More than 300 homologs were found in PanDaTox collection
for query gene RPD_2401 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007958  RPD_2401  response regulator receiver  100 
 
 		 230 aa  457  9.999999999999999e-129  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0808908 
 
 
-
 
NC_007778  RPB_4449  two component LuxR family transcriptional regulator  93.48 
 
 		 230 aa  425  1e-118  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.683214 
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  78.34 
 
 		 226 aa  341  4e-93  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_3423  two component transcriptional regulator, LuxR family  75.11 
 
 		 235 aa  338  5.9999999999999996e-92  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.324081  n/a   
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  76.53 
 
 		 228 aa  334  9e-91  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0916709 
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  73.33 
 
 		 228 aa  333  2e-90  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  74.65 
 
 		 228 aa  327  1.0000000000000001e-88  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_3079  two component LuxR family transcriptional regulator  59.03 
 
 		 233 aa  269  2.9999999999999997e-71  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  57.55 
 
 		 223 aa  251  8.000000000000001e-66  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  51.39 
 
 		 222 aa  218  7.999999999999999e-56  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.280021 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  51.36 
 
 		 221 aa  214  9.999999999999999e-55  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  47.89 
 
 		 220 aa  199  1.9999999999999998e-50  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_007958  RPD_2393  response regulator receiver  58.52 
 
 		 172 aa  193  2e-48  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.820012  normal  0.124287 
 
 
-
 
NC_007778  RPB_4442  response regulator receiver domain-containing protein  71.88 
 
 		 172 aa  192  3e-48  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.591595 
 
 
-
 
NC_011894  Mnod_0855  two component transcriptional regulator, LuxR family  45.33 
 
 		 223 aa  191  7e-48  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.082304  n/a   
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  41.01 
 
 		 217 aa  182  3e-45  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_011894  Mnod_0851  two component transcriptional regulator, LuxR family  40.19 
 
 		 232 aa  172  3.9999999999999995e-42  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  38.03 
 
 		 213 aa  164  1.0000000000000001e-39  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  40 
 
 		 218 aa  160  1e-38  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  39.55 
 
 		 218 aa  159  3e-38  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  39.55 
 
 		 218 aa  159  3e-38  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  37.67 
 
 		 215 aa  159  3e-38  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  40.09 
 
 		 218 aa  158  8e-38  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_0347  two component transcriptional regulator, LuxR family  35.75 
 
 		 222 aa  153  2e-36  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014148  Plim_3764  response regulator receiver  39.07 
 
 		 217 aa  153  2.9999999999999998e-36  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.321181  n/a   
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  38.57 
 
 		 213 aa  152  4e-36  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_1668  response regulator receiver  35.75 
 
 		 222 aa  152  4e-36  Methylobacterium extorquens PA1  Bacteria  normal  0.679138  normal  1 
 
 
-
 
NC_011757  Mchl_1985  two component transcriptional regulator, LuxR family  35.48 
 
 		 222 aa  152  4e-36  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007614  Nmul_A1235  two component LuxR family transcriptional regulator  40.09 
 
 		 211 aa  152  5.9999999999999996e-36  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  38.5 
 
 		 228 aa  151  8.999999999999999e-36  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011071  Smal_1526  two component transcriptional regulator, LuxR family  38.71 
 
 		 215 aa  151  1e-35  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.88337  normal  1 
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  35.35 
 
 		 212 aa  150  2e-35  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_4860  two component transcriptional regulator, LuxR family  39.65 
 
 		 236 aa  150  2e-35  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.142587 
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  36.32 
 
 		 216 aa  148  5e-35  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  36.87 
 
 		 218 aa  148  8e-35  Staphylococcus epidermidis RP62A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  37.62 
 
 		 232 aa  148  8e-35  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU0682  LuxR family DNA-binding response regulator  40.76 
 
 		 215 aa  147  9e-35  Geobacter sulfurreducens PCA  Bacteria  normal  0.874366  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  36.57 
 
 		 217 aa  147  1.0000000000000001e-34  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  36.57 
 
 		 217 aa  147  1.0000000000000001e-34  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  1  n/a   
 
 
-
 
NC_011757  Mchl_4712  two component transcriptional regulator, LuxR family  38.29 
 
 		 236 aa  147  2.0000000000000003e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.37561  normal  1 
 
 
-
 
NC_010172  Mext_4343  response regulator receiver  38.29 
 
 		 236 aa  147  2.0000000000000003e-34  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  37.5 
 
 		 224 aa  146  2.0000000000000003e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  36.65 
 
 		 218 aa  146  3e-34  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal  1 
 
 
-
 
NC_013739  Cwoe_1298  two component transcriptional regulator, LuxR family  34.55 
 
 		 228 aa  145  4.0000000000000006e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.70055  normal  1 
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  36.79 
 
 		 232 aa  144  9e-34  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  33.96 
 
 		 224 aa  144  1e-33  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_3060  two component transcriptional regulator, LuxR family  39.91 
 
