More than 300 homologs were found in PanDaTox collection
for query gene RPD_2783 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007958  RPD_2783  response regulator receiver  100 
 
 
123 aa  249  1e-65  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.636371 
 
 
-
 
NC_007778  RPB_2738  response regulator receiver domain-containing protein  90.24 
 
 
123 aa  224  3e-58  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.886685 
 
 
-
 
NC_011004  Rpal_3180  response regulator receiver protein  89.34 
 
 
124 aa  219  9.999999999999999e-57  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0167969  n/a   
 
 
-
 
NC_007925  RPC_2520  response regulator receiver domain-containing protein  79.51 
 
 
125 aa  201  2e-51  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.113297  normal  0.478353 
 
 
-
 
NC_009485  BBta_4411  putative response regulator receiver (CheY-like protein)  77.59 
 
 
131 aa  188  2e-47  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.514484 
 
 
-
 
NC_007964  Nham_1793  response regulator receiver domain-containing protein  75.86 
 
 
126 aa  186  1e-46  Nitrobacter hamburgensis X14  Bacteria  normal  0.244756  n/a   
 
 
-
 
NC_007406  Nwi_1774  response regulator receiver  68.64 
 
 
126 aa  175  2e-43  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0498529  decreased coverage  0.00379005 
 
 
-
 
NC_012850  Rleg_1289  response regulator receiver protein  46.09 
 
 
119 aa  107  8.000000000000001e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.704465  normal 
 
 
-
 
NC_008254  Meso_0621  response regulator receiver protein  38.66 
 
 
120 aa  104  4e-22  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0475  response regulator receiver protein  44.17 
 
 
129 aa  104  4e-22  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2937  response regulator receiver protein  45.13 
 
 
129 aa  103  5e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.972944  normal 
 
 
-
 
NC_011894  Mnod_0022  response regulator receiver and SARP domain protein  44.64 
 
 
142 aa  101  4e-21  Methylobacterium nodulans ORS 2060  Bacteria  hitchhiker  0.000346597  n/a   
 
 
-
 
NC_011369  Rleg2_1200  response regulator receiver protein  41.59 
 
 
126 aa  100  6e-21  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0019  response regulator receiver protein  43.75 
 
 
129 aa  99.4  2e-20  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0611118 
 
 
-
 
NC_010581  Bind_3363  response regulator receiver protein  43.75 
 
 
133 aa  96.3  1e-19  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.387857 
 
 
-
 
NC_010581  Bind_0708  response regulator receiver protein  40.5 
 
 
123 aa  95.5  2e-19  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.795364  normal  0.880104 
 
 
-
 
NC_011757  Mchl_0440  response regulator receiver protein  43.36 
 
 
130 aa  95.1  3e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0544928  normal  0.588008 
 
 
-
 
NC_010172  Mext_0407  response regulator receiver  43.36 
 
 
130 aa  95.1  3e-19  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.459485 
 
 
-
 
NC_007959  Nham_4155  response regulator receiver domain-containing protein  38.39 
 
 
123 aa  94.7  4e-19  Nitrobacter hamburgensis X14  Bacteria  normal  0.918011  n/a   
 
 
-
 
NC_010505  Mrad2831_2089  response regulator receiver protein  46.94 
 
 
152 aa  90.5  7e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.775144 
 
 
-
 
NC_009511  Swit_3435  response regulator receiver protein  42.73 
 
 
121 aa  89.7  1e-17  Sphingomonas wittichii RW1  Bacteria  normal  0.465011  normal  0.396609 
 
 
-
 
NC_011666  Msil_2323  response regulator receiver protein  41.82 
 
 
121 aa  89  2e-17  Methylocella silvestris BL2  Bacteria  n/a    normal  0.03657 
 
 
-
 
NC_010338  Caul_0717  response regulator receiver protein  47.66 
 
 
122 aa  88.6  2e-17  Caulobacter sp. K31  Bacteria  normal  0.0892969  normal 
 
 
-
 
NC_010338  Caul_0470  response regulator receiver protein  37.72 
 
 
133 aa  88.2  3e-17  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2608  response regulator receiver protein  46.08 
 
