More than 300 homologs were found in PanDaTox collection
for query gene Rcas_0353 on replicon NC_009767
Organism: Roseiflexus castenholzii DSM 13941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009767  Rcas_0353  two component transcriptional regulator  100 
 
 
230 aa  455  1e-127  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.683455 
 
 
-
 
NC_009523  RoseRS_0114  two component transcriptional regulator  93.48 
 
 
229 aa  400  1e-111  Roseiflexus sp. RS-1  Bacteria  normal  0.994086  normal 
 
 
-
 
NC_011831  Cagg_0243  two component transcriptional regulator, winged helix family  66.81 
 
 
235 aa  305  5.0000000000000004e-82  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0646165  normal 
 
 
-
 
NC_009767  Rcas_2782  two component transcriptional regulator  60.09 
 
 
231 aa  261  6e-69  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.92379  normal 
 
 
-
 
NC_013235  Namu_2566  two component transcriptional regulator, winged helix family  59.29 
 
 
229 aa  251  7e-66  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000356007  hitchhiker  0.00345607 
 
 
-
 
NC_011831  Cagg_3302  two component transcriptional regulator, winged helix family  54.67 
 
 
231 aa  234  9e-61  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000343135 
 
 
-
 
NC_009767  Rcas_1176  two component transcriptional regulator  55.26 
 
 
229 aa  230  2e-59  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.149936 
 
 
-
 
NC_008699  Noca_2939  response regulator receiver  57.21 
 
 
232 aa  229  3e-59  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  48.91 
 
 
232 aa  229  3e-59  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1944  two component transcriptional regulator  49.14 
 
 
238 aa  227  1e-58  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1181  two component transcriptional regulator, winged helix family  54.82 
 
 
234 aa  227  1e-58  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00335068 
 
 
-
 
NC_009523  RoseRS_0805  two component transcriptional regulator  54.82 
 
 
229 aa  226  2e-58  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  50.44 
 
 
231 aa  225  4e-58  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000430064  n/a   
 
 
-
 
NC_010320  Teth514_0766  two component transcriptional regulator  50 
 
 
231 aa  225  5.0000000000000005e-58  Thermoanaerobacter sp. X514  Bacteria  normal  0.585906  n/a   
 
 
-
 
NC_009972  Haur_4663  two component transcriptional regulator  54.39 
 
 
232 aa  224  7e-58  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0987  two component transcriptional regulator, winged helix family  56.33 
 
 
233 aa  224  8e-58  Rhodothermus marinus DSM 4252  Bacteria  normal  0.195539  n/a   
 
 
-
 
NC_011884  Cyan7425_1085  two component transcriptional regulator, winged helix family  49.36 
 
 
235 aa  223  2e-57  Cyanothece sp. PCC 7425  Bacteria  normal  0.224574  normal 
 
 
-
 
NC_003909  BCE_4720  DNA-binding response regulator PhoP  52.79 
 
 
239 aa  223  3e-57  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4699  DNA-binding response regulator PhoP  53.22 
 
 
239 aa  222  3e-57  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0378  two component transcriptional regulator  51.08 
 
 
234 aa  223  3e-57  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0539  DNA-binding response regulator PhoP  53.22 
 
 
239 aa  222  3e-57  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000130788 
 
 
-
 
NC_005945  BAS4484  DNA-binding response regulator PhoP  52.79 
 
 
239 aa  222  4e-57  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4319  alkaline phosphatase synthesis response regulator  52.79 
 
 
239 aa  222  4e-57  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4330  alkaline phosphatase synthesis response regulator  52.79 
 
 
239 aa  222  4e-57  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4714  DNA-binding response regulator PhoP  52.79 
 
 
239 aa  222  4e-57  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4833  DNA-binding response regulator PhoP  52.79 
 
 
239 aa  222  4e-57  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0982965  n/a   
 
 
-
 
NC_011773  BCAH820_4704  DNA-binding response regulator PhoP  52.79 
 
 
239 aa  222  4e-57  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000673192 
 
 
-
 
NC_011729  PCC7424_2845  two component transcriptional regulator, winged helix family  50.22 
 
 
234 aa  221  7e-57  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008726  Mvan_3674  two component transcriptional regulator  52.17 
 
 
246 aa  221  8e-57  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.027909  normal 
 
 
-
 
NC_007413  Ava_4914  two component transcriptional regulator  50.88 
 
 
238 aa  220  9.999999999999999e-57  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.095278 
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  54.02 
 