 		 215 aa  144  1e-33  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  38.86 
 
 		 214 aa  144  2e-33  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  38.29 
 
 		 228 aa  143  2e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  38.14 
 
 		 221 aa  142  3e-33  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  40.47 
 
 		 226 aa  142  3e-33  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  36.24 
 
 		 214 aa  142  3e-33  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  36.32 
 
 		 232 aa  142  4e-33  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  33.49 
 
 		 224 aa  142  4e-33  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  33.49 
 
 		 224 aa  142  5e-33  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  33.49 
 
 		 224 aa  142  5e-33  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  35.21 
 
 		 213 aa  141  8e-33  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal  1 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  36.06 
 
 		 214 aa  140  9.999999999999999e-33  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_007347  Reut_A1216  two component LuxR family transcriptional regulator  37.21 
 
 		 215 aa  140  9.999999999999999e-33  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_2375  two component LuxR family transcriptional regulator  35.51 
 
 		 214 aa  140  1.9999999999999998e-32  Pseudomonas mendocina ymp  Bacteria  normal  0.405291  normal  0.0506876 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  34.4 
 
 		 216 aa  140  1.9999999999999998e-32  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  35.24 
 
 		 214 aa  139  3e-32  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013501  Rmar_1123  two component transcriptional regulator, LuxR family  33.18 
 
 		 242 aa  139  3e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  36.92 
 
 		 224 aa  139  3e-32  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  38.16 
 
 		 214 aa  139  3e-32  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_007974  Rmet_4715  Two component LuxR family transcriptional regulator  34.91 
 
 		 264 aa  139  3e-32  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  36.97 
 
 		 208 aa  139  3e-32  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  0.0637899 
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  34.58 
 
 		 219 aa  139  3e-32  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.0121621 
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  37.62 
 
 		 216 aa  139  3.9999999999999997e-32  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  35.55 
 
 		 212 aa  139  3.9999999999999997e-32  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003295  RSc2312  two-component response regulator transcription regulator protein  35.07 
 
 		 238 aa  139  4.999999999999999e-32  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.500036 
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  35.19 
 
 		 215 aa  139  4.999999999999999e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal  1 
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  38.1 
 
 		 216 aa  139  4.999999999999999e-32  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_013530  Xcel_0606  two component transcriptional regulator, LuxR family  38.68 
 
 		 212 aa  139  4.999999999999999e-32  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_008025  Dgeo_0183  two component LuxR family transcriptional regulator  39.15 
 
 		 200 aa  139  4.999999999999999e-32  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.541303  normal  0.654013 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  35.19 
 
 		 215 aa  139  4.999999999999999e-32  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.329832 
 
 
-
 
NC_013235  Namu_0523  two component transcriptional regulator, LuxR family  36.79 
 
 		 230 aa  138  6e-32  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  32.43 
 
 		 224 aa  138  7e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  35.58 
 
 		 213 aa  138  7e-32  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_013411  GYMC61_2911  two component transcriptional regulator, LuxR family  33.97 
 
 		 209 aa  138  7e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010002  Daci_5322  two component LuxR family transcriptional regulator  37.22 
 
 		 220 aa  138  7e-32  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.929677 
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  35.58 
 
 		 213 aa  138  7e-32  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  35.19 
 
 		 215 aa  138  7.999999999999999e-32  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_008228  Patl_2290  two component LuxR family transcriptional regulator  33.8 
 
 		 215 aa  138  7.999999999999999e-32  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_010717  PXO_01515  transcriptional regulator LuxR/uhpA family  36.15 
 
 		 215 aa  138  7.999999999999999e-32  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.422594  n/a   
 
 
-
 
NC_010524  Lcho_0242  two component LuxR family transcriptional regulator  39.53 
 
 		 211 aa  138  8.999999999999999e-32  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.000159114 
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  35.24 
 
 		 214 aa  138  8.999999999999999e-32  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal  1 
 
 
-
 
NC_010086  Bmul_4256  two component LuxR family transcriptional regulator  35.19 
 
 		 215 aa  138  8.999999999999999e-32  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.282152  normal  1 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  33.8 
 
 		 217 aa  137  1e-31  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  35.19 
 
 		 215 aa  137  1e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  38.76 
 
 		 215 aa  137  1e-31  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_2613  response regulator GacA  33.95 
 
 		 214 aa  137  1e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  0.466832  n/a   
 
 
-
 
NC_008463  PA14_30650  response regulator GacA  33.95 
 
 		 214 aa  137  1e-31  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  hitchhiker  0.00700013 
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  35.19 
 
 		 215 aa  137  1e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal  1 
 
 
-
 
NC_007404  Tbd_1290  two component LuxR family transcriptional regulator  36.32 
 
 		 209 aa  137  2e-31  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.542915  normal  1 
 
 
-
 
NC_010513  Xfasm12_2177  response regulator receiver protein  37.14 
 
 		 220 aa  137  2e-31  Xylella fastidiosa M12  Bacteria  normal  0.430622  n/a   
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  37.2 
 
 		 215 aa  136  2e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal  1 
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  36.89 
 
 		 216 aa  137  2e-31  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008061  Bcen_4002  two component LuxR family transcriptional regulator  35.19 
 
 		 215 aa  137  2e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_010577  XfasM23_2089  two component LuxR family transcriptional regulator  37.14 
 
 		 220 aa  137  2e-31  Xylella fastidiosa M23  Bacteria  normal  0.954326  n/a   
 
 
-
 
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