220 homologs were found in PanDaTox collection
for query gene RPD_3805 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007958  RPD_3805  cyclic nucleotide-binding  100 
 
 
263 aa  540  1e-153  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4068  Crp/FNR family transcriptional regulator  87.3 
 
 
247 aa  448  1e-125  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.936766  normal 
 
 
-
 
NC_011004  Rpal_1184  transcriptional regulator, Crp/Fnr family  69.04 
 
 
243 aa  353  2e-96  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6056  Crp/FNR family transcriptional regulator  66.53 
 
 
241 aa  328  4e-89  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3832  transcriptional regulator, Crp/Fnr family  40.52 
 
 
245 aa  177  1e-43  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2447  cyclic nucleotide-binding protein  40.85 
 
 
255 aa  174  1.9999999999999998e-42  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  37.84 
 
 
249 aa  167  2e-40  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  35.98 
 
 
244 aa  165  8e-40  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal 
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  37.6 
 
 
247 aa  165  9e-40  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  36.64 
 
 
248 aa  164  1.0000000000000001e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  36.13 
 
 
244 aa  162  5.0000000000000005e-39  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  36.13 
 
 
244 aa  162  7e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  38.1 
 
 
247 aa  161  1e-38  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  37.23 
 
 
247 aa  157  1e-37  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  37.85 
 
 
250 aa  157  2e-37  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal 
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  37.56 
 
 
244 aa  153  2.9999999999999998e-36  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  34.35 
 
 
234 aa  153  2.9999999999999998e-36  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0477074 
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  35.42 
 
 
246 aa  149  4e-35  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  33.65 
 
 
246 aa  144  1e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal 
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  33.33 
 
 
239 aa  144  1e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  34.58 
 
 
246 aa  142  4e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  36.23 
 
 
225 aa  138  7.999999999999999e-32  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0893417 
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  33.75 
 
 
255 aa  138  8.999999999999999e-32  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  35.19 
 
 
249 aa  137  2e-31  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  34.18 
 
 
254 aa  136  3.0000000000000003e-31  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  35.22 
 
 
243 aa  135  5e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000118444 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  32.9 
 
 
384 aa  133  3e-30  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0953  CRP/FNR family transcriptional regulator  33.19 
 
 
254 aa  133  3e-30  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  32.61 
 
 
376 aa  133  3.9999999999999996e-30  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal 
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  33.33 
 
 
246 aa  131  1.0000000000000001e-29  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  33.76 
 
 
259 aa  130  2.0000000000000002e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.161686 
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  33.76 
 
 
259 aa  130  2.0000000000000002e-29  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.996332 
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  32.76 
 
 
236 aa  128  9.000000000000001e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  31.6 
 
 
384 aa  128  1.0000000000000001e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  32.49 
 
 
255 aa  125  7e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  35.2 
 
 
249 aa  124  1e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.371562 
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  32.05 
 
 
259 aa  125  1e-27  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  35.2 
 
 
249 aa  124  2e-27  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  31.9 
 
 
255 aa  123  3e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  34.02 
 
 
257 aa  122  5e-27  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00106309 
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  31.6 
 
 
281 aa  119  3e-26  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  29.49 
 
 
259 aa  119  3.9999999999999996e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00010652 
 
 
-
 
NC_010505  Mrad2831_2609  Crp/FNR family transcriptional regulator  33.79 
 
 
293 aa  119  6e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.325512  normal 
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  32.2 
 
 
268 aa  118  9.999999999999999e-26  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_008686  Pden_2108  CRP/FNR family transcriptional regulator  32.02 
 
 
243 aa  115  6e-25  Paracoccus denitrificans PD1222  Bacteria  normal  0.819689  normal  0.0771917 
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  31.88 
 
 
317 aa  114  1.0000000000000001e-24  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  30.53 
 
 
298 aa  110  2.0000000000000002e-23  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  31 
 
 
299 aa  110  2.0000000000000002e-23  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  28.88 
 
 
267 aa  110  2.0000000000000002e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  29.69 
 
 
307 aa  107  2e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5658  cyclic nucleotide-binding protein  30.52 
 
 
245 aa  103  3e-21  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  30.26 
 
 
281 aa  103  4e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.999867 
 
 
-
 
NC_009511  Swit_0955  CRP/FNR family transcriptional regulator  32.02 
 
 
226 aa  102  5e-21  Sphingomonas wittichii RW1  Bacteria  normal  0.869769  normal 
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  29.31 
 
