108 homologs were found in PanDaTox collection
for query gene RSP_4056 on replicon NC_007489
Organism: Rhodobacter sphaeroides 2.4.1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007489  RSP_4056  histone-like nucleoid-structuring protein H-NS  100 
 
 
105 aa  212  1.9999999999999998e-54  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009432  Rsph17025_4385  histone family protein nucleoid-structuring protein H-NS  67.62 
 
 
105 aa  151  2.9999999999999998e-36  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0118502  normal  0.891502 
 
 
-
 
NC_009428  Rsph17025_2961  histone family protein nucleoid-structuring protein H-NS  68.93 
 
 
104 aa  137  4.999999999999999e-32  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.0570093 
 
 
-
 
NC_007493  RSP_1517  HNS family histone-like protein  67.96 
 
 
104 aa  136  1e-31  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.632748  n/a   
 
 
-
 
NC_009049  Rsph17029_0169  histone family protein nucleoid-structuring protein H-NS  67.96 
 
 
104 aa  136  1e-31  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.485688 
 
 
-
 
NC_009430  Rsph17025_4162  hypothetical protein  58.82 
 
 
247 aa  132  9.999999999999999e-31  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1545  histone family protein nucleoid-structuring protein H-NS  55.24 
 
 
105 aa  120  5e-27  Paracoccus denitrificans PD1222  Bacteria  normal  0.718681  normal  0.0365604 
 
 
-
 
NC_007489  RSP_7372  H-NS family DNA-binding protein  49.52 
 
 
104 aa  103  6e-22  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007801  Jann_4229  histone-like nucleoid-structuring protein H-NS  44.76 
 
 
108 aa  99  2e-20  Jannaschia sp. CCS1  Bacteria  normal  0.289876  normal 
 
 
-
 
NC_008686  Pden_2782  histone family protein nucleoid-structuring protein H-NS  52.88 
 
 
102 aa  98.6  2e-20  Paracoccus denitrificans PD1222  Bacteria  normal  0.0983316  normal 
 
 
-
 
NC_009430  Rsph17025_4136  hypothetical protein  51.96 
 
 
132 aa  99.4  2e-20  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3349  histone family protein nucleoid-structuring protein H-NS  50.48 
 
 
105 aa  98.6  3e-20  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.340557 
 
 
-
 
NC_008687  Pden_3156  histone family protein nucleoid-structuring protein H-NS  50.48 
 
 
105 aa  92  3e-18  Paracoccus denitrificans PD1222  Bacteria  normal  0.116532  normal  0.477373 
 
 
-
 
NC_007802  Jann_0798  histone-like nucleoid-structuring protein H-NS  40.59 
 
 
119 aa  82  0.000000000000002  Jannaschia sp. CCS1  Bacteria  normal  0.835916  normal 
 
 
-
 
NC_009952  Dshi_1024  histone family protein nucleoid-structuring protein H-NS  38.46 
 
 
105 aa  80.9  0.000000000000006  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0737742  normal  0.814079 
 
 
-
 
NC_008043  TM1040_3107  histone-like nucleoid-structuring protein H-NS  46.67 
 
 
106 aa  76.6  0.0000000000001  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1986  histone family protein nucleoid-structuring protein H-NS  37.5 
 
 
105 aa  75.1  0.0000000000003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  decreased coverage  0.000000114439  normal  0.0153833 
 
 
-
 
NC_007969  Pcryo_1957  histone-like nucleoid-structuring protein H-NS  37.5 
 
 
121 aa  71.6  0.000000000003  Psychrobacter cryohalolentis K5  Bacteria  hitchhiker  0.00140882  normal 
 
 
-
 
NC_013422  Hneap_0439  histone family protein nucleoid-structuring protein H-NS  33.64 
 
 
107 aa  68.6  0.00000000003  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000352276  n/a   
 
 
-
 
NC_013421  Pecwa_1651  histone family protein nucleoid-structuring protein H-NS  38.83 
 
 
107 aa  66.6  0.0000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0002  histone-like nucleoid-structuring protein H-NS  34.43 
 
 
131 aa  64.7  0.0000000005  Rhodobacter sphaeroides 2.4.1  Bacteria  hitchhiker  0.0049965  n/a   
 
