More than 300 homologs were found in PanDaTox collection
for query gene RPD_3999 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007958  RPD_3999  GTP-dependent nucleic acid-binding protein EngD  100 
 
 
365 aa  739  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1769  GTP-dependent nucleic acid-binding protein EngD  89.32 
 
 
365 aa  639  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4838  GTP-dependent nucleic acid-binding protein EngD  96.71 
 
 
365 aa  719  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2510  GTP-dependent nucleic acid-binding protein EngD  86.3 
 
 
365 aa  647  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.566797  normal  0.501348 
 
 
-
 
NC_007778  RPB_4159  GTP-dependent nucleic acid-binding protein EngD  96.99 
 
 
365 aa  721  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.471291  normal  0.369246 
 
 
-
 
NC_007925  RPC_1417  GTP-dependent nucleic acid-binding protein EngD  93.42 
 
 
365 aa  695  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.685552 
 
 
-
 
NC_007964  Nham_3101  GTP-dependent nucleic acid-binding protein EngD  87.95 
 
 
365 aa  653  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_2696  GTP-dependent nucleic acid-binding protein EngD  80.44 
 
 
365 aa  578  1e-164  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2473  GTP-dependent nucleic acid-binding protein EngD  79.89 
 
 
365 aa  575  1e-163  Methylobacterium extorquens PA1  Bacteria  normal  0.104897  normal 
 
 
-
 
NC_010725  Mpop_2401  GTP-dependent nucleic acid-binding protein EngD  79.89 
 
 
365 aa  577  1e-163  Methylobacterium populi BJ001  Bacteria  normal  0.819289  normal 
 
 
-
 
NC_010505  Mrad2831_4124  GTP-dependent nucleic acid-binding protein EngD  78.51 
 
 
365 aa  572  1e-162  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2394  GTP-dependent nucleic acid-binding protein EngD  79.89 
 
 
365 aa  569  1e-161  Methylobacterium sp. 4-46  Bacteria  normal  0.207486  decreased coverage  0.00637263 
 
 
-
 
NC_009720  Xaut_2605  GTP-dependent nucleic acid-binding protein EngD  78.51 
 
 
395 aa  567  1e-160  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.717078 
 
 
-
 
NC_009719  Plav_2255  GTP-binding protein YchF  74.93 
 
 
369 aa  559  1e-158  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.416023  normal  0.725839 
 
 
-
 
NC_011894  Mnod_2817  GTP-dependent nucleic acid-binding protein EngD  79.61 
 
 
365 aa  554  1e-156  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0746307  n/a   
 
 
-
 
NC_008044  TM1040_0224  GTP-dependent nucleic acid-binding protein EngD  72.05 
 
 
365 aa  545  1e-154  Ruegeria sp. TM1040  Bacteria  normal  0.626495  normal 
 
 
-
 
NC_011666  Msil_1630  GTP-dependent nucleic acid-binding protein EngD  78.24 
 
 
365 aa  542  1e-153  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00770897 
 
 
-
 
NC_009952  Dshi_0954  GTP-dependent nucleic acid-binding protein EngD  72.05 
 
 
365 aa  544  1e-153  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3035  GTP-dependent nucleic acid-binding protein EngD  71.66 
 
 
367 aa  538  1e-152  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_1389  GTP-dependent nucleic acid-binding protein EngD  71.58 
 
 
366 aa  537  1e-151  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.159782 
 
 
-
 
NC_008686  Pden_0334  GTP-dependent nucleic acid-binding protein EngD  73.35 
 
 
365 aa  534  1e-151  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.246253 
 
 
-
 
NC_010581  Bind_0170  GTP-dependent nucleic acid-binding protein EngD  78.36 
 
 
365 aa  536  1e-151  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.0709046  normal 
 
 
-
 
NC_009049  Rsph17029_2490  GTP-dependent nucleic acid-binding protein EngD  72.25 
 
 
365 aa  532  1e-150  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.071382  normal 
 
 
-
 
NC_007493  RSP_0832  GTP-dependent nucleic acid-binding protein EngD  72.25 
 
 
365 aa  532  1e-150  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.596144  n/a   
 
 
-
 
NC_007794  Saro_2121  GTP-dependent nucleic acid-binding protein EngD  70.77 
 
 
366 aa  533  1e-150  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.328757  n/a   
 
 
-
 
NC_011369  Rleg2_2771  GTP-dependent nucleic acid-binding protein EngD  70.3 
 
 
367 aa  530  1e-149  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2266  GTP-dependent nucleic acid-binding protein EngD  70.3 
 
