More than 300 homologs were found in PanDaTox collection
for query gene Rcas_1176 on replicon NC_009767
Organism: Roseiflexus castenholzii DSM 13941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009767  Rcas_1176  two component transcriptional regulator  100 
 
 
229 aa  455  1e-127  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.149936 
 
 
-
 
NC_009523  RoseRS_0805  two component transcriptional regulator  90.83 
 
 
229 aa  415  9.999999999999999e-116  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1181  two component transcriptional regulator, winged helix family  67.69 
 
 
234 aa  319  1.9999999999999998e-86  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00335068 
 
 
-
 
NC_009767  Rcas_0353  two component transcriptional regulator  55.26 
 
 
230 aa  230  2e-59  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.683455 
 
 
-
 
NC_011831  Cagg_0243  two component transcriptional regulator, winged helix family  52.86 
 
 
235 aa  223  2e-57  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0646165  normal 
 
 
-
 
NC_013235  Namu_2566  two component transcriptional regulator, winged helix family  51.8 
 
 
229 aa  216  2e-55  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000356007  hitchhiker  0.00345607 
 
 
-
 
NC_013385  Adeg_1028  two component transcriptional regulator, winged helix family  53.36 
 
 
237 aa  213  9.999999999999999e-55  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2939  response regulator receiver  52.44 
 
 
232 aa  212  4.9999999999999996e-54  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2782  two component transcriptional regulator  48.46 
 
 
231 aa  211  5.999999999999999e-54  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.92379  normal 
 
 
-
 
NC_011831  Cagg_3302  two component transcriptional regulator, winged helix family  50.22 
 
 
231 aa  210  2e-53  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000343135 
 
 
-
 
NC_008699  Noca_3782  response regulator receiver  50 
 
 
297 aa  207  7e-53  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_4233  response regulator receiver  51.12 
 
 
244 aa  206  2e-52  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3739  two component transcriptional regulator, winged helix family  48.03 
 
 
230 aa  206  2e-52  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000466515  n/a   
 
 
-
 
NC_013441  Gbro_2604  response regulator receiver  51.12 
 
 
244 aa  206  2e-52  Gordonia bronchialis DSM 43247  Bacteria  normal  0.88392  n/a   
 
 
-
 
NC_009523  RoseRS_0114  two component transcriptional regulator  55.95 
 
 
229 aa  206  3e-52  Roseiflexus sp. RS-1  Bacteria  normal  0.994086  normal 
 
 
-
 
NC_009487  SaurJH9_1549  two component transcriptional regulator  45.02 
 
 
241 aa  204  9e-52  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1580  response regulator receiver  45.02 
 
 
241 aa  204  9e-52  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_0093  two component transcriptional regulator, winged helix family  48.23 
 
 
232 aa  203  1e-51  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2709  two component transcriptional regulator, winged helix family  48.47 
 
 
236 aa  202  3e-51  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0011921  normal 
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  47.37 
 
 
235 aa  202  4e-51  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_2106  two component transcriptional regulator, winged helix family  44.49 
 
 
238 aa  202  5e-51  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1055  DNA-binding response regulator SrrA  45.02 
 
 
241 aa  201  8e-51  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_1316  two component transcriptional regulator, winged helix family  48.25 
 
 
232 aa  201  9.999999999999999e-51  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1924  two component transcriptional regulator, winged helix family  45.25 
 
 
225 aa  200  1.9999999999999998e-50  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2845  two component transcriptional regulator, winged helix family  48.07 
 
 
234 aa  200  1.9999999999999998e-50  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009718  Fnod_0785  two component transcriptional regulator  43.36 
 
 
229 aa  199  1.9999999999999998e-50  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.0635827  n/a   
 
 
-
 
NC_008346  Swol_1681  response regulator receiver protein  43.42 
 
 
227 aa  199  3e-50  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0956507  n/a   
 
 
-
 
NC_008345  Sfri_2768  two component transcriptional regulator, winged helix family protein  45.81 
 
 
229 aa  197  7.999999999999999e-50  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0176064  n/a   
 
 
-
 
NC_009077  Mjls_4523  two component transcriptional regulator  49.34 
 
 
251 aa  197  1.0000000000000001e-49  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2290  two component transcriptional regulator  49.33 
 
 
224 aa  197  2.0000000000000003e-49  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  46.93 
 
 
231 aa  196  3e-49  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1098  two component transcriptional regulator, winged helix family  48.62 
 
 
228 aa  195  4.0000000000000005e-49  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010424  Daud_1897  two component transcriptional regulator  49.33 
 
 
227 aa  196  4.0000000000000005e-49  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.151466  n/a   
 
 
-
 
NC_007954  Sden_2689  phosphate regulon transcriptional regulatory protein phoB  45.37 
 
 
229 aa  195  5.000000000000001e-49  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000627834  n/a   
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  47.14 
 
 
230 aa  194  7e-49  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_009253  Dred_2981  two component transcriptional regulator  46.88 
 
