More than 300 homologs were found in PanDaTox collection
for query gene RSc0271 on replicon NC_003295
Organism: Ralstonia solanacearum GMI1000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003295  RSc0271  hypothetical protein  100 
 
 
229 aa  459  9.999999999999999e-129  Ralstonia solanacearum GMI1000  Bacteria  normal  0.586518  normal 
 
 
-
 
NC_010682  Rpic_0122  HAD-superfamily hydrolase, subfamily IA, variant 3  82.53 
 
 
229 aa  378  1e-104  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0130  HAD-superfamily hydrolase, subfamily IA, variant 3  82.82 
 
 
232 aa  377  1e-103  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0142  HAD family hydrolase  67.28 
 
 
235 aa  294  7e-79  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0110  HAD family hydrolase  61.47 
 
 
227 aa  261  4e-69  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3047  HAD-superfamily hydrolase, subfamily IA, variant 3  50.91 
 
 
226 aa  195  4.0000000000000005e-49  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5978  HAD family hydrolase  49.55 
 
 
230 aa  196  4.0000000000000005e-49  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.367832 
 
 
-
 
NC_012791  Vapar_4727  HAD-superfamily hydrolase, subfamily IA, variant 3  50.68 
 
 
230 aa  191  6e-48  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1631  HAD family hydrolase  52.49 
 
 
230 aa  187  8e-47  Burkholderia xenovorans LB400  Bacteria  normal  0.318646  normal  0.223643 
 
 
-
 
NC_008782  Ajs_0330  HAD family hydrolase  50 
 
 
225 aa  187  8e-47  Acidovorax sp. JS42  Bacteria  normal  normal  0.438813 
 
 
-
 
NC_010676  Bphyt_5016  HAD-superfamily hydrolase, subfamily IA, variant 3  52.94 
 
 
230 aa  180  2e-44  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0704684  normal  0.049198 
 
 
-
 
NC_007604  Synpcc7942_0085  HAD family hydrolase  48.37 
 
 
228 aa  180  2e-44  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3773  HAD family hydrolase  49.77 
 
 
220 aa  179  4e-44  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5532  HAD-superfamily hydrolase, subfamily IA, variant 3  47.42 
 
 
214 aa  174  9e-43  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0467  HAD family hydrolase  49.77 
 
 
219 aa  173  1.9999999999999998e-42  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.530029  normal 
 
 
-
 
NC_010625  Bphy_5788  HAD family hydrolase  47.06 
 
 
227 aa  172  5.999999999999999e-42  Burkholderia phymatum STM815  Bacteria  normal  normal  0.438539 
 
 
-
 
NC_007413  Ava_0109  HAD family hydrolase  39.38 
 
 
223 aa  169  2e-41  Anabaena variabilis ATCC 29413  Bacteria  normal  decreased coverage  0.00453013 
 
 
-
 
NC_007947  Mfla_1543  HAD family hydrolase  42.33 
 
 
218 aa  156  3e-37  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.290377 
 
 
-
 
NC_009654  Mmwyl1_2542  HAD family hydrolase  39.07 
 
 
214 aa  152  4e-36  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.214098 
 
 
-
 
NC_007802  Jann_0442  HAD family hydrolase  39.91 
 
 
218 aa  152  5e-36  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0045  putative haloacid dehalogenase-like hydrolase  38.91 
 
 
232 aa  151  8e-36  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.605496  normal  0.617373 
 
 
-
 
NC_007925  RPC_0467  HAD family hydrolase  42.6 
 
 
219 aa  149  2e-35  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.577769 
 
 
-
 
NC_013739  Cwoe_3250  HAD-superfamily hydrolase, subfamily IA, variant 3  41.67 
 
 
223 aa  148  7e-35  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.313411 
 
 
-
 
NC_008009  Acid345_0996  HAD family hydrolase  39.37 
 
 
219 aa  145  4.0000000000000006e-34  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0106068 
 
