89 homologs were found in PanDaTox collection
for query gene RPD_0366 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007958  RPD_0366  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  100 
 
 		 244 aa  479  1e-134  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  hitchhiker  0.0042233 
 
 
-
 
NC_007778  RPB_0462  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  77.69 
 
 		 244 aa  377  1e-104  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.45404 
 
 
-
 
NC_011004  Rpal_0362  pyridoxamine 5'-phosphate oxidase-related FMN-binding  70.66 
 
 		 244 aa  353  1e-96  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.34488  n/a   
 
 
-
 
NC_009485  BBta_7366  hypothetical protein  66.94 
 
 		 242 aa  317  1e-85  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.708194  normal  1 
 
 
-
 
NC_007964  Nham_0444  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  63.93 
 
 		 247 aa  308  6.999999999999999e-83  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_007406  Nwi_0349  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  64.34 
 
 		 245 aa  304  8.000000000000001e-82  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.334445  normal  0.250597 
 
 
-
 
NC_007925  RPC_0598  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  64.2 
 
 		 247 aa  301  6.000000000000001e-81  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_5432  pyridoxamine 5'-phosphate oxidase-related FMN-binding  48.52 
 
 		 260 aa  204  1e-51  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.932188  n/a   
 
 
-
 
NC_010511  M446_0224  pyridoxamine 5'-phosphate oxidase-related FMN-binding  49.57 
 
 		 260 aa  192  6e-48  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.011733 
 
 
-
 
NC_009720  Xaut_2844  pyridoxamine 5'-phosphate oxidase-related FMN-binding  46.7 
 
 		 238 aa  190  2e-47  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.907911 
 
 
-
 
NC_011666  Msil_1374  pyridoxamine 5'-phosphate oxidase-related FMN-binding  48.74 
 
 		 256 aa  186  3e-46  Methylocella silvestris BL2  Bacteria  n/a    normal  0.694327 
 
 
-
 
NC_010505  Mrad2831_3090  pyridoxamine 5'-phosphate oxidase-related FMN-binding  45.38 
 
 		 261 aa  172  5.999999999999999e-42  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.853398  normal  1 
 
 
-
 
NC_011757  Mchl_1401  pyridoxamine 5'-phosphate oxidase-related FMN-binding  45.41 
 
 		 271 aa  171  1e-41  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.509564  normal  0.321093 
 
 
-
 
NC_010172  Mext_1239  pyridoxamine 5'-phosphate oxidase-related FMN-binding  44.98 
 
 		 271 aa  170  2e-41  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_1180  pyridoxamine 5'-phosphate oxidase-related FMN-binding  45.85 
 
 		 270 aa  169  3e-41  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.171584 
 
 
-
 
NC_010581  Bind_2742  pyridoxamine 5'-phosphate oxidase-related FMN-binding  44.54 
 
 		 260 aa  169  5e-41  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  0.615645 
 
 
-
 
NC_008254  Meso_2207  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  41.67 
 
 		 251 aa  160  1e-38  Chelativorans sp. BNC1  Bacteria  normal  0.359427  n/a   
 
 
-
 
NC_009636  Smed_2308  pyridoxamine 5'-phosphate oxidase-related FMN-binding  40.87 
 
 		 247 aa  148  8e-35  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.547637 
 
 
-
 
NC_009719  Plav_3592  pyridoxamine 5'-phosphate oxidase-related FMN-binding  40.17 
 
 		 255 aa  145  5e-34  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009667  Oant_1581  pyridoxamine 5'-phosphate oxidase-related FMN-binding  38.97 
 
 		 245 aa  136  3.0000000000000003e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0647071  n/a   
 
 
-
 
NC_011369  Rleg2_2826  pyridoxamine 5'-phosphate oxidase-related FMN-binding  36.07 
 
 		 249 aa  119  4.9999999999999996e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.171612  normal  0.204589 
 
 
-
 
NC_012850  Rleg_3095  pyridoxamine 5'-phosphate oxidase-related FMN-binding  33.33 
 