 
-
 
NC_007964  Nham_3069  histone-like nucleoid-structuring protein H-NS  33.03 
 
 
130 aa  62.8  0.000000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.39515  n/a   
 
 
-
 
NC_007298  Daro_2525  histone-like nucleoid-structuring protein H-NS  34.29 
 
 
105 aa  61.6  0.000000003  Dechloromonas aromatica RCB  Bacteria  decreased coverage  9.16284e-21  normal  0.0335348 
 
 
-
 
NC_002977  MCA1863  regulator protein, putative  33.64 
 
 
112 aa  58.5  0.00000003  Methylococcus capsulatus str. Bath  Bacteria  unclonable  0.0000000371113  n/a   
 
 
-
 
NC_008789  Hhal_1489  histone family protein nucleoid-structuring protein H-NS  36.45 
 
 
115 aa  57.8  0.00000004  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03185  DNA-binding protein  33.88 
 
 
153 aa  58.2  0.00000004  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_3068  histone-like nucleoid-structuring protein H-NS  32.14 
 
 
122 aa  57.4  0.00000006  Nitrobacter hamburgensis X14  Bacteria  normal  0.280777  n/a   
 
 
-
 
NC_011071  Smal_0526  histone family protein nucleoid-structuring protein H-NS  33.06 
 
 
127 aa  56.6  0.0000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.280908 
 
 
-
 
NC_010681  Bphyt_0398  histone family protein nucleoid-structuring protein H-NS  40.23 
 
 
100 aa  55.1  0.0000003  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4321  putative HNS-like transcriptional regulator  39.08 
 
 
100 aa  53.9  0.0000008  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3384  histone-like nucleoid-structuring protein H-NS  35.64 
 
 
97 aa  52.8  0.000002  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2825  histone-like nucleoid-structuring protein H-NS  35.64 
 
 
97 aa  52.4  0.000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0195  histone family protein nucleoid-structuring protein H-NS  35.64 
 
 
97 aa  52.4  0.000002  Burkholderia ambifaria AMMD  Bacteria  normal  0.750004  n/a   
 
 
-
 
NC_008542  Bcen2424_0281  histone family protein nucleoid-structuring protein H-NS  35.64 
 
 
97 aa  52.4  0.000002  Burkholderia cenocepacia HI2424  Bacteria  normal  0.166699  n/a   
 
 
-
 
NC_008782  Ajs_1598  nucleoid protein H-NS  43.75 
 
 
117 aa  52.8  0.000002  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A3165  putative HNS-like transcription regulator protein  37.37 
 
 
118 aa  52.4  0.000002  Methylibium petroleiphilum PM1  Bacteria  normal  hitchhiker  0.00480481 
 
 
-
 
NC_010508  Bcenmc03_0263  histone family protein nucleoid-structuring protein H-NS  35.64 
 
 
97 aa  52.4  0.000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.820493 
 
 
-
 
NC_010551  BamMC406_0209  histone family protein nucleoid-structuring protein H-NS  35.64 
 
 
97 aa  52.4  0.000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.726678 
 
 
-
 
NC_010622  Bphy_0116  histone family protein nucleoid-structuring protein H-NS  36.36 
 
 
100 aa  52.8  0.000002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA2905  H-NS histone family protein  37.25 
 
 
97 aa  51.6  0.000003  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0048  H-NS histone family protein  37.25 
 
 
125 aa  52  0.000003  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3155  H-NS histone family protein  37.25 
 
 
97 aa  51.6  0.000003  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3404  H-NS histone family protein  37.25 
 
 
97 aa  51.6  0.000003  Burkholderia mallei SAVP1  Bacteria  normal  0.237819  n/a   
 
 
-
 
NC_008836  BMA10229_A1636  H-NS histone family protein  37.25 
 
 
97 aa  51.6  0.000003  Burkholderia mallei NCTC 10229  Bacteria  normal  0.741416  n/a   
 
 
-
 
NC_009074  BURPS668_3827  H-NS histone family protein  37.25 
 
 
97 aa  51.6  0.000003  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3909  H-NS histone family protein  37.25 
 