 
-
 
NC_007493  RSP_0902  hydrolase, haloacid dehalogenase-like hydrolase  43.58 
 
 
214 aa  145  6e-34  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4360  HAD family hydrolase  50.8 
 
 
241 aa  144  1e-33  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0589  HAD family hydrolase  41.55 
 
 
217 aa  144  2e-33  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4509  HAD family hydrolase  40.64 
 
 
225 aa  144  2e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2561  HAD family hydrolase  43.58 
 
 
214 aa  142  3e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.467395  normal  0.978444 
 
 
-
 
NC_007958  RPD_0243  HAD family hydrolase  41.94 
 
 
217 aa  142  4e-33  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2077  HAD-superfamily hydrolase, subfamily IA, variant 3  44.34 
 
 
231 aa  141  9.999999999999999e-33  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0155497  normal 
 
 
-
 
NC_013947  Snas_5789  HAD-superfamily hydrolase subfamily IA, variant 3  38.97 
 
 
248 aa  139  3e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.805096 
 
 
-
 
NC_010725  Mpop_3493  HAD-superfamily hydrolase, subfamily IA, variant 3  38.28 
 
 
228 aa  135  6.0000000000000005e-31  Methylobacterium populi BJ001  Bacteria  normal  normal  0.292984 
 
 
-
 
NC_012560  Avin_11460  HAD-superfamily hydrolase, subfamily IA, variant 3  42.06 
 
 
233 aa  133  3e-30  Azotobacter vinelandii DJ  Bacteria  normal  0.0237278  n/a   
 
 
-
 
NC_009484  Acry_2473  HAD family hydrolase  37.33 
 
 
230 aa  133  3e-30  Acidiphilium cryptum JF-5  Bacteria  normal  0.0237734  n/a   
 
 
-
 
NC_010681  Bphyt_3243  HAD-superfamily hydrolase, subfamily IA, variant 3  42.47 
 
 
237 aa  131  9e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0124526  normal  0.9958 
 
 
-
 
NC_009636  Smed_2352  HAD family hydrolase  38.34 
 
 
222 aa  131  1.0000000000000001e-29  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00492029  normal 
 
 
-
 
NC_009428  Rsph17025_3004  HAD family hydrolase  42.79 
 
 
214 aa  131  1.0000000000000001e-29  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.293742 
 
 
-
 
NC_013132  Cpin_5021  HAD-superfamily hydrolase, subfamily IA, variant 3  33.8 
 
 
223 aa  130  2.0000000000000002e-29  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.886555  normal  0.11436 
 
 
-
 
NC_009719  Plav_2303  HAD family hydrolase  37.96 
 
 
230 aa  129  4.0000000000000003e-29  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.432343  normal  0.0684019 
 
 
-
 
NC_008254  Meso_3783  HAD family hydrolase  38.17 
 
 
242 aa  129  5.0000000000000004e-29  Chelativorans sp. BNC1  Bacteria  normal  0.0711244  n/a   
 
 
-
 
NC_007951  Bxe_A0723  HAD family hydrolase  42.92 
 
 
240 aa  128  7.000000000000001e-29  Burkholderia xenovorans LB400  Bacteria  normal  0.272248  normal 
 
 
-
 
NC_009667  Oant_0603  HAD family hydrolase  37.44 
 
 
230 aa  127  1.0000000000000001e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.432882  n/a   
 
 
-
 
NC_011757  Mchl_3616  HAD-superfamily hydrolase, subfamily IA, variant 3  37.79 
 
 
228 aa  127  2.0000000000000002e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3573  hypothetical protein  36.56 
 
 
224 aa  126  2.0000000000000002e-28  Agrobacterium vitis S4  Bacteria  normal  0.141866  n/a   
 
 
-
 
NC_010172  Mext_3293  HAD family hydrolase  37.9 
 
 
245 aa  126  3e-28  Methylobacterium extorquens PA1  Bacteria  normal  0.567903  normal  0.782847 
 
