More than 300 homologs were found in PanDaTox collection
for query gene RPD_3605 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_1688  Acyl-CoA dehydrogenase-like  93.73 
 
 
415 aa  812    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.78575  normal  0.535517 
 
 
-
 
NC_007778  RPB_1689  Acyl-CoA dehydrogenase-like  81.16 
 
 
415 aa  713    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.777163 
 
 
-
 
NC_009485  BBta_7117  putative acyl-CoA dehydrogenase  84.82 
 
 
414 aa  734    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.691802 
 
 
-
 
NC_007925  RPC_2198  acyl-CoA dehydrogenase-like  84.78 
 
 
413 aa  741    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.659729  normal 
 
 
-
 
NC_007958  RPD_3604  acyl-CoA dehydrogenase-like  78.26 
 
 
414 aa  692    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0502899  normal 
 
 
-
 
NC_007958  RPD_3605  acyl-CoA dehydrogenase-like  100 
 
 
415 aa  855    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.75816  normal 
 
 
-
 
NC_009485  BBta_7116  putative acyl-CoA dehydrogenase  78.8 
 
 
415 aa  696    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1909  acyl-CoA dehydrogenase domain protein  93.25 
 
 
415 aa  816    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.337795  n/a   
 
 
-
 
NC_011004  Rpal_1910  acyl-CoA dehydrogenase domain protein  79.71 
 
 
414 aa  707    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1604  acyl-CoA dehydrogenase domain-containing protein  60.72 
 
 
432 aa  546  1e-154  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3426  acyl-CoA dehydrogenase domain-containing protein  53.53 
 
 
407 aa  457  1e-127  Caulobacter sp. K31  Bacteria  normal  0.751929  normal  0.216447 
 
 
-
 
NC_009719  Plav_0965  acyl-CoA dehydrogenase domain-containing protein  53.53 
 
 
409 aa  447  1.0000000000000001e-124  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1032  acyl-CoA dehydrogenase domain-containing protein  50.6 
 
 
411 aa  414  1e-114  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.605452  normal 
 
 
-
 
NC_009511  Swit_3397  acyl-CoA dehydrogenase domain-containing protein  48.43 
 
 
403 aa  378  1e-103  Sphingomonas wittichii RW1  Bacteria  hitchhiker  0.00717177  decreased coverage  0.00584794 
 
 
-
 
NC_008048  Sala_1636  acyl-CoA dehydrogenase-like protein  45.57 
 
 
401 aa  331  1e-89  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.552524 
 
 
-
 
NC_008048  Sala_1632  acyl-CoA dehydrogenase-like protein  45.3 
 
 
407 aa  330  4e-89  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0101171  normal 
 
 
-
 
NC_013739  Cwoe_0736  acyl-CoA dehydrogenase domain protein  42.11 
 
 
403 aa  324  2e-87  Conexibacter woesei DSM 14684  Bacteria  normal  0.453117  normal 
 
 
-
 
NC_008048  Sala_1246  acyl-CoA dehydrogenase-like protein  45.34 
 
 
384 aa  314  1.9999999999999998e-84  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.235066  normal 
 
 
-
 
NC_009380  Strop_2813  acyl-CoA dehydrogenase domain-containing protein  40.35 
 
 
380 aa  294  2e-78  Salinispora tropica CNB-440  Bacteria  normal  0.249465  normal 
 
 
-
 
NC_008726  Mvan_0394  acyl-CoA dehydrogenase domain-containing protein  44.23 
 
 
398 aa  292  1e-77  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.254856  normal  0.326104 
 
 
-
 
NC_009077  Mjls_5569  acyl-CoA dehydrogenase domain-containing protein  44.32 
 
 
396 aa  288  1e-76  Mycobacterium sp. JLS  Bacteria  normal  0.313382  normal 
 
 
-
 
NC_009338  Mflv_0344  acyl-CoA dehydrogenase domain-containing protein  43.89 
 
 
394 aa  286  4e-76  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_5188  acyl-CoA dehydrogenase-like protein  44.04 
 
 
396 aa  286  4e-76  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5277  acyl-CoA dehydrogenase domain-containing protein  44.04 
 
 
396 aa  286  4e-76  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7781  acyl-CoA dehydrogenase domain-containing protein  43.96 
 
 
395 aa  286  5e-76  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_2698  acyl-CoA dehydrogenase domain-containing protein  44.23 
 