 
315 aa  100  2e-20  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  30.13 
 
 
263 aa  97.4  2e-19  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal 
 
 
-
 
NC_009485  BBta_2391  CRP/FNR family transcriptional regulator  25 
 
 
274 aa  96.3  5e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  26.38 
 
 
246 aa  95.9  7e-19  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  25.96 
 
 
246 aa  94.7  1e-18  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3741  transcriptional regulator, Crp/Fnr family  28.18 
 
 
242 aa  94.4  2e-18  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6130  putative transcriptional regulator, Crp/Fnr family  29.67 
 
 
244 aa  88.2  1e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  26.16 
 
 
243 aa  87.4  2e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011893  Mnod_8765  putative transcriptional regulator, Crp/Fnr family  26.75 
 
 
244 aa  86.3  5e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474033  n/a   
 
 
-
 
NC_004311  BRA0414  Crp/FNR family transcriptional regulator  26.07 
 
 
252 aa  79.7  0.00000000000005  Brucella suis 1330  Bacteria  normal  0.766284  n/a   
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  25.12 
 
 
243 aa  79.7  0.00000000000005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0357  Crp/FNR family transcriptional regulator  26.07 
 
 
252 aa  79.7  0.00000000000005  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  28 
 
 
252 aa  78.6  0.0000000000001  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  25 
 
 
243 aa  77.4  0.0000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.173486 
 
 
-
 
NC_010172  Mext_3499  CRP/FNR family transcriptional regulator  26.23 
 
 
286 aa  76.3  0.0000000000005  Methylobacterium extorquens PA1  Bacteria  normal  0.519814  normal 
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  23.28 
 
 
250 aa  75.9  0.0000000000006  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_007963  Csal_0983  Crp/FNR family transcriptional regulator  24.12 
 
 
245 aa  75.1  0.000000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  28.09 
 
 
230 aa  73.9  0.000000000003  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5597  putative transcriptional regulator, Crp/Fnr family  30.53 
 
 
246 aa  73.2  0.000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0675352  n/a   
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  25.96 
 
 
252 aa  72  0.000000000009  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  25.66 
 
 
262 aa  71.6  0.00000000001  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  26.61 
 
 
253 aa  71.2  0.00000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4822  cyclic nucleotide-binding protein  26.01 
 
 
243 aa  70.5  0.00000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.379105  normal  0.123433 
 
 
-
 
NC_008254  Meso_2575  Crp/FNR family transcriptional regulator  29.03 
 
 
240 aa  66.2  0.0000000005  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2400  CRP/FNR family transcriptional regulator  23.73 
 
 
250 aa  65.9  0.0000000006  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0375093 
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  20.69 
 
 
241 aa  65.9  0.0000000007  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  26.9 
 
 
257 aa  64.7  0.000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  27.12 
 
 
250 aa  64.7  0.000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  24.39 
 
 
256 aa  65.1  0.000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.858211 
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  25.79 
 
 
276 aa  64.7  0.000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  25 
 
 
235 aa  64.3  0.000000002  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  23.73 
 
 
242 aa  63.2  0.000000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1153  transcriptional regulator, Crp/Fnr family  25.99 
 
 
250 aa  61.2  0.00000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  24.54 
 
 
253 aa  60.5  0.00000003  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_009049  Rsph17029_2934  cyclic nucleotide-binding protein  27.93 
 
 
249 aa  59.7  0.00000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1275  Crp/Fnr family transcriptional regulator  27.93 
 
 
249 aa  59.7  0.00000005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3568  cyclic nucleotide-binding domain-containing protein  25.45 
 
 
242 aa  59.7  0.00000005  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0490  CRP/FNR family transcriptional regulator  25.29 
 
 
256 aa  57.4  0.0000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  24.39 
 
 
249 aa  57.4  0.0000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  25.14 
 
 
231 aa  57.4  0.0000003  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  28.12 
 
 
262 aa  56.6  0.0000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  21.84 
 
 
263 aa  56.2  0.0000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  24.71 
 
 
250 aa  56.2  0.0000005  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  26.67 
 
 
226 aa  56.2  0.0000006  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  23.2 
 
 
250 aa  54.7  0.000001  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_011761  AFE_0270  transcriptional regulator, Crp/Fnr family  25 
 
 
233 aa  53.9  0.000003  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.479827  n/a   
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  21.99 
 
 
250 aa  53.5  0.000003  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
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