 		 249 aa  116  3e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011989  Avi_3284  hypothetical protein  33.62 
 
 		 243 aa  105  6e-22  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A3420  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  35.56 
 
 		 270 aa  105  1e-21  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.331043  n/a   
 
 
-
 
NC_008726  Mvan_5737  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  34.15 
 
 		 270 aa  100  2e-20  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  0.602445 
 
 
-
 
NC_009952  Dshi_2212  hypothetical protein  42.36 
 
 		 164 aa  97.8  1e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011138  MADE_01539  uncharacterized metal-binding protein  28.45 
 
 		 243 aa  97.4  2e-19  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.504021  n/a   
 
 
-
 
NC_010322  PputGB1_4491  pyridoxamine 5'-phosphate oxidase-related FMN-binding  30.25 
 
 		 276 aa  95.9  6e-19  Pseudomonas putida GB-1  Bacteria  normal  0.0201918  normal  1 
 
 
-
 
NC_011891  A2cp1_0907  pyridoxamine 5'-phosphate oxidase-related FMN-binding  44.27 
 
 		 169 aa  95.5  6e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  unclonable  0.000000000620808  n/a   
 
 
-
 
NC_009338  Mflv_1085  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  35.32 
 
 		 276 aa  95.1  1e-18  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.429706  normal  0.50341 
 
 
-
 
NC_010501  PputW619_0965  pyridoxamine 5'-phosphate oxidase-related FMN-binding  30.13 
 
 		 243 aa  94.4  1e-18  Pseudomonas putida W619  Bacteria  normal  0.499992  normal  0.821374 
 
 
-
 
NC_012560  Avin_13440  pyridoxamine 5-phosphate oxidase  32.9 
 
 		 245 aa  94.7  1e-18  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_014158  Tpau_0857  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  33.81 
 
 		 267 aa  94  2e-18  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.579175  n/a   
 
 
-
 
NC_009512  Pput_4366  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  31.47 
 
 		 243 aa  94.4  2e-18  Pseudomonas putida F1  Bacteria  normal  0.809108  normal  0.082398 
 
 
-
 
NC_002947  PP_1358  hypothetical protein  31.8 
 
 		 289 aa  94  2e-18  Pseudomonas putida KT2440  Bacteria  hitchhiker  0.0010611  normal  0.192229 
 
 
-
 
NC_008228  Patl_1491  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  27.27 
 
 		 244 aa  90.5  2e-17  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_002977  MCA0309  hypothetical protein  29.06 
 
 		 238 aa  90.1  3e-17  Methylococcus capsulatus str. Bath  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_3456  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  32.39 
 
 		 268 aa  89.7  4e-17  Conexibacter woesei DSM 14684  Bacteria  normal  0.0456393  normal  0.068579 
 
 
-
 
NC_008463  PA14_57040  hypothetical protein  32.03 
 
 		 244 aa  89  6e-17  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_4504  pyridoxamine 5'-phosphate oxidase-like, FMN-binding  31 
 
 		 243 aa  88.2  1e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  decreased coverage  0.000287779 
 
 
-
 
NC_011145  AnaeK_0903  pyridoxamine 5'-phosphate oxidase-related FMN-binding  41.98 
 
 		 167 aa  87  3e-16  Anaeromyxobacter sp. K  Bacteria  decreased coverage  0.00546716  n/a   
 
 
-
 
NC_009439  Pmen_3685  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  29.91 
 
 		 244 aa  86.7  3e-16  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008146  Mmcs_5122  pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein  32.29 
 
 		 266 aa  84  0.000000000000002  Mycobacterium sp. MCS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008705  Mkms_5211  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  32.29 
 
 		 266 aa  84  0.000000000000002  Mycobacterium sp. KMS  Bacteria  normal  0.733021  normal  1 
 
 
-
 
NC_009656  PSPA7_4959  hypothetical protein  31.6 
 
 		 244 aa  83.6  0.000000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.112474  n/a   
 