 
114 aa  87  8e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.186263  normal 
 
 
-
 
NC_010338  Caul_0079  signal transduction histidine kinase  38.94 
 
 
639 aa  86.7  1e-16  Caulobacter sp. K31  Bacteria  normal  normal  0.464916 
 
 
-
 
NC_007005  Psyr_2384  response regulator receiver  41.82 
 
 
125 aa  85.5  2e-16  Pseudomonas syringae pv. syringae B728a  Bacteria  decreased coverage  0.00466139  normal  0.125866 
 
 
-
 
NC_011887  Mnod_7970  response regulator receiver and SARP domain protein  37.74 
 
 
160 aa  83.6  8e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.304155  n/a   
 
 
-
 
NC_011894  Mnod_3759  response regulator receiver protein  41.07 
 
 
127 aa  83.2  0.000000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.514361  n/a   
 
 
-
 
NC_011666  Msil_3299  response regulator receiver protein  40.57 
 
 
123 aa  82.4  0.000000000000002  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00414312 
 
 
-
 
NC_004578  PSPTO_2651  response regulator  40.91 
 
 
125 aa  80.9  0.000000000000006  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  hitchhiker  0.00566392  n/a   
 
 
-
 
NC_008254  Meso_2032  response regulator receiver protein  41.44 
 
 
125 aa  80.9  0.000000000000006  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6449  response regulator receiver protein  39.25 
 
 
121 aa  79.7  0.00000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1182  response regulator receiver modulated GAF sensor protein  39.83 
 
 
846 aa  79.3  0.00000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.75997  n/a   
 
 
-
 
NC_010581  Bind_1267  response regulator receiver/SARP domain-containing protein  36.94 
 
 
134 aa  79  0.00000000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  decreased coverage  0.00862788 
 
 
-
 
NC_010505  Mrad2831_4234  response regulator receiver protein  40.19 
 
 
121 aa  78.6  0.00000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0312747 
 
 
-
 
NC_009719  Plav_0358  signal transduction histidine kinase  38.24 
 
 
602 aa  76.6  0.0000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4798  response regulator receiver protein  37.17 
 
 
120 aa  76.6  0.0000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.107601  normal 
 
 
-
 
NC_011989  Avi_3496  bacteriophytochrome protein  37.82 
 
 
852 aa  75.1  0.0000000000003  Agrobacterium vitis S4  Bacteria  normal  0.552776  n/a   
 
 
-
 
NC_010725  Mpop_1920  response regulator receiver protein  39.81 
 
 
126 aa  74.7  0.0000000000004  Methylobacterium populi BJ001  Bacteria  normal  normal  0.170402 
 
 
-
 
NC_009507  Swit_5346  response regulator receiver protein  34.55 
 
 
118 aa  74.7  0.0000000000004  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1965  response regulator receiver  38.89 
 
 
126 aa  73.6  0.0000000000008  Methylobacterium extorquens PA1  Bacteria  normal  0.132523  normal 
 
 
-
 
NC_011757  Mchl_2241  response regulator receiver protein  38.89 
 
 
126 aa  73.6  0.0000000000008  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.926249 
 
 
-
 
NC_009720  Xaut_2532  response regulator receiver protein  35.14 
 
 
138 aa  73.6  0.0000000000008  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_6265  response regulator receiver protein  36.75 
 
 
136 aa  73.2  0.000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4110  response regulator receiver protein  36.61 
 
 
127 aa  72.8  0.000000000002  Caulobacter sp. K31  Bacteria  hitchhiker  0.00730632  normal  0.59438 
 
 
-
 
NC_011368  Rleg2_5233  putative transcriptional regulator, Crp/Fnr family  34.78 
 
 
384 aa  72  0.000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.222219 
 
 
-
 
NC_010172  Mext_0109  response regulator receiver  36.28 
 
 
120 aa  72.8  0.000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_1396  response regulator receiver domain-containing protein  37.96 
 
