31 homologs were found in PanDaTox collection
for query gene RSP_2067 on replicon NC_007493
Organism: Rhodobacter sphaeroides 2.4.1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007493  RSP_2067  prophage LambdaSo, HK97 family major capsid protein  100 
 
 
433 aa  875    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.023752  n/a   
 
 
-
 
NC_009050  Rsph17029_3318  HK97 family phage major capsid protein  99.54 
 
 
433 aa  872    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.0235436 
 
 
-
 
NC_008686  Pden_0991  HK97 family phage major capsid protein  56.51 
 
 
449 aa  453  1.0000000000000001e-126  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0362  HK97 family phage major capsid protein  56.51 
 
 
449 aa  453  1.0000000000000001e-126  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_1682  HK97 family phage major capsid protein  43.13 
 
 
418 aa  313  3.9999999999999997e-84  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A4465  phage major capsid protein, HK97 family  40.1 
 
 
405 aa  284  3.0000000000000004e-75  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  hitchhiker  0.0000706363 
 
 
-
 
NC_011663  Sbal223_2592  phage major capsid protein, HK97 family  40.25 
 
 
396 aa  281  2e-74  Shewanella baltica OS223  Bacteria  normal  normal  0.339104 
 
 
-
 
NC_007794  Saro_0649  Phage major capsid protein, HK97  39.09 
 
 
465 aa  280  4e-74  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.296668  n/a   
 
 
-
 
NC_010002  Daci_1634  major head protein  44.47 
 
 
405 aa  280  5e-74  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1668  phage major capsid protein, HK97  40.99 
 
 
403 aa  275  9e-73  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1600  phage major capsid protein, HK97 family  40.57 
 
 
433 aa  275  1.0000000000000001e-72  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2963  prophage LambdaSo, HK97 family major capsid protein  40.64 
 
 
396 aa  269  7e-71  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009049  Rsph17029_0642  phage major head protein  42.68 
 
 
403 aa  265  8e-70  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1567  HK97 family phage major capsid protein  36.87 
 
 
414 aa  224  2e-57  Pseudomonas putida KT2440  Bacteria  normal  0.944174  decreased coverage  0.0000690857 
 
 
-
 
NC_010501  PputW619_1339  HK97 family phage major capsid protein  36.87 
 
 
418 aa  213  3.9999999999999995e-54  Pseudomonas putida W619  Bacteria  normal  normal  0.124448 
 
 
-
 
NC_010501  PputW619_3943  HK97 family phage major capsid protein  32.6 
 
 
400 aa  196  5.000000000000001e-49  Pseudomonas putida W619  Bacteria  normal  0.204605  normal 
 
 
-
 
NC_010623  Bphy_3394  HK97 family phage major capsid protein  35.55 
 
 
397 aa  193  5e-48  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.00000000537798 
 
 
-
 
NC_013757  Gobs_3579  phage major capsid protein, HK97  31.2 
 
 
411 aa  169  8e-41  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.978109  n/a   
 
 
-
 
NC_007204  Psyc_0461  major phage capsid subunit precursor  29.57 
 
 
417 aa  152  2e-35  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.561977 
 
 
-
 
NC_013132  Cpin_3892  hypothetical protein  28.14 
 
 
421 aa  87  5e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0353742 
 
 
-
 
NC_009338  Mflv_2917  HK97 family phage prohead protease  26.9 
 
 
579 aa  71.6  0.00000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.595306  normal  0.164671 
 
 
-
 
NC_011989  Avi_0861  phage phi-C31 gp36 major capsid-like protein  25.71 
 
 
403 aa  68.6  0.0000000002  Agrobacterium vitis S4  Bacteria  normal  0.456659  n/a   
 
 
-
 
NC_009338  Mflv_3892  putative phage head  30.04 
 
 
414 aa  65.1  0.000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.862088  normal  0.410951 
 
 
-
 
NC_010721  Mpop_5467  hypothetical protein  26.9 
 
 
386 aa  65.1  0.000000002  Methylobacterium populi BJ001  Bacteria  n/a    n/a   
 
 
-
 
NC_011004  Rpal_3980  phage major capsid protein, HK97 family  26.03 
 
 
382 aa  52.4  0.00002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1895  HK97 family phage major capsid protein  25.44 
 
 
389 aa  50.1  0.00007  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_1719  phage major capsid protein, HK97  25.94 
 
 
384 aa  48.1  0.0003  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2837  hypothetical protein  24.47 
 
 
352 aa  44.3  0.004  Rhodoferax ferrireducens T118  Bacteria  normal  0.0998237  n/a   
 
 
-
 
NC_007406  Nwi_1625  Phage major capsid protein, HK97  24.63 
 
 
385 aa  43.1  0.008  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.490763  normal  0.450118 
 
 
-
 
NC_007406  Nwi_1482  Phage major capsid protein, HK97  24.63 
 
 
385 aa  43.1  0.008  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.353157 
 
 
-
 
NC_013530  Xcel_2063  hypothetical protein  31.07 
 
 
430 aa  43.1  0.01  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0772864  n/a   
 
 
-
 
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