 
367 aa  530  1e-149  Sinorhizobium medicae WSM419  Bacteria  normal  0.83049  normal  0.983976 
 
 
-
 
NC_009428  Rsph17025_0348  GTP-dependent nucleic acid-binding protein EngD  72.53 
 
 
365 aa  528  1e-149  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.079313  normal 
 
 
-
 
NC_007643  Rru_A3748  GTP-dependent nucleic acid-binding protein EngD  71.04 
 
 
367 aa  526  1e-148  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2159  GTP-dependent nucleic acid-binding protein EngD  69.13 
 
 
367 aa  527  1e-148  Chelativorans sp. BNC1  Bacteria  normal  0.470887  n/a   
 
 
-
 
NC_011989  Avi_3194  GTP-dependent nucleic acid-binding protein EngD  69.75 
 
 
367 aa  517  1e-145  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1621  GTP-dependent nucleic acid-binding protein EngD  71.27 
 
 
365 aa  513  1e-144  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.340405 
 
 
-
 
NC_008347  Mmar10_0755  GTP-dependent nucleic acid-binding protein EngD  71.15 
 
 
365 aa  511  1e-144  Maricaulis maris MCS10  Bacteria  normal  normal  0.50499 
 
 
-
 
NC_004310  BR1537  GTP-dependent nucleic acid-binding protein EngD  67.57 
 
 
367 aa  508  1e-143  Brucella suis 1330  Bacteria  normal  0.0679708  n/a   
 
 
-
 
NC_009505  BOV_1486  GTP-dependent nucleic acid-binding protein EngD  67.57 
 
 
367 aa  508  1e-143  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_1085  GTP-dependent nucleic acid-binding protein EngD  72.05 
 
 
364 aa  506  1e-142  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0708  GTP-dependent nucleic acid-binding protein EngD  67.49 
 
 
366 aa  506  1e-142  Caulobacter sp. K31  Bacteria  normal  0.965008  normal 
 
 
-
 
NC_008783  BARBAKC583_1002  GTP-dependent nucleic acid-binding protein EngD  66.76 
 
 
367 aa  507  1e-142  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3582  GTP-dependent nucleic acid-binding protein EngD  69.53 
 
 
365 aa  506  1e-142  Jannaschia sp. CCS1  Bacteria  normal  0.216393  normal 
 
 
-
 
NC_009667  Oant_1629  GTP-dependent nucleic acid-binding protein EngD  66.76 
 
 
367 aa  498  1e-140  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.866476  n/a   
 
 
-
 
NC_009484  Acry_1676  GTP-dependent nucleic acid-binding protein EngD  68.96 
 
 
364 aa  491  1e-138  Acidiphilium cryptum JF-5  Bacteria  normal  0.0252475  n/a   
 
 
-
 
NC_007498  Pcar_2000  GTP-dependent nucleic acid-binding protein EngD  61.64 
 
 
364 aa  451  1e-126  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0365484  n/a   
 
 
-
 
NC_006369  lpl2579  GTP-dependent nucleic acid-binding protein EngD  61.37 
 
 
363 aa  452  1e-126  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp2707  GTP-dependent nucleic acid-binding protein EngD  61.37 
 
 
363 aa  452  1e-126  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_008309  HS_0503  GTP-dependent nucleic acid-binding protein EngD  60.82 
 
 
363 aa  449  1e-125  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2845  GTP-dependent nucleic acid-binding protein EngD  62.47 
 
 
364 aa  448  1e-125  Geobacter metallireducens GS-15  Bacteria  hitchhiker  1.49199e-06  hitchhiker  2.11408e-13 
 
 
-
 
NC_009253  Dred_1280  GTP-binding protein YchF  62.94 
 
 
367 aa  450  1e-125  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0442  GTP-dependent nucleic acid-binding protein EngD  57.65 
 
 
364 aa  448  1e-125  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  0.392269  n/a   
 
 
-
 
NC_008609  Ppro_0746  GTP-dependent nucleic acid-binding protein EngD  61.1 
 
 
364 aa  446  1e-124  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0310591  n/a   
 
 
-
 
NC_012918  GM21_1475  GTP-dependent nucleic acid-binding protein EngD  60.27 
 
 
364 aa  445  1e-124  Geobacter sp. M21  Bacteria  n/a    normal  0.0116591 
 
 
-
 
NC_002939  GSU0664  GTP-dependent nucleic acid-binding protein EngD  62.47 
 
 
364 aa  447  1e-124  Geobacter sulfurreducens PCA  Bacteria  normal  0.151468  n/a   
 