 
117 aa  72.4  0.000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.230809  n/a   
 
 
-
 
NC_011071  Smal_2183  response regulator receiver protein  37.38 
 
 
134 aa  72  0.000000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3289  putative PAS/PAC sensor protein  39.09 
 
 
855 aa  69.7  0.00000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.363327  normal  0.145052 
 
 
-
 
NC_010338  Caul_1241  signal transduction histidine kinase  37.5 
 
 
631 aa  69.3  0.00000000002  Caulobacter sp. K31  Bacteria  normal  normal  0.0246477 
 
 
-
 
NC_009507  Swit_5270  signal transduction histidine kinase  33.33 
 
 
559 aa  69.3  0.00000000002  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.909185 
 
 
-
 
NC_008048  Sala_1726  response regulator receiver protein  35.85 
 
 
115 aa  68.2  0.00000000004  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3034  putative PAS/PAC sensor protein  38.18 
 
 
856 aa  67.8  0.00000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0858916  normal 
 
 
-
 
NC_011004  Rpal_2363  response regulator receiver protein  35.45 
 
 
122 aa  67.4  0.00000000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.549917  n/a   
 
 
-
 
NC_007802  Jann_2069  response regulator receiver domain-containing protein  41.67 
 
 
123 aa  67  0.00000000009  Jannaschia sp. CCS1  Bacteria  normal  0.240465  normal  0.487014 
 
 
-
 
NC_011894  Mnod_5707  response regulator receiver protein  34.58 
 
 
127 aa  66.2  0.0000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3337  hypothetical protein  37.96 
 
 
130 aa  66.6  0.0000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.244169  normal  0.34569 
 
 
-
 
NC_010333  Caul_5321  putative sensory transduction regulatory protein  46.05 
 
 
84 aa  65.9  0.0000000002  Caulobacter sp. K31  Bacteria  normal  0.563131  normal  0.70291 
 
 
-
 
NC_010172  Mext_0773  response regulator receiver  35.35 
 
 
149 aa  65.5  0.0000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.863112  normal 
 
 
-
 
NC_009620  Smed_4279  response regulator receiver protein  30.17 
 
 
120 aa  64.7  0.0000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.718019  normal 
 
 
-
 
NC_010510  Mrad2831_6244  response regulator receiver modulated GAF sensor protein  35.09 
 
 
849 aa  63.9  0.0000000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5238  response regulator receiver protein  33.33 
 
 
127 aa  63.2  0.000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.516097  normal  0.262734 
 
 
-
 
NC_011368  Rleg2_5235  response regulator receiver protein  35.85 
 
 
131 aa  62.8  0.000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0801642 
 
 
-
 
NC_007493  RSP_1784  response regulator receiver domain-containing protein  34.34 
 
 
124 aa  63.2  0.000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.474362  n/a   
 
 
-
 
NC_009049  Rsph17029_0431  response regulator receiver protein  34.34 
 
 
124 aa  63.5  0.000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0769354  normal 
 
 
-
 
NC_009485  BBta_6261  putative response regulator receiver (CheY-like protein)  34.58 
 
 
121 aa  62.8  0.000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.235266  normal  0.732793 
 
 
-
 
NC_010511  M446_6401  response regulator receiver protein  33.93 
 
 
126 aa  62.8  0.000000002  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4933  response regulator receiver protein  32.99 
 
 
121 aa  62.4  0.000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.124626  normal  0.430513 
 
 
-
 
NC_009428  Rsph17025_0604  response regulator receiver protein  31.3 
 
 
147 aa  62.4  0.000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0677  putative two component-response regulator receiver (CheY-like protein)  37.23 
 
 
104 aa  62.4  0.000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.339833 
 
 
-
 
NC_009485  BBta_2330  putative bacteriophytochrome  33.63 
 
 
842 aa  61.6  0.000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.766617  normal 
 