 
97 aa  51.6  0.000003  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2965  H-NS histone family protein  37.25 
 
 
97 aa  51.6  0.000003  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0190  histone family protein nucleoid-structuring protein H-NS  35.64 
 
 
97 aa  51.2  0.000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.317548  hitchhiker  0.0000000190695 
 
 
-
 
NC_008789  Hhal_0441  histone family protein nucleoid-structuring protein H-NS  32.08 
 
 
124 aa  50.8  0.000006  Halorhodospira halophila SL1  Bacteria  normal  0.940607  n/a   
 
 
-
 
NC_009428  Rsph17025_2688  hypothetical protein  34 
 
 
110 aa  48.9  0.00002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.299941  normal 
 
 
-
 
NC_010577  XfasM23_1726  histone family protein nucleoid-structuring protein H-NS  41.3 
 
 
124 aa  49.3  0.00002  Xylella fastidiosa M23  Bacteria  normal  0.442577  n/a   
 
 
-
 
NC_010513  Xfasm12_1793  DNA-binding protein  40 
 
 
124 aa  48.5  0.00003  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5596  nucleoid protein H-NS  31.94 
 
 
102 aa  48.1  0.00004  Ralstonia eutropha JMP134  Bacteria  normal  0.16143  n/a   
 
 
-
 
NC_010086  Bmul_3806  histone family protein nucleoid-structuring protein H-NS  36.96 
 
 
100 aa  48.1  0.00004  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0101066  hitchhiker  0.00273603 
 
 
-
 
NC_012791  Vapar_1795  histone family protein nucleoid-structuring protein H-NS  35.24 
 
 
114 aa  48.1  0.00004  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2714  DNA-binding protein BprA  32.61 
 
 
111 aa  47.8  0.00006  Burkholderia thailandensis E264  Bacteria  normal  0.344106  n/a   
 
 
-
 
NC_008781  Pnap_3493  histone family protein nucleoid-structuring protein H-NS  34.72 
 
 
113 aa  46.6  0.0001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.572012  normal  0.600215 
 
 
-
 
NC_008760  Pnap_4730  histone family protein nucleoid-structuring protein H-NS  32.17 
 
 
121 aa  45.8  0.0002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.167387  normal 
 
 
-
 
NC_012912  Dd1591_2575  histone family protein nucleoid-structuring protein H-NS  32.14 
 
 
133 aa  45.4  0.0002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010553  BamMC406_6777  histone family protein nucleoid-structuring protein H-NS  37.88 
 
 
99 aa  45.8  0.0002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1152  histone family protein nucleoid-structuring protein H-NS  32.14 
 
 
133 aa  45.8  0.0002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3562  histone family protein nucleoid-structuring protein H-NS  28.7 
 
 
139 aa  45.8  0.0002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.626821  normal  0.684238 
 
 
-
 
NC_007958  RPD_2738  histone-like nucleoid-structuring protein H-NS  25.66 
 
 
139 aa  44.7  0.0005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.789792  normal 
 
 
-
 
NC_008758  Pnap_4578  histone family protein nucleoid-structuring protein H-NS  32.17 
 
 
121 aa  44.7  0.0005  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003852  DNA-binding protein H-NS  34.62 
 
 
135 aa  43.9  0.0008  Vibrio sp. Ex25  Bacteria  normal  0.0195644  n/a   
 
 
-
 
NC_003296  RS02604  putative HNS-like transcription regulator protein  32.47 
 
 
102 aa  43.5  0.0009  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.00414449  normal  0.0842767 
 
 
-
 
NC_007952  Bxe_B2975  putative H-NS-like transcription regulator  35.35 
 
 
96 aa  43.5  0.0009  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008826  Mpe_B0416  nucleoid protein H-NS  29.2 
 
 
114 aa  43.5  0.0009  Methylibium petroleiphilum PM1  Bacteria  normal  0.0193878  hitchhiker  0.00866736 
 
 
-
 
NC_011148  SeAg_A0019  H-NS histone family  44.62 
 
 
141 aa  43.5  0.0009  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  n/a    n/a   
 