 
390 aa  285  9e-76  Thermobispora bispora DSM 43833  Bacteria  normal  0.96365  normal  0.79248 
 
 
-
 
NC_013739  Cwoe_0960  acyl-CoA dehydrogenase domain protein  39.6 
 
 
378 aa  285  1.0000000000000001e-75  Conexibacter woesei DSM 14684  Bacteria  normal  0.489478  normal 
 
 
-
 
NC_013131  Caci_1155  acyl-CoA dehydrogenase domain protein  46.69 
 
 
396 aa  282  6.000000000000001e-75  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6825  dehydrogenase family protein  39.27 
 
 
393 aa  282  8.000000000000001e-75  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.178037 
 
 
-
 
NC_013510  Tcur_1475  acyl-CoA dehydrogenase domain protein  42.78 
 
 
397 aa  280  5e-74  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0513972  n/a   
 
 
-
 
NC_007333  Tfu_2309  putative acyl-CoA dehydrogenase  42.7 
 
 
411 aa  276  6e-73  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_0803  acyl-CoA dehydrogenase domain-containing protein  39.04 
 
 
378 aa  275  9e-73  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5572  acyl-CoA dehydrogenase domain-containing protein  44.11 
 
 
398 aa  275  1.0000000000000001e-72  Frankia sp. EAN1pec  Bacteria  normal  0.98735  normal 
 
 
-
 
NC_013510  Tcur_3342  acyl-CoA dehydrogenase domain protein  38.93 
 
 
393 aa  274  3e-72  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_16750  acyl-CoA dehydrogenase  42.55 
 
 
403 aa  265  1e-69  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.73205  normal 
 
 
-
 
NC_013131  Caci_1367  acyl-CoA dehydrogenase domain protein  36.86 
 
 
400 aa  262  6e-69  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_2574  acyl-CoA dehydrogenase domain-containing protein  38.4 
 
 
385 aa  258  1e-67  Mycobacterium sp. JLS  Bacteria  normal  0.762648  normal 
 
 
-
 
CP001800  Ssol_0320  acyl-CoA dehydrogenase domain protein  37.63 
 
 
370 aa  258  2e-67  Sulfolobus solfataricus 98/2  Archaea  normal  0.25734  n/a   
 
 
-
 
NC_014158  Tpau_1861  acyl-CoA dehydrogenase domain protein  41.1 
 
 
395 aa  257  2e-67  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2909  acyl-CoA dehydrogenase domain-containing protein  42.32 
 
 
396 aa  257  3e-67  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.25619  normal  0.0238889 
 
 
-
 
NC_013510  Tcur_2706  acyl-CoA dehydrogenase domain protein  37.09 
 
 
383 aa  254  2.0000000000000002e-66  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0953492  n/a   
 
 
-
 
NC_009077  Mjls_4064  acyl-CoA dehydrogenase domain-containing protein  37.13 
 
 
390 aa  253  3e-66  Mycobacterium sp. JLS  Bacteria  normal  normal  0.725849 
 
 
-
 
NC_008699  Noca_4134  acyl-CoA dehydrogenase domain-containing protein  37.79 
 
 
413 aa  254  3e-66  Nocardioides sp. JS614  Bacteria  normal  0.355452  n/a   
 
 
-
 
NC_008726  Mvan_0403  acyl-CoA dehydrogenase domain-containing protein  37.78 
 
 
737 aa  253  3e-66  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0875  acyl-CoA dehydrogenase-like protein  35.91 
 
 
383 aa  253  6e-66  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0939  acyl-CoA dehydrogenase-like  36.75 
 
 
392 aa  252  1e-65  Frankia sp. CcI3  Bacteria  normal  0.0130462  normal  0.579337 
 
 
-
 
NC_009077  Mjls_4096  acyl-CoA dehydrogenase domain-containing protein  33.91 
 
 
396 aa  252  1e-65  Mycobacterium sp. JLS  Bacteria  normal  0.0624184  normal 
 
 
-
 
NC_013595  Sros_2091  acyl-CoA dehydrogenase domain-containing protein  38.14 
 
 
381 aa  251  2e-65  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0366  acyl-CoA dehydrogenase-like protein  41.59 
 