 
-
 
NC_009077  Mjls_5502  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  32.29 
 
 		 266 aa  82.8  0.000000000000004  Mycobacterium sp. JLS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007951  Bxe_A4323  hypothetical protein  37.96 
 
 		 217 aa  80.5  0.00000000000002  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010681  Bphyt_0397  pyridoxamine 5'-phosphate oxidase-related FMN-binding  32.35 
 
 		 220 aa  79.7  0.00000000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008044  TM1040_2264  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  37.74 
 
 		 171 aa  78.6  0.00000000000009  Ruegeria sp. TM1040  Bacteria  normal  0.159731  normal  1 
 
 
-
 
NC_010622  Bphy_0115  pyridoxamine 5'-phosphate oxidase-related FMN-binding  29.9 
 
 		 221 aa  78.6  0.00000000000009  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010508  Bcenmc03_0262  pyridoxamine 5'-phosphate oxidase-related FMN-binding  34.2 
 
 		 219 aa  77.8  0.0000000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.854509 
 
 
-
 
NC_007760  Adeh_0858  FMN-binding pyridoxamine 5'-phosphate oxidase-related protein protein  41.41 
 
 		 171 aa  77.4  0.0000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  hitchhiker  0.00651728  n/a   
 
 
-
 
NC_009428  Rsph17025_0512  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  37.24 
 
 		 165 aa  76.3  0.0000000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.0680495 
 
 
-
 
NC_010551  BamMC406_0208  pyridoxamine 5'-phosphate oxidase-related FMN-binding  34.02 
 
 		 219 aa  75.9  0.0000000000005  Burkholderia ambifaria MC40-6  Bacteria  normal  1  normal  0.996634 
 
 
-
 
NC_008060  Bcen_2826  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  33.68 
 
 		 219 aa  75.5  0.0000000000006  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008542  Bcen2424_0280  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  33.68 
 
 		 219 aa  75.5  0.0000000000006  Burkholderia cenocepacia HI2424  Bacteria  normal  0.450879  n/a   
 
 
-
 
NC_009049  Rsph17029_2234  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  39.52 
 
 		 164 aa  74.3  0.000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.957515 
 
 
-
 
NC_007493  RSP_0581  hypothetical protein  39.52 
 
 		 164 aa  73.6  0.000000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007802  Jann_3613  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  37.7 
 
 		 184 aa  72.8  0.000000000005  Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_2721  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  37.42 
 
 		 171 aa  72.4  0.000000000007  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008390  Bamb_0194  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  33.17 
 
 		 248 aa  71.6  0.000000000009  Burkholderia ambifaria AMMD  Bacteria  normal  1  n/a   
 
 
-
 
NC_011677  PHATRDRAFT_4413  predicted protein  32.43 
 
 		 259 aa  72  0.000000000009  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.748295  n/a   
 
 
-
 
NC_008686  Pden_1323  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  37.06 
 
 		 161 aa  71.2  0.00000000001  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008686  Pden_1574  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  37.06 
 
 		 161 aa  71.2  0.00000000001  Paracoccus denitrificans PD1222  Bacteria  normal  0.588617  normal  0.0203021 
 
 
-
 
NC_007974  Rmet_5353  hypothetical protein  30.57 
 
 		 217 aa  70.9  0.00000000002  Cupriavidus metallidurans CH34  Bacteria  normal  0.513248  normal  1 
 
 
-
 
NC_010084  Bmul_0188  pyridoxamine 5'-phosphate oxidase-related FMN-binding  33.33 
 
 		 254 aa  69.3  0.00000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  hitchhiker  0.0000540256 
 
 
-
 
NC_010524  Lcho_1064  pyridoxamine 5'-phosphate oxidase-related FMN-binding  38.69 
 
 		 171 aa  69.3  0.00000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_007510  Bcep18194_A3383  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  33.58 
 
 		 219 aa  67.4  0.0000000002  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_3461  pyridoxamine 5'-phosphate oxidase-related FMN-binding  40.58 
 