 
-
 
NC_011146  Gbem_2765  GTP-dependent nucleic acid-binding protein EngD  60.27 
 
 
364 aa  446  1e-124  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2592  GTP-dependent nucleic acid-binding protein EngD  61.64 
 
 
364 aa  446  1e-124  Geobacter lovleyi SZ  Bacteria  hitchhiker  1.45967e-05  n/a   
 
 
-
 
NC_008576  Mmc1_0823  GTP-binding protein YchF  59.19 
 
 
369 aa  442  1e-123  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.80837 
 
 
-
 
NC_008740  Maqu_2368  GTP-dependent nucleic acid-binding protein EngD  60.55 
 
 
363 aa  444  1e-123  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A2043  GTP-dependent nucleic acid-binding protein EngD  61.88 
 
 
363 aa  443  1e-123  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0072  GTP-dependent nucleic acid-binding protein EngD  62.43 
 
 
367 aa  444  1e-123  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1012  GTP-dependent nucleic acid-binding protein EngD  60.82 
 
 
363 aa  441  1e-122  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00042531  normal  0.0638456 
 
 
-
 
NC_009801  EcE24377A_1350  GTP-dependent nucleic acid-binding protein EngD  59.89 
 
 
363 aa  439  1e-122  Escherichia coli E24377A  Bacteria  normal  0.0630481  n/a   
 
 
-
 
NC_008321  Shewmr4_1008  GTP-dependent nucleic acid-binding protein EngD  60.82 
 
 
363 aa  441  1e-122  Shewanella sp. MR-4  Bacteria  hitchhiker  2.08433e-07  normal  0.179939 
 
 
-
 
NC_009800  EcHS_A1308  GTP-dependent nucleic acid-binding protein EngD  59.89 
 
 
363 aa  439  1e-122  Escherichia coli HS  Bacteria  normal  0.253077  n/a   
 
 
-
 
NC_010468  EcolC_2423  GTP-dependent nucleic acid-binding protein EngD  59.89 
 
 
363 aa  439  1e-122  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0847638 
 
 
-
 
NC_011353  ECH74115_1684  GTP-dependent nucleic acid-binding protein EngD  59.89 
 
 
363 aa  439  1e-122  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000467912  normal  0.464774 
 
 
-
 
NC_012912  Dd1591_2063  GTP-dependent nucleic acid-binding protein EngD  60.44 
 
 
363 aa  439  1e-122  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0231  GTP-dependent nucleic acid-binding protein EngD  61.16 
 
 
363 aa  438  1e-122  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.375519 
 
 
-
 
NC_010658  SbBS512_E1367  GTP-dependent nucleic acid-binding protein EngD  59.89 
 
 
363 aa  439  1e-122  Shigella boydii CDC 3083-94  Bacteria  normal  0.37474  n/a   
 
 
-
 
CP001637  EcDH1_2444  GTP-binding protein YchF  59.89 
 
 
363 aa  439  1e-122  Escherichia coli DH1  Bacteria  normal  0.0781916  n/a   
 
 
-
 
NC_012560  Avin_41550  GTP-dependent nucleic acid-binding protein EngD  60.87 
 
 
366 aa  440  1e-122  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1073  GTP-dependent nucleic acid-binding protein EngD  60.82 
 
 
363 aa  441  1e-122  Shewanella sp. MR-7  Bacteria  unclonable  5.96539e-06  normal  0.137935 
 
 
-
 
NC_010498  EcSMS35_1939  GTP-dependent nucleic acid-binding protein EngD  59.89 
 
 
363 aa  439  1e-122  Escherichia coli SMS-3-5  Bacteria  normal  0.256808  normal  0.0918473 
 
 
-
 
NC_003910  CPS_3560  GTP-dependent nucleic acid-binding protein EngD  58.36 
 
 
363 aa  437  1e-121  Colwellia psychrerythraea 34H  Bacteria  normal  0.0853075  n/a   
 
 
-
 
NC_012892  B21_01188  hypothetical protein  59.62 
 
 
363 aa  437  1e-121  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1185  GTP-dependent nucleic acid-binding protein EngD  59.73 
 
 
363 aa  436  1e-121  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_1052  GTP-dependent nucleic acid-binding protein EngD  60.6 
 
 
366 aa  437  1e-121  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.133345 
 
 
-
 
CP001509  ECD_01178  translation-associated GTPase  59.62 
 
 
363 aa  437  1e-121  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2075  GTP-dependent nucleic acid-binding protein EngD  60.71 
 