 
730 aa  246  4e-64  Mycobacterium sp. MCS  Bacteria  normal  0.235849  n/a   
 
 
-
 
NC_009077  Mjls_0355  acyl-CoA dehydrogenase domain-containing protein  41.59 
 
 
730 aa  246  4e-64  Mycobacterium sp. JLS  Bacteria  normal  0.353074  normal 
 
 
-
 
NC_008705  Mkms_0376  acyl-CoA dehydrogenase domain-containing protein  41.59 
 
 
730 aa  246  4e-64  Mycobacterium sp. KMS  Bacteria  normal  0.262889  normal 
 
 
-
 
NC_009921  Franean1_5603  acyl-CoA dehydrogenase domain-containing protein  34.84 
 
 
462 aa  245  9.999999999999999e-64  Frankia sp. EAN1pec  Bacteria  normal  0.447806  hitchhiker  0.00691492 
 
 
-
 
NC_009719  Plav_1805  acyl-CoA dehydrogenase domain-containing protein  36.1 
 
 
397 aa  245  9.999999999999999e-64  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.337752  normal 
 
 
-
 
NC_009565  TBFG_10275  acyl-CoA dehydrogenase fadE6  40.41 
 
 
731 aa  243  3e-63  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0482205 
 
 
-
 
CP001800  Ssol_2123  acyl-CoA dehydrogenase domain protein  36.67 
 
 
363 aa  243  6e-63  Sulfolobus solfataricus 98/2  Archaea  unclonable  0.000012052  n/a   
 
 
-
 
NC_009338  Mflv_0335  acyl-CoA dehydrogenase domain-containing protein  36.52 
 
 
728 aa  242  7e-63  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2177  acyl-CoA dehydrogenase domain protein  39.37 
 
 
732 aa  242  9e-63  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.00000163847  n/a   
 
 
-
 
NC_009719  Plav_1060  acyl-CoA dehydrogenase domain-containing protein  33.25 
 
 
397 aa  242  9e-63  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.596056  normal 
 
 
-
 
NC_007510  Bcep18194_A5560  Acyl-CoA dehydrogenase  34.72 
 
 
398 aa  242  1e-62  Burkholderia sp. 383  Bacteria  normal  normal  0.198235 
 
 
-
 
NC_010338  Caul_1447  acyl-CoA dehydrogenase domain-containing protein  37.91 
 
 
401 aa  241  2e-62  Caulobacter sp. K31  Bacteria  normal  normal  0.0993289 
 
 
-
 
NC_013510  Tcur_3998  acyl-CoA dehydrogenase domain protein  39.3 
 
 
734 aa  241  2e-62  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0183743  n/a   
 
 
-
 
NC_010508  Bcenmc03_2256  acyl-CoA dehydrogenase domain-containing protein  34.56 
 
 
398 aa  240  2.9999999999999997e-62  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I1078  acyl-CoA dehydrogenase domain-containing protein  35.44 
 
 
398 aa  239  4e-62  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0801  acyl-CoA dehydrogenase domain-containing protein  39.02 
 
 
736 aa  239  5e-62  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3192  putative pimeloyl-CoA dehydrogenase (large subunit), PimC-like  34.96 
 
 
398 aa  239  5e-62  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3589  acyl-CoA dehydrogenase domain-containing protein  35.66 
 
 
404 aa  239  5e-62  Frankia sp. EAN1pec  Bacteria  normal  normal  0.646816 
 
 
-
 
NC_008060  Bcen_1620  acyl-CoA dehydrogenase-like  34.23 
 
 
398 aa  239  5.999999999999999e-62  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2232  acyl-CoA dehydrogenase domain-containing protein  34.23 
 
 
398 aa  239  5.999999999999999e-62  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2149  acyl-CoA dehydrogenase domain-containing protein  34.31 
 
 
398 aa  239  9e-62  Burkholderia ambifaria MC40-6  Bacteria  normal  0.324611  normal  0.360268 
 
 
-
 
NC_008726  Mvan_4006  acyl-CoA dehydrogenase domain-containing protein  34.67 
 
 
419 aa  239  9e-62  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_17890  acyl-CoA dehydrogenase  38.59 
 
 
402 aa  238  1e-61  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0953451  normal  0.548212 
 
 
-
 
NC_009485  BBta_0702  putative acyl-CoA dehydrogenase  36.34 
 
 
394 aa  238  2e-61  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2334  acyl-CoA dehydrogenase domain-containing protein  37.38 
 
 
400 aa  238  2e-61  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.615469 
 
 
-
 
NC_009074  BURPS668_1307  acyl-CoA dehydrogenase  33.66 
 
 
398 aa  237  3e-61  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4613  acyl-CoA dehydrogenase domain protein  35.32 
 
