aa  171  2e-41  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  32.05 
 
 
315 aa  169  4e-41  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0311  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
321 aa  169  6e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_1015  binding-protein-dependent transport systems inner membrane component  35.54 
 
 
292 aa  168  1e-40  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2544  binding-protein-dependent transport systems inner membrane component  40.22 
 
 
313 aa  168  1e-40  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2030  binding-protein-dependent transport systems inner membrane component  36.5 
 
 
297 aa  168  1e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.185813 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  35.09 
 
 
299 aa  167  2e-40  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2545  binding-protein-dependent transport systems inner membrane component  33.01 
 
 
316 aa  166  2.9999999999999998e-40  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.637107  normal  0.115222 
 
 
-
 
NC_011886  Achl_0400  binding-protein-dependent transport systems inner membrane component  36.23 
 
 
331 aa  166  5e-40  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  34.4 
 
 
300 aa  166  5e-40  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3963  binding-protein-dependent transport systems inner membrane component  37.67 
 
 
326 aa  166  5e-40  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0380307  normal  0.973635 
 
 
-
 
NC_010571  Oter_1749  binding-protein-dependent transport systems inner membrane component  35.33 
 
 
307 aa  166  5e-40  Opitutus terrae PB90-1  Bacteria  normal  0.45981  normal 
 
 
-
 
NC_009523  RoseRS_2819  binding-protein-dependent transport systems inner membrane component  33.55 
 
 
315 aa  166  5.9999999999999996e-40  Roseiflexus sp. RS-1  Bacteria  normal  0.0308401  normal 
 
 
-
 
NC_012669  Bcav_2838  binding-protein-dependent transport systems inner membrane component  36.59 
 
 
346 aa  166  5.9999999999999996e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.073402  normal 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  36.81 
 
 
287 aa  166  6.9999999999999995e-40  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  34.92 
 
 
320 aa  165  6.9999999999999995e-40  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_013174  Jden_1881  binding-protein-dependent transport systems inner membrane component  36.56 
 
 
334 aa  165  9e-40  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.804974 
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  38.16 
 
 
301 aa  165  1.0000000000000001e-39  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_013526  Tter_2511  binding-protein-dependent transport systems inner membrane component  36.57 
 
 
317 aa  164  2.0000000000000002e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.10809  n/a   
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  36.62 
 
 
306 aa  164  3e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  36.94 
 
 
320 aa  163  3e-39  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2846  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
313 aa  163  4.0000000000000004e-39  Serratia proteamaculans 568  Bacteria  normal  0.149421  normal  0.0970123 
 
 
-
 
NC_012669  Bcav_0647  binding-protein-dependent transport systems inner membrane component  33.88 
 
 
325 aa  162  6e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0428  binding-protein-dependent transport systems inner membrane component  32.59 
 
 
310 aa  162  8.000000000000001e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2453  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
314 aa  161  1e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000200699  n/a   
 
 
-
 
NC_008709  Ping_2010  ABC transporter substrate binding inner membrane protein  29.52 
 
 
318 aa  160  2e-38  Psychromonas ingrahamii 37  Bacteria  normal  0.360583  normal 
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
318 aa  160  2e-38  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  33.89 
 
 
313 aa  161  2e-38  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  36.88 
 
 
318 aa  160  3e-38  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_012880  Dd703_2034  binding-protein-dependent transport systems inner membrane component  37.96 
 
 
296 aa  160  3e-38  Dickeya dadantii Ech703  Bacteria  normal  0.963086  n/a   
 
 
-
 
NC_013526  Tter_2573  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
309 aa  160  3e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1443  ABC sugar transporter, inner membrane subunit  34.05 
 
 
303 aa  159  4e-38  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0903613  n/a   
 
 
-
 
NC_013946  Mrub_2809  binding-protein-dependent transport systems inner membrane component  38.14 
 
 
279 aa  159  4e-38  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.232459 
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  33.55 
 
 
314 aa  159  4e-38  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_012669  Bcav_3002  binding-protein-dependent transport systems inner membrane component  36.43 
 
 
320 aa  159  4e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3130  binding-protein-dependent transport systems inner membrane component  32.89 
 
 
314 aa  159  5e-38  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00699527 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  34.89 
 
 
307 aa  159  5e-38  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  34.89 
 
 
307 aa  159  5e-38  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_010320  Teth514_1100  binding-protein-dependent transport systems inner membrane component  35.87 
 
 
300 aa  159  5e-38  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0290  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
297 aa  159  7e-38  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  34.64 
 
 
316 aa  159  8e-38  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2009  binding-protein-dependent transport systems inner membrane component  33.79 
 
 
291 aa  158  9e-38  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
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