 
-
 
NC_008390  Bamb_2741  HAD family hydrolase  36.2 
 
 
240 aa  125  4.0000000000000003e-28  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA0959  HAD-superfamily hydrolase, subfamily IA, variant 3 family protein  37.04 
 
 
216 aa  125  5e-28  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0734377  n/a   
 
 
-
 
NC_011894  Mnod_1142  HAD-superfamily hydrolase, subfamily IA, variant 3  40 
 
 
231 aa  125  5e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.513371  n/a   
 
 
-
 
NC_008783  BARBAKC583_0412  HAD family hydrolase  34.98 
 
 
230 aa  125  6e-28  Bartonella bacilliformis KC583  Bacteria  normal  0.983661  n/a   
 
 
-
 
NC_010551  BamMC406_2605  HAD family hydrolase  35.91 
 
 
240 aa  124  1e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0637  HAD family hydrolase  40 
 
 
230 aa  124  1e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.808868  n/a   
 
 
-
 
NC_008254  Meso_0762  HAD family hydrolase  36.04 
 
 
229 aa  124  1e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0336  HAD-superfamily hydrolase  41.28 
 
 
232 aa  122  3e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  0.438572  n/a   
 
 
-
 
NC_007434  BURPS1710b_1038  HAD-superfamily hydrolase  41.28 
 
 
232 aa  123  3e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0879  HAD family hydrolase  41.28 
 
 
232 aa  123  3e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0082  HAD family hydrolase  41.28 
 
 
232 aa  122  3e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0196618  n/a   
 
 
-
 
NC_008836  BMA10229_A2468  HAD-superfamily hydrolase  41.28 
 
 
232 aa  122  3e-27  Burkholderia mallei NCTC 10229  Bacteria  normal  0.273983  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0634  HAD-superfamily hydrolase  41.28 
 
 
232 aa  122  3e-27  Burkholderia mallei SAVP1  Bacteria  normal  0.535941  n/a   
 
 
-
 
NC_010622  Bphy_0418  HAD family hydrolase  35.62 
 
 
228 aa  122  4e-27  Burkholderia phymatum STM815  Bacteria  normal  normal  0.513093 
 
 
-
 
NC_012848  Rleg_4948  HAD-superfamily hydrolase, subfamily IA, variant 3  36.77 
 
 
223 aa  121  9.999999999999999e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0698  HAD-superfamily hydrolase  41.1 
 
 
232 aa  121  9.999999999999999e-27  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1080  hypothetical protein  36.04 
 
 
229 aa  121  9.999999999999999e-27  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0489  HAD superfamily hydrolase  39.32 
 
 
228 aa  120  1.9999999999999998e-26  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0493  phosphoglycolate phosphatase  39.32 
 
 
228 aa  120  1.9999999999999998e-26  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2179  HAD family hydrolase  40 
 
 
223 aa  120  1.9999999999999998e-26  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.812633 
 
 
-
 
NC_010717  PXO_02024  hydrolase  45.2 
 
 
206 aa  120  1.9999999999999998e-26  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.247086  n/a   
 
 
-
 
NC_007510  Bcep18194_A6015  HAD family hydrolase  34.84 
 
 
228 aa  119  3e-26  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0453  HAD-superfamily hydrolase, subfamily IA, variant 3  41.97 
 
 
219 aa  119  3.9999999999999996e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0637  HAD-superfamily hydrolase, subfamily IA, variant 3  34.98 
 
 
229 aa  119  6e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.872179  normal  0.213307 
 
 
-
 
NC_008060  Bcen_2076  HAD family hydrolase  34.35 
 
 
244 aa  119  6e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.140944  n/a   
 
 
-
 
NC_008542  Bcen2424_2687  HAD family hydrolase  34.35 
 
 
244 aa  119  6e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0694  HAD-superfamily hydrolase, subfamily IA, variant 3  35.87 
 
 
229 aa  118  7e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_1982  HAD family hydrolase  40.89 
 
 
237 aa  118  7.999999999999999e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.118092  n/a   
 