 
229 aa  220  9.999999999999999e-57  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_010184  BcerKBAB4_4419  two component transcriptional regulator  52.36 
 
 
239 aa  220  9.999999999999999e-57  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  52.81 
 
 
235 aa  220  9.999999999999999e-57  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_014248  Aazo_2678  winged helix family two component transcriptional regulator  51.1 
 
 
240 aa  219  1.9999999999999999e-56  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  52.19 
 
 
232 aa  218  3.9999999999999997e-56  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3274  two component transcriptional regulator  52.79 
 
 
238 aa  218  7e-56  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3782  response regulator receiver  53.51 
 
 
297 aa  218  7e-56  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2867  two component transcriptional regulator, winged helix family  50.85 
 
 
233 aa  218  7e-56  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  49.57 
 
 
230 aa  216  2e-55  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_014158  Tpau_0093  two component transcriptional regulator, winged helix family  52.44 
 
 
232 aa  216  2e-55  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4523  two component transcriptional regulator  52.4 
 
 
251 aa  216  2e-55  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2709  two component transcriptional regulator, winged helix family  53.22 
 
 
236 aa  216  2.9999999999999998e-55  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0011921  normal 
 
 
-
 
NC_008699  Noca_0312  response regulator receiver  52.47 
 
 
233 aa  216  2.9999999999999998e-55  Nocardioides sp. JS614  Bacteria  normal  0.0102436  n/a   
 
 
-
 
NC_013205  Aaci_2922  two component transcriptional regulator, winged helix family  52.38 
 
 
230 aa  216  2.9999999999999998e-55  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.221617  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  47.79 
 
 
235 aa  215  5e-55  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  47.79 
 
 
235 aa  214  7e-55  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_012793  GWCH70_2675  two component transcriptional regulator, winged helix family  49.78 
 
 
234 aa  214  8e-55  Geobacillus sp. WCH70  Bacteria  normal  0.661044  n/a   
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  47.79 
 
 
235 aa  214  8e-55  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  49.57 
 
 
235 aa  214  9e-55  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1903  two component transcriptional regulator  47.77 
 
 
230 aa  214  9.999999999999999e-55  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  47.79 
 
 
235 aa  213  9.999999999999999e-55  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  47.79 
 
 
235 aa  213  9.999999999999999e-55  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  47.79 
 
 
235 aa  213  9.999999999999999e-55  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  47.79 
 
 
235 aa  213  9.999999999999999e-55  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  47.79 
 
 
235 aa  213  9.999999999999999e-55  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  47.79 
 
 
235 aa  213  9.999999999999999e-55  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  47.79 
 
 
235 aa  213  9.999999999999999e-55  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_009339  Mflv_5309  two component transcriptional regulator  51.75 
 
 
246 aa  214  9.999999999999999e-55  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.383621  normal  0.611504 
 
 
-
 
NC_008703  Mkms_5700  two component transcriptional regulator  51.75 
 
 
246 aa  214  9.999999999999999e-55  Mycobacterium sp. KMS  Bacteria  normal  0.663569  normal  0.593468 
 
 
-
 
NC_011898  Ccel_2106  two component transcriptional regulator, winged helix family  46.49 
 
 
238 aa  213  9.999999999999999e-55  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  47.79 
 
 
235 aa  214  9.999999999999999e-55  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_013385  Adeg_1897  two component transcriptional regulator, winged helix family  50 
 
 
229 aa  213  1.9999999999999998e-54  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0088  two component transcriptional regulator  49.12 
 
 
228 aa  213  1.9999999999999998e-54  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0978  two component transcriptional regulator  51.77 
 
 
321 aa  212  4.9999999999999996e-54  Frankia sp. CcI3  Bacteria  normal  0.323902  normal 
 
 
-
 
NC_014151  Cfla_3537  two component transcriptional regulator, winged helix family  51.79 
 
 
237 aa  211  4.9999999999999996e-54  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.555413 
 
 
-
 
NC_007604  Synpcc7942_0556  two component transcriptional regulator  49.78 
 
 
237 aa  211  7e-54  Synechococcus elongatus PCC 7942  Bacteria  normal  0.451756  normal 
 
 
-
 
NC_013441  Gbro_2604  response regulator receiver  51.57 
 
 
244 aa  211  7.999999999999999e-54  Gordonia bronchialis DSM 43247  Bacteria  normal  0.88392  n/a   
 
 
-
 
NC_013441  Gbro_4233  response regulator receiver  51.57 
 
 
244 aa  211  7.999999999999999e-54  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1673  two component transcriptional regulator, winged helix family  46.9 
 