 
-
 
NC_011984  Avi_9083  bacteriophytochrome protein  36.61 
 
 
856 aa  61.6  0.000000004  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03021  regulatory protein  31.48 
 
 
126 aa  60.8  0.000000006  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1296  response regulator receiver protein  34.58 
 
 
136 aa  59.7  0.00000001  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0073  response regulator receiver protein  33.62 
 
 
144 aa  58.9  0.00000002  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0646  response regulator receiver domain-containing protein  32.73 
 
 
139 aa  58.5  0.00000003  Nitrobacter hamburgensis X14  Bacteria  normal  0.452757  n/a   
 
 
-
 
NC_011004  Rpal_5004  response regulator receiver protein  37.5 
 
 
118 aa  58.5  0.00000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.325761  n/a   
 
 
-
 
NC_009485  BBta_0251  hypothetical protein  30.7 
 
 
124 aa  58.5  0.00000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3364  response regulator  31.53 
 
 
847 aa  58.2  0.00000004  Pseudomonas putida KT2440  Bacteria  normal  normal  0.427552 
 
 
-
 
NC_007493  RSP_1629  response regulator receiver domain-containing protein  34.21 
 
 
129 aa  58.2  0.00000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.324074  n/a   
 
 
-
 
NC_010322  PputGB1_2586  response regulator receiver modulated GAF sensor protein  34.48 
 
 
847 aa  58.2  0.00000004  Pseudomonas putida GB-1  Bacteria  normal  normal  0.251983 
 
 
-
 
NC_010725  Mpop_2986  response regulator receiver protein  31.58 
 
 
124 aa  57.8  0.00000005  Methylobacterium populi BJ001  Bacteria  normal  0.347118  normal 
 
 
-
 
NC_004310  BR0102  response regulator, putative  32.48 
 
 
125 aa  57.4  0.00000006  Brucella suis 1330  Bacteria  normal  0.248594  n/a   
 
 
-
 
NC_009505  BOV_0099  putative response regulator  32.48 
 
 
124 aa  57.4  0.00000006  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0556  response regulator receiver  32.17 
 
 
140 aa  57.4  0.00000007  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.032469  normal 
 
 
-
 
NC_009512  Pput_2394  putative GAF sensor protein  31.53 
 
 
847 aa  56.6  0.0000001  Pseudomonas putida F1  Bacteria  normal  0.25898  normal 
 
 
-
 
NC_011369  Rleg2_2043  PAS/PAC sensor hybrid histidine kinase  34.75 
 
 
691 aa  55.8  0.0000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.10086  normal 
 
 
-
 
NC_010172  Mext_2866  response regulator receiver  31.53 
 
 
124 aa  55.8  0.0000002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00619  two-component system regulatory protein  36.19 
 
 
107 aa  55.5  0.0000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.401301  n/a   
 
 
-
 
NC_011757  Mchl_3092  response regulator receiver protein  31.53 
 
 
124 aa  55.8  0.0000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0555687  normal  0.395265 
 
 
-
 
NC_010505  Mrad2831_4846  response regulator receiver protein  37.96 
 
 
126 aa  55.1  0.0000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.211413  normal 
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  32.73 
 
 
205 aa  55.1  0.0000003  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_008254  Meso_3106  response regulator receiver protein  32.5 
 
 
152 aa  55.1  0.0000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  32.46 
 
 
229 aa  55.1  0.0000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_009636  Smed_2399  response regulator receiver protein  33.64 
 
 
128 aa  54.3  0.0000005  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0186457 
 
 
-
 
NC_010501  PputW619_2574  response regulator receiver modulated GAF sensor protein  28.95 
 
 
844 aa  53.9  0.0000007  Pseudomonas putida W619  Bacteria  normal  normal  0.969915 
 
 
-
 
NC_009485  BBta_6551  putative response regulator receiver (CheY-like protein)  32.17 
 
 
129 aa  53.9  0.0000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.582154 
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  30.7 
 
 
210 aa  53.5  0.000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
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