 
-
 
NC_008390  Bamb_2640  HAD family hydrolase  40.62 
 
 
237 aa  118  7.999999999999999e-26  Burkholderia ambifaria AMMD  Bacteria  normal  0.576989  n/a   
 
 
-
 
NC_008542  Bcen2424_2592  HAD family hydrolase  40.89 
 
 
237 aa  118  7.999999999999999e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  0.119238  n/a   
 
 
-
 
NC_010508  Bcenmc03_2716  HAD family hydrolase  34.55 
 
 
228 aa  118  7.999999999999999e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3445  HAD-superfamily hydrolase, subfamily IA, variant 3  38.17 
 
 
229 aa  118  9e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_2743  HAD family hydrolase  35.6 
 
 
227 aa  118  9e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.994994  normal  0.0511558 
 
 
-
 
NC_010508  Bcenmc03_2616  HAD family hydrolase  40.89 
 
 
237 aa  117  9.999999999999999e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.973469  normal 
 
 
-
 
NC_012850  Rleg_3747  HAD-superfamily hydrolase, subfamily IA, variant 3  37.63 
 
 
229 aa  117  9.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.422409  normal 
 
 
-
 
NC_007951  Bxe_A0636  HAD family hydrolase  35.11 
 
 
252 aa  118  9.999999999999999e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_0875  HAD family hydrolase  41.28 
 
 
232 aa  116  1.9999999999999998e-25  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0610  HAD family hydrolase  34.55 
 
 
260 aa  116  1.9999999999999998e-25  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4176  HAD family hydrolase  41.45 
 
 
218 aa  117  1.9999999999999998e-25  Paracoccus denitrificans PD1222  Bacteria  normal  0.767688  normal 
 
 
-
 
NC_008228  Patl_4120  HAD family hydrolase  34.11 
 
 
237 aa  116  3.9999999999999997e-25  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1725  HAD family hydrolase  38.17 
 
 
228 aa  115  5e-25  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3323  HAD-superfamily hydrolase, subfamily IA, variant 3  36.07 
 
 
228 aa  115  5e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  0.866957  normal  0.157588 
 
 
-
 
NC_009441  Fjoh_4184  HAD family hydrolase  30.84 
 
 
212 aa  115  6e-25  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0822  HAD family hydrolase  35.53 
 
 
396 aa  115  6e-25  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0231  HAD-superfamily hydrolase  35.91 
 
 
228 aa  114  1.0000000000000001e-24  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2443  HAD-superfamily hydrolase  35.91 
 
 
228 aa  114  1.0000000000000001e-24  Burkholderia mallei NCTC 10247  Bacteria  normal  0.151709  n/a   
 
 
-
 
NC_009076  BURPS1106A_0730  haloacid dehalogenase, IA family protein  35.91 
 
 
228 aa  114  1.0000000000000001e-24  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0113  HAD family hydrolase  33.97 
 
 
215 aa  114  1.0000000000000001e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  0.254082  normal  0.189909 
 
 
-
 
NC_007434  BURPS1710b_0896  HAD-superfamily hydrolase  35.91 
 
 
228 aa  114  1.0000000000000001e-24  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0089  hypothetical protein  38.17 
 
 
228 aa  114  1.0000000000000001e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.16166  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2715  HAD-superfamily hydrolase  35.91 
 
 
228 aa  114  1.0000000000000001e-24  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2363  HAD-superfamily hydrolase  35.91 
 
 
228 aa  114  1.0000000000000001e-24  Burkholderia mallei NCTC 10229  Bacteria  normal  0.340076  n/a   
 
 
-
 
NC_009074  BURPS668_0716  haloacid dehalogenase, IA family protein  35.91 
 
 
228 aa  114  2.0000000000000002e-24  Burkholderia pseudomallei 668  Bacteria  normal  0.93684  n/a   
 
 
-
 
NC_009667  Oant_1388  HAD family hydrolase  36.51 
 
 
223 aa  113  2.0000000000000002e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
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