 
233 aa  211  1e-53  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3070  two component transcriptional regulator  51.75 
 
 
230 aa  210  1e-53  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00000463151 
 
 
-
 
NC_009380  Strop_0624  two component transcriptional regulator  52.23 
 
 
240 aa  210  1e-53  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013552  DhcVS_143  DNA-binding response regulator, two-component system, OmpR family  47.77 
 
 
256 aa  210  2e-53  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  51.75 
 
 
231 aa  210  2e-53  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2903  two component transcriptional regulator, winged helix family  44.98 
 
 
234 aa  209  2e-53  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1756  two component transcriptional regulator, winged helix family  45.37 
 
 
230 aa  209  3e-53  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.769657  n/a   
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  48.91 
 
 
236 aa  209  3e-53  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_009674  Bcer98_0264  two component transcriptional regulator  45.81 
 
 
238 aa  209  3e-53  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.392693  n/a   
 
 
-
 
NC_013205  Aaci_2570  two component transcriptional regulator, winged helix family  50.22 
 
 
239 aa  209  4e-53  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  51.09 
 
 
231 aa  208  5e-53  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  48.02 
 
 
239 aa  208  6e-53  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  48.02 
 
 
239 aa  208  6e-53  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_005945  BAS2385  DNA-binding response regulator  43.42 
 
 
231 aa  208  7e-53  Bacillus anthracis str. Sterne  Bacteria  normal  0.534853  n/a   
 
 
-
 
NC_005957  BT9727_2341  DNA-binding response regulator  43.42 
 
 
231 aa  208  7e-53  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000000166477  n/a   
 
 
-
 
NC_007530  GBAA_2561  DNA-binding response regulator  43.42 
 
 
231 aa  208  7e-53  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.630654  n/a   
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  48.47 
 
 
239 aa  208  7e-53  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_011773  BCAH820_2574  DNA-binding response regulator  43.42 
 
 
231 aa  208  7e-53  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000040017 
 
 
-
 
NC_002936  DET1058  DNA-binding response regulator  46.49 
 
 
227 aa  207  8e-53  Dehalococcoides ethenogenes 195  Bacteria  decreased coverage  0.000187393  n/a   
 
 
-
 
NC_011830  Dhaf_1367  two component transcriptional regulator, winged helix family  50.44 
 
 
230 aa  207  8e-53  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000177207  n/a   
 
 
-
 
NC_011899  Hore_04710  two component transcriptional regulator, winged helix family  46.52 
 
 
237 aa  207  9e-53  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_926  two-component system, OmpR family, response regulator  47.37 
 
 
227 aa  207  9e-53  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.00200634  n/a   
 
 
-
 
NC_002936  DET0135  DNA-binding response regulator  47.32 
 
 
230 aa  207  1e-52  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_20650  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  50 
 
 
231 aa  207  1e-52  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0260682  n/a   
 
 
-
 
NC_011658  BCAH187_A2617  DNA-binding response regulator  43.42 
 
 
231 aa  207  1e-52  Bacillus cereus AH187  Bacteria  normal  0.993672  n/a   
 
 
-
 
NC_008726  Mvan_1834  two component transcriptional regulator  50.22 
 
 
251 aa  207  1e-52  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.131317  normal  0.194802 
 
 
-
 
NC_002976  SERP1256  alkaline phosphatase synthesis transcriptional regulatory protein PhoP  48.29 
 
 
236 aa  206  2e-52  Staphylococcus epidermidis RP62A  Bacteria  normal  0.577358  n/a   
 
 
-
 
NC_003909  BCE_2564  DNA-binding response regulator  42.98 
 
 
231 aa  206  2e-52  Bacillus cereus ATCC 10987  Bacteria  normal  0.0589521  n/a   
 
 
-
 
NC_011898  Ccel_1546  two component transcriptional regulator, winged helix family  45.33 
 
 
237 aa  207  2e-52  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000115937  n/a   
 
 
-
 
NC_013530  Xcel_2485  two component transcriptional regulator, winged helix family  54.35 
 
 
243 aa  206  3e-52  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0475  two component transcriptional regulator, winged helix family  47.83 
 
 
234 aa  206  3e-52  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0489  two component transcriptional regulator, winged helix family  47.83 
 
 
234 aa  206  3e-52  Cyanothece sp. PCC 8802  Bacteria  normal  0.210896  normal  0.371413 
 
 
-
 
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