 
394 aa  237  3e-61  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_2270  acyl-CoA dehydrogenase domain-containing protein  33.99 
 
 
398 aa  237  3e-61  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1453  putative acyl-CoA dehydrogenase family protein  33.66 
 
 
398 aa  236  5.0000000000000005e-61  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0720  acyl-CoA dehydrogenase domain-containing protein  33.66 
 
 
398 aa  236  5.0000000000000005e-61  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1316  acyl-CoA dehydrogenase  33.66 
 
 
398 aa  236  5.0000000000000005e-61  Burkholderia pseudomallei 1106a  Bacteria  normal  0.23333  n/a   
 
 
-
 
NC_009921  Franean1_2719  acyl-CoA dehydrogenase domain-containing protein  32.54 
 
 
429 aa  236  5.0000000000000005e-61  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A1147  acyl-CoA dehydrogenase  33.66 
 
 
398 aa  236  5.0000000000000005e-61  Burkholderia mallei SAVP1  Bacteria  normal  0.383138  n/a   
 
 
-
 
NC_009080  BMA10247_0430  acyl-CoA dehydrogenase  33.66 
 
 
398 aa  236  5.0000000000000005e-61  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3797  acyl-CoA dehydrogenase domain protein  39 
 
 
694 aa  236  5.0000000000000005e-61  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0496  acyl-CoA dehydrogenase domain-containing protein  35.12 
 
 
400 aa  235  1.0000000000000001e-60  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.954912  normal 
 
 
-
 
NC_010084  Bmul_1045  acyl-CoA dehydrogenase domain-containing protein  34.79 
 
 
398 aa  235  1.0000000000000001e-60  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0868009  normal  0.228879 
 
 
-
 
NC_011004  Rpal_5285  acyl-CoA dehydrogenase domain protein  36.34 
 
 
394 aa  234  2.0000000000000002e-60  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.244143  n/a   
 
 
-
 
NC_009511  Swit_3633  acyl-CoA dehydrogenase domain-containing protein  36.07 
 
 
393 aa  234  2.0000000000000002e-60  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.752817 
 
 
-
 
NC_010681  Bphyt_1362  acyl-CoA dehydrogenase domain protein  34.39 
 
 
398 aa  234  3e-60  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0703001  decreased coverage  0.000728046 
 
 
-
 
NC_008048  Sala_1104  acyl-CoA dehydrogenase-like protein  33.74 
 
 
397 aa  234  3e-60  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.289526  normal 
 
 
-
 
NC_009719  Plav_1872  acyl-CoA dehydrogenase domain-containing protein  34.38 
 
 
397 aa  233  3e-60  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.364161 
 
 
-
 
NC_007958  RPD_4384  acyl-CoA dehydrogenase-like  35.99 
 
 
398 aa  233  4.0000000000000004e-60  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.292167  normal 
 
 
-
 
NC_009380  Strop_2615  acyl-CoA dehydrogenase domain-containing protein  36.62 
 
 
386 aa  233  5e-60  Salinispora tropica CNB-440  Bacteria  normal  0.766837  normal 
 
 
-
 
NC_009719  Plav_1807  acyl-CoA dehydrogenase domain-containing protein  33.98 
 
 
399 aa  233  5e-60  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.167167  normal 
 
 
-
 
NC_009953  Sare_2814  acyl-CoA dehydrogenase domain-containing protein  36.93 
 
 
386 aa  233  6e-60  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00382252 
 
 
-
 
NC_009921  Franean1_2922  acyl-CoA dehydrogenase domain-containing protein  33.5 
 
 
416 aa  231  1e-59  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2603  acyl-CoA dehydrogenase domain protein  38.38 
 
 
719 aa  231  2e-59  Thermomonospora curvata DSM 43183  Bacteria  normal  0.035645  n/a   
 
 
-
 
NC_010511  M446_0233  pimeloyl-CoA dehydrogenase, large subunit  33.41 
 
 
400 aa  230  3e-59  Methylobacterium sp. 4-46  Bacteria  normal  0.172287  normal  0.0105147 
 
 
-
 
NC_009901  Spea_2176  acyl-CoA dehydrogenase domain-containing protein  33.42 
 
 
396 aa  230  4e-59  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3835  acyl-CoA dehydrogenase domain protein  33.5 
 
 
382 aa  229  8e-59  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4675  Acyl-CoA dehydrogenase-like  35.48 
 
 
397 aa  228  1e-58  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
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