 
229 aa  194  7e-49  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.0000000201285  n/a   
 
 
-
 
NC_009767  Rcas_2487  two component transcriptional regulator  48.89 
 
 
224 aa  194  7e-49  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.431556  normal 
 
 
-
 
NC_012034  Athe_1456  two component transcriptional regulator, winged helix family  44.14 
 
 
223 aa  194  8.000000000000001e-49  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.000183373  n/a   
 
 
-
 
NC_013205  Aaci_1728  two component transcriptional regulator, winged helix family  48.66 
 
 
233 aa  194  1e-48  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1944  two component transcriptional regulator  45.3 
 
 
238 aa  194  1e-48  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1367  two component transcriptional regulator, winged helix family  46.4 
 
 
230 aa  194  1e-48  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000177207  n/a   
 
 
-
 
NC_009338  Mflv_0893  two component transcriptional regulator  48.02 
 
 
251 aa  193  2e-48  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2693  two component transcriptional regulator  47.77 
 
 
226 aa  193  2e-48  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.575064 
 
 
-
 
NC_008146  Mmcs_1439  two component transcriptional regulator  47.14 
 
 
265 aa  193  2e-48  Mycobacterium sp. MCS  Bacteria  normal  0.293954  n/a   
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  48.46 
 
 
236 aa  193  2e-48  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_009338  Mflv_3887  two component transcriptional regulator  48.9 
 
 
251 aa  193  2e-48  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.243105 
 
 
-
 
NC_009253  Dred_1903  two component transcriptional regulator  45.09 
 
 
230 aa  193  2e-48  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1457  two component transcriptional regulator  47.14 
 
 
265 aa  193  2e-48  Mycobacterium sp. KMS  Bacteria  normal  normal  0.701993 
 
 
-
 
NC_009380  Strop_0624  two component transcriptional regulator  46.22 
 
 
240 aa  192  3e-48  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2981  two component transcriptional regulator PhoB, winged helix family  44.93 
 
 
229 aa  192  4e-48  Shewanella baltica OS223  Bacteria  hitchhiker  0.000000220801  hitchhiker  0.00121997 
 
 
-
 
NC_009487  SaurJH9_1750  two component transcriptional regulator  44.74 
 
 
234 aa  192  4e-48  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18360  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  44.84 
 
 
239 aa  192  4e-48  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1784  alkaline phosphatase synthesis transcriptional regulatory protein  44.74 
 
 
234 aa  192  4e-48  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.561076  n/a   
 
 
-
 
NC_009997  Sbal195_1403  two component transcriptional regulator  44.93 
 
 
229 aa  192  4e-48  Shewanella baltica OS195  Bacteria  hitchhiker  0.00109837  normal  0.0219543 
 
 
-
 
NC_009665  Shew185_1364  two component transcriptional regulator  44.93 
 
 
229 aa  192  4e-48  Shewanella baltica OS185  Bacteria  hitchhiker  0.0000657343  n/a   
 
 
-
 
NC_008699  Noca_0312  response regulator receiver  47.09 
 
 
233 aa  192  4e-48  Nocardioides sp. JS614  Bacteria  normal  0.0102436  n/a   
 
 
-
 
NC_009052  Sbal_1378  two component transcriptional regulator  44.93 
 
 
229 aa  192  4e-48  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000291119  n/a   
 
 
-
 
NC_004347  SO_1558  phosphate regulon response regulator PhoB  44.93 
 
 
239 aa  191  6e-48  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  47.09 
 
 
229 aa  191  7e-48  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_008321  Shewmr4_2709  two component transcriptional regulator  44.93 
 
 
229 aa  191  7e-48  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00000407229  decreased coverage  0.000000263688 
 
 
-
 
NC_008322  Shewmr7_2777  two component transcriptional regulator  44.93 
 
 
229 aa  191  7e-48  Shewanella sp. MR-7  Bacteria  unclonable  0.000000628627  decreased coverage  0.000208697 
 
 
-
 
NC_008577  Shewana3_2879  two component transcriptional regulator  44.93 
 
 
229 aa  191  7e-48  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000143261  hitchhiker  0.00000615281 
 
 
-
 
NC_009092  Shew_2749  two component transcriptional regulator  44.93 
 
 
241 aa  191  7e-48  Shewanella loihica PV-4  Bacteria  decreased coverage  0.00000593879  unclonable  0.00000330773 
 
 
-
 
NC_009972  Haur_4663  two component transcriptional regulator  46.46 
 
 
232 aa  191  9e-48  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0644  two component transcriptional regulator, winged helix family  44.39 
 
 
236 aa  191  1e-47  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4914  two component transcriptional regulator  44.39 
 
 
238 aa  191  1e-47  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.095278 
 
 
-
 
NC_012793  GWCH70_2675  two component transcriptional regulator, winged helix family  44.93 
 