 
363 aa  436  1e-121  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0577109  n/a   
 
 
-
 
NC_007204  Psyc_0894  GTP-dependent nucleic acid-binding protein EngD  58.52 
 
 
363 aa  435  1e-121  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.943704 
 
 
-
 
NC_012880  Dd703_1849  GTP-dependent nucleic acid-binding protein EngD  60.71 
 
 
363 aa  436  1e-121  Dickeya dadantii Ech703  Bacteria  normal  0.476561  n/a   
 
 
-
 
NC_011205  SeD_A1537  GTP-dependent nucleic acid-binding protein EngD  59.89 
 
 
363 aa  437  1e-121  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.0518912 
 
 
-
 
NC_009783  VIBHAR_01244  GTP-dependent nucleic acid-binding protein EngD  60.27 
 
 
363 aa  434  1e-121  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011149  SeAg_B1353  GTP-dependent nucleic acid-binding protein EngD  59.89 
 
 
363 aa  437  1e-121  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0280261  n/a   
 
 
-
 
NC_007963  Csal_1521  GTP-dependent nucleic acid-binding protein EngD  59.18 
 
 
363 aa  436  1e-121  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.00078802  n/a   
 
 
-
 
NC_010159  YpAngola_A2468  GTP-dependent nucleic acid-binding protein EngD  60.71 
 
 
363 aa  436  1e-121  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_2187  GTP-dependent nucleic acid-binding protein EngD  60.71 
 
 
363 aa  436  1e-121  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2852  GTP-dependent nucleic acid-binding protein EngD  60.27 
 
 
363 aa  436  1e-121  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  9.59871e-08  n/a   
 
 
-
 
NC_011080  SNSL254_A1917  GTP-dependent nucleic acid-binding protein EngD  59.89 
 
 
363 aa  437  1e-121  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.188872  normal 
 
 
-
 
NC_011083  SeHA_C1981  GTP-dependent nucleic acid-binding protein EngD  59.89 
 
 
363 aa  437  1e-121  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.262835  normal 
 
 
-
 
NC_011094  SeSA_A1923  GTP-dependent nucleic acid-binding protein EngD  59.89 
 
 
363 aa  437  1e-121  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1320  GTP-binding protein YchF  60.27 
 
 
364 aa  436  1e-121  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0348  GTP-binding protein YchF  60.55 
 
 
364 aa  437  1e-121  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.214484 
 
 
-
 
NC_009012  Cthe_0877  GTP-dependent nucleic acid-binding protein EngD  59.45 
 
 
364 aa  432  1e-120  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  7.173e-05  n/a   
 
 
-
 
NC_011071  Smal_0729  GTP-dependent nucleic acid-binding protein EngD  60.82 
 
 
363 aa  431  1e-120  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.195825 
 
 
-
 
NC_009483  Gura_3679  GTP-dependent nucleic acid-binding protein EngD  60.55 
 
 
364 aa  432  1e-120  Geobacter uraniireducens Rf4  Bacteria  normal  0.0104752  n/a   
 
 
-
 
NC_009052  Sbal_3257  GTP-dependent nucleic acid-binding protein EngD  59.18 
 
 
363 aa  432  1e-120  Shewanella baltica OS155  Bacteria  hitchhiker  7.20126e-08  n/a   
 
 
-
 
NC_013161  Cyan8802_3030  GTP-dependent nucleic acid-binding protein EngD  59.5 
 
 
363 aa  433  1e-120  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2571  GTP-dependent nucleic acid-binding protein EngD  59.73 
 
 
363 aa  432  1e-120  Shewanella amazonensis SB2B  Bacteria  hitchhiker  6.9275e-07  normal  0.128339 
 
 
-
 
NC_004578  PSPTO_1101  GTP-binding protein YchF  60.33 
 
 
366 aa  432  1e-120  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1110  GTP-dependent nucleic acid-binding protein EngD  59.18 
 
 
363 aa  432  1e-120  Shewanella baltica OS223  Bacteria  hitchhiker  1.14321e-07  hitchhiker  1.31179e-09 
 
 
-
 
NC_007954  Sden_0819  GTP-dependent nucleic acid-binding protein EngD  61.37 
 
 
363 aa  432  1e-120  Shewanella denitrificans OS217  Bacteria  hitchhiker  6.42371e-07  n/a   
 
 
-
 
NC_011726  PCC8801_3090  GTP-dependent nucleic acid-binding protein EngD  59.5 
 
 
363 aa  433  1e-120  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
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