 		 170 aa  67  0.0000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  hitchhiker  0.00895829 
 
 
-
 
NC_011831  Cagg_1695  pyridoxamine 5'-phosphate oxidase-related FMN-binding  34.23 
 
 		 167 aa  65.9  0.0000000007  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_006348  BMA2903  hypothetical protein  31.98 
 
 		 226 aa  64.7  0.000000001  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007434  BURPS1710b_0049  pyridoxamine 5'-phosphate oxidase family protein  32.49 
 
 		 288 aa  64.7  0.000000001  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_009074  BURPS668_3829  pyridoxamine 5'-phosphate oxidase family protein  31.98 
 
 		 226 aa  64.7  0.000000001  Burkholderia pseudomallei 668  Bacteria  normal  0.841691  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3405  pyridoxamine 5'-phosphate oxidase family protein  31.98 
 
 		 226 aa  64.7  0.000000001  Burkholderia mallei SAVP1  Bacteria  normal  0.0603808  n/a   
 
 
-
 
NC_008836  BMA10229_A1637  pyridoxamine 5'-phosphate oxidase family protein  32.49 
 
 		 291 aa  64.7  0.000000001  Burkholderia mallei NCTC 10229  Bacteria  normal  0.600964  n/a   
 
 
-
 
NC_009080  BMA10247_2964  pyridoxamine 5'-phosphate oxidase family protein  31.98 
 
 		 226 aa  64.7  0.000000001  Burkholderia mallei NCTC 10247  Bacteria  normal  0.920476  n/a   
 
 
-
 
NC_009076  BURPS1106A_3910  pyridoxamine 5'-phosphate oxidase family protein  31.98 
 
 		 226 aa  64.7  0.000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_007651  BTH_I3156  pyridoxamine 5'-phosphate oxidase family protein  34.53 
 
 		 240 aa  64.3  0.000000002  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_2042  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  37.31 
 
 		 199 aa  62.8  0.000000005  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0340627  normal  1 
 
 
-
 
NC_009675  Anae109_0916  pyridoxamine 5'-phosphate oxidase-related FMN-binding  35.71 
 
 		 172 aa  59.7  0.00000004  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.00374077  normal  1 
 
 
-
 
NC_007908  Rfer_1441  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  34.06 
 
 		 162 aa  58.5  0.00000008  Rhodoferax ferrireducens T118  Bacteria  decreased coverage  0.00418233  n/a   
 
 
-
 
NC_007404  Tbd_0688  hypothetical protein  31.13 
 
 		 194 aa  53.9  0.000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  0.365581 
 
 
-
 
NC_009371  OSTLU_41998  predicted protein  27.66 
 
 		 314 aa  53.1  0.000004  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  1  normal  1 
 
 
-
 
NC_009365  OSTLU_13022  predicted protein  26.52 
 
 		 276 aa  52.8  0.000004  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.197262  normal  0.0448827 
 
 
-
 
NC_009943  Dole_2144  pyridoxamine 5'-phosphate oxidase-related FMN-binding  31.06 
 
 		 147 aa  50.4  0.00003  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_011687  PHATRDRAFT_54952  predicted protein  25.79 
 
 		 415 aa  49.3  0.00006  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.417126  n/a   
 
 
-
 
NC_010002  Daci_4546  pyridoxamine 5'-phosphate oxidase-related FMN-binding  31.85 
 
 		 194 aa  44.7  0.001  Delftia acidovorans SPH-1  Bacteria  normal  0.158817  normal  0.600286 
 
 
-
 
NC_013457  VEA_001358  pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein  27.7 
 
 		 176 aa  43.1  0.004  Vibrio sp. Ex25  Bacteria  normal  0.343115  n/a   
 
 
-
 
NC_008599  CFF8240_1758  pyridoxamine 5'-phosphate oxidase family protein  33.87 
 
 		 248 aa  42.4  0.007  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  1  n/a   
 
 
-
 
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