 
-
 
NC_007974  Rmet_3677  histone-like nucleoid-structuring protein H-NS  29 
 
 
102 aa  43.1  0.001  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.166379 
 
 
-
 
NC_009049  Rsph17029_2911  hypothetical protein  28.57 
 
 
92 aa  43.1  0.001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2585  histone family protein nucleoid-structuring protein H-NS  28.18 
 
 
130 aa  42.7  0.001  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000212728  normal 
 
 
-
 
NC_012857  Rpic12D_4348  histone family protein nucleoid-structuring protein H-NS  28.77 
 
 
102 aa  43.1  0.001  Ralstonia pickettii 12D  Bacteria  normal  normal  0.513312 
 
 
-
 
NC_010676  Bphyt_6934  histone family protein nucleoid-structuring protein H-NS  32.14 
 
 
96 aa  43.1  0.001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.909068  normal 
 
 
-
 
NC_010678  Rpic_4238  histone family protein nucleoid-structuring protein H-NS  28.77 
 
 
102 aa  43.1  0.001  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A0112  HNS-like transcriptional regulator  32.97 
 
 
100 aa  42  0.003  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.00000000000000994611  normal 
 
 
-
 
NC_010679  Bphyt_7403  histone family protein nucleoid-structuring protein H-NS  27.45 
 
 
96 aa  41.6  0.004  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3822  histone family protein nucleoid-structuring protein H-NS  32.97 
 
 
100 aa  41.6  0.004  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000137841  normal 
 
 
-
 
NC_006348  BMA2867  H-NS histone family protein  34.07 
 
 
98 aa  41.2  0.005  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0084  H-NS histone family protein  34.07 
 
 
98 aa  41.2  0.005  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3442  H-NS histone family protein  34.07 
 
 
98 aa  41.2  0.005  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1677  H-NS histone family protein  34.07 
 
 
98 aa  41.2  0.005  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3862  H-NS histone family protein  34.07 
 
 
98 aa  41.2  0.005  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3943  H-NS histone family protein  34.07 
 
 
98 aa  41.2  0.005  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3109  H-NS histone family protein  34.07 
 
 
98 aa  41.2  0.005  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01827  hypothetical protein  36.67 
 
 
135 aa  41.2  0.005  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010623  Bphy_4285  histone family protein nucleoid-structuring protein H-NS  32.65 
 
 
97 aa  41.2  0.005  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012855  Rpic12D_4689  histone family protein nucleoid-structuring protein H-NS  35.29 
 
 
92 aa  41.2  0.005  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0843  DNA-binding protein BprA  39.66 
 
 
96 aa  40.8  0.006  Burkholderia thailandensis E264  Bacteria  normal  0.277711  n/a   
 
 
-
 
NC_010524  Lcho_2742  histone family protein nucleoid-structuring protein H-NS  46.88 
 
 
123 aa  40.8  0.006  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.0000655544 
 
 
-
 
NC_006348  BMA0864  H-NS histone family protein  38.98 
 
 
93 aa  40.8  0.007  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1784  H-NS histone family protein  38.98 
 
 
93 aa  40.8  0.007  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1386  H-NS histone family protein  38.98 
 
 
93 aa  40.8  0.007  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0489  H-NS histone family protein  38.98 
 
 
93 aa  40.8  0.007  Burkholderia mallei NCTC 10229  Bacteria  normal  0.416523  n/a   
 
 
-
 
NC_009074  BURPS668_1601  putative DNA-binding protein  38.98 
 
 
93 aa  40.8  0.007  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1623  H-NS histone family protein  38.98 
 
 
93 aa  40.8  0.007  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0668  H-NS histone family protein  38.98 
 
 
93 aa  40.8  0.007  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0958724  n/a   
 
 
-
 
NC_007434  BURPS1710b_2204  BphA  34.48 
 
 
151 aa  40.4  0.008  Burkholderia pseudomallei 1710b  Bacteria  normal  0.322036  n/a   
 
 
-
 
NC_007651  BTH_I2686  H-NS histone family protein  38.98 
 
 
93 aa  40.4  0.008  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2856  histone family protein nucleoid-structuring protein H-NS  30 
 
 
130 aa  40.4  0.008  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
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