 
234 aa  191  1e-47  Geobacillus sp. WCH70  Bacteria  normal  0.661044  n/a   
 
 
-
 
NC_008726  Mvan_3674  two component transcriptional regulator  47.37 
 
 
246 aa  190  1e-47  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.027909  normal 
 
 
-
 
NC_011830  Dhaf_0940  two component transcriptional regulator, winged helix family  44.59 
 
 
237 aa  190  1e-47  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.324642  n/a   
 
 
-
 
NC_014248  Aazo_2678  winged helix family two component transcriptional regulator  44.84 
 
 
240 aa  191  1e-47  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4566  two component transcriptional regulator  48.02 
 
 
248 aa  190  1e-47  Mycobacterium sp. JLS  Bacteria  normal  0.611556  normal 
 
 
-
 
NC_009972  Haur_3061  two component transcriptional regulator  48.28 
 
 
227 aa  190  2e-47  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.799336  n/a   
 
 
-
 
NC_007498  Pcar_0653  two-component response regulator PhoB  48.44 
 
 
230 aa  190  2e-47  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.131558  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4419  two component transcriptional regulator  45.49 
 
 
239 aa  190  2e-47  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2969  two component transcriptional regulator  44.49 
 
 
229 aa  190  2e-47  Shewanella pealeana ATCC 700345  Bacteria  decreased coverage  0.000000855765  n/a   
 
 
-
 
NC_009438  Sputcn32_1296  two component transcriptional regulator  44.49 
 
 
229 aa  189  2e-47  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000460678  n/a   
 
 
-
 
NC_010506  Swoo_3452  two component transcriptional regulator  44.93 
 
 
229 aa  190  2e-47  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00686704  hitchhiker  0.000158375 
 
 
-
 
NC_002939  GSU1102  DNA-binding response regulator  48.66 
 
 
225 aa  189  2.9999999999999997e-47  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3303  two component transcriptional regulator  44.05 
 
 
229 aa  189  2.9999999999999997e-47  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000702519  hitchhiker  0.00000106408 
 
 
-
 
NC_011884  Cyan7425_1085  two component transcriptional regulator, winged helix family  45.34 
 
 
235 aa  189  2.9999999999999997e-47  Cyanothece sp. PCC 7425  Bacteria  normal  0.224574  normal 
 
 
-
 
NC_013169  Ksed_04920  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  44.84 
 
 
222 aa  189  2.9999999999999997e-47  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  44.83 
 
 
231 aa  189  4e-47  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000430064  n/a   
 
 
-
 
NC_003909  BCE_4720  DNA-binding response regulator PhoP  44.83 
 
 
239 aa  189  4e-47  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  46.43 
 
 
236 aa  189  4e-47  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_007912  Sde_3703  two component transcriptional regulator  44.21 
 
 
232 aa  189  4e-47  Saccharophagus degradans 2-40  Bacteria  normal  0.230236  normal  0.0884672 
 
 
-
 
NC_008146  Mmcs_2905  two component transcriptional regulator  47.79 
 
 
263 aa  189  4e-47  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2949  two component transcriptional regulator  47.79 
 
 
263 aa  189  4e-47  Mycobacterium sp. KMS  Bacteria  normal  0.271765  normal 
 
 
-
 
NC_009077  Mjls_2935  two component transcriptional regulator  47.79 
 
 
263 aa  189  4e-47  Mycobacterium sp. JLS  Bacteria  normal  normal  0.193911 
 
 
-
 
NC_005945  BAS4484  DNA-binding response regulator PhoP  44.83 
 
 
239 aa  188  5e-47  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4319  alkaline phosphatase synthesis response regulator  44.83 
 
 
239 aa  188  5e-47  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4330  alkaline phosphatase synthesis response regulator  44.83 
 
 
239 aa  188  5e-47  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  43.91 
 
 
235 aa  188  5e-47  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_011773  BCAH820_4704  DNA-binding response regulator PhoP  44.83 
 
 
239 aa  188  5e-47  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000673192 
 
 
-
 
NC_007530  GBAA_4833  DNA-binding response regulator PhoP  44.83 
 
 
239 aa  188  5e-47  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0982965  n/a   
 
 
-
 
NC_011658  BCAH187_A4714  DNA-binding response regulator PhoP  44.83 
 
 
239 aa  188  5e-47  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009339  Mflv_5309  two component transcriptional regulator  46.49 
 
 
246 aa  188  5e-47  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.383621  normal  0.611504 
 
 
-
 
NC_008703  Mkms_5700  two component transcriptional regulator  46.49 
 
 
246 aa  188  5e-47  Mycobacterium sp. KMS  Bacteria  normal  0.663569  normal  0.593468 
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  43.91 
 
 
235 aa  188  7e-47  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  44.25 
 
 
232 aa  188  7e-47  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_2838  two component transcriptional regulator  48.02 
 
 
251 aa  188  8e-47  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.692986  normal  0.315208 
 
 
-
 
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