17 homologs were found in PanDaTox collection
for query gene RPD_0725 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007958  RPD_0725  hypothetical protein  100 
 
 
111 aa  229  1e-59  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.617739 
 
 
-
 
NC_010172  Mext_0749  hypothetical protein  43.52 
 
 
111 aa  113  8.999999999999998e-25  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1727  hypothetical protein  48.04 
 
 
111 aa  107  4.0000000000000004e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0576246 
 
 
-
 
NC_010505  Mrad2831_4057  hypothetical protein  45.37 
 
 
111 aa  105  2e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0486506  normal 
 
 
-
 
NC_009719  Plav_0035  hypothetical protein  42.73 
 
 
116 aa  94.4  5e-19  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3258  hypothetical protein  40.37 
 
 
115 aa  92.8  2e-18  Caulobacter sp. K31  Bacteria  normal  0.317122  normal  0.791915 
 
 
-
 
NC_008009  Acid345_0270  hypothetical protein  37.04 
 
 
111 aa  84  7e-16  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.190773  normal 
 
 
-
 
NC_013204  Elen_2663  hypothetical protein  37.5 
 
 
114 aa  62.4  0.000000002  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.525352 
 
 
-
 
NC_012791  Vapar_2886  transcriptional regulator, ArsR family  32.71 
 
 
120 aa  57.8  0.00000005  Variovorax paradoxus S110  Bacteria  normal  0.23508  n/a   
 
 
-
 
NC_011891  A2cp1_2168  LuxR family transcriptional regulator  35.92 
 
 
122 aa  54.3  0.0000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1792  hypothetical protein  30 
 
 
115 aa  54.3  0.0000006  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_1872  LuxR family transcriptional regulator  27.27 
 
 
120 aa  52  0.000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.633218 
 
 
-
 
NC_009483  Gura_3531  regulatory protein, ArsR  30.19 
 
 
339 aa  50.1  0.00001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1088  hypothetical protein  29.76 
 
 
116 aa  48.1  0.00004  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000469359  n/a   
 
 
-
 
NC_008392  Bamb_5911  LuxR family transcriptional regulator  36.14 
 
 
115 aa  47.8  0.00005  Burkholderia ambifaria AMMD  Bacteria  normal  0.116094  decreased coverage  0.00152039 
 
 
-
 
NC_009253  Dred_1838  LuxR family transcriptional regulator  32.88 
 
 
122 aa  44.3  0.0006  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2057  LuxR family transcriptional regulator  34.52 
 
 
137 aa  42.7  0.002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.773871 